GBrowse Details

Vigan.10G151200.01

Basic Information:
Name: Vigan.10G151200.01
Multiple alignment
Variant Information
Position: Chr10:20992200..20994494 (+ strand)
Length: 2295
Functional Information:
Description: Similar to 60S ribosomal protein L8-3-like. [XP_004492717.1, Cicer arietinum]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Cellular Component: large ribosomal subunit (GO:0015934)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L2 (IPR002171)
Translation protein SH3-like domain (IPR008991)
Nucleic acid-binding, OB-fold (IPR012340)
Ribosomal protein L2 domain 2 (IPR014722)
Ribosomal protein L2, domain 3 (IPR014726)
Ribosomal Proteins L2, RNA binding domain (IPR022666)
Ribosomal protein L2, C-terminal (IPR022669)
Ribosomal protein L2, conserved site (IPR022671)
Ribosomal protein L2, archaeal-type (IPR023672)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:78.21,156.70,42.27,25.93,78.92,222.96,42.08,39.90
Arabidopsis thaliana homolog: AT4G36130.1
Automatic updates:
Name: BT092719 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-11H23 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:20992200..20992554 (+ strand)
Length: 355
Type: five_prime_UTR
Position: Chr10:20992555..20992994 (+ strand)
Length: 440
Type: CDS
Position: Chr10:20993645..20993990 (+ strand)
Length: 346
Type: CDS
Position: Chr10:20993991..20994494 (+ strand)
Length: 504
Type: three_prime_UTR

>Vigan.10G151200.01 class=Sequence position=Chr10:20992200..20994494 (+ strand)
TACGGCAACG GTGGTGTCTC ACAGTCTTAG AAGTGTGAGA AGAAAATATG AAGGTGCAGA TAATAATAGC CAATAACTGA
TTGGGGCGCA GAAAGCTAAC AATACCATTC CTTTAAAGCC CATTTAGGCA GTTATTGGGC TCTGGTGATT CGGCCCCGAT
CTTAAAAGTT TCTAGGCTGC TTCTTCATGC ACCTCCTTTT GTTTTCCTGC ACTCCCTGAA ATCTATAAAC CTAAGTTACT
AAATTGCAAT CTACGTAGGC GCGTCAGCTA TATATTACTC GCATAGCCAA AACCCTAGCT TCCCCATCCA TCCTTCTTCC
ATCTGCGCGG CGGATACACA CACAGGTGAA TCGGAATGGG AAGGGTAATT CGCGCCCAGC GTAAGGGTGC GGGGTCTGTT
TTCAAGTCCC ACACCCACCA CCGCAAGGGT CCGGCGAGGT TTCGCAGCCT CGATTTCGGC GAACGCAACG GCTACCTGAA
GGGAGTGGTC ACCGACATTA TCCACGATCC CGGTCGTGGC GCTCCACTTG CCAAGGTTAC ATTCCGCCAT CCCTTCCGCT
ACAAGAAGCA GACGGAACTC TTCGTCGCCG CGGAAGGTCT CTACACTGGG CAGTTCCTCT ACTGCGGCAA GAAGGCCACC
CTCGTTGTTG GCAACGTCTT GCCCCTCCGA TCTATCCCCG AGGGTGCCGT CATCTGCAAC GTTGAACACC ATGTCGGCGA
CCGTGGCGTC TTCGCCAGGG CCTCCGGCGA CTACGCCATT GTTATCAGCC ACAACCCGGA TAACGACACA TCTAGGTTAC
CATTCGTGCC TTTTTATTTT ACTCCGGATT ACTGTTTTTG GATTGGTTTG ATTGTTTGTG ATTCATAATT CGTGTTTGAG
GCTTGCGTCT ATTGGTTTGC GTGGTGTTTT ATTTTCTTTT ACTGTTAACT AAAGTGAATT ATATTTGTTA ATATTGTAGG
AAATTAGGGA ACTGAAAGCT CGGCATTTAG TTAGGGATTC TGGATGAATA AGTTGAGAGT AAAGTGAGAT ATAATTAGGG
GCCCTGTTTG GATGACTTCC ATCGATTGAC TGTATTTGTA ACAGAAAATA GTATTTGTAT TATCAAATAC GAAAAAAATG
AAGTAAACTT GTCCATGAGT TATGGTTAGG TTATGGATAA TTAGATTTTA GTGATGTTAA TTAATTGAAT TTGCACAAAT
TAGGTAATAG ATCAAATGGT TTCTTTTTTA GTTATTTTTT GTTCTATATT ACGAAGATGG TTAACGGCCT ATCAGGTTCT
TGTTGTAAAG CATGTTATAT TCGCAATGCC AAATTAGGAG TTGATAATTC GGCAGATATA CTATGTTCTA TATTTTTATC
TTTTTAGAGT AGTTTGTAAG GTGGAAGTTT ACTCTCTGGA CAAAATGTGC AAGCGTTTGA ATGCATCTTT GCACTCTTTT
GGCAGGATCA AGCTTCCTTC TGGAGCGAAG AAGATTGTGC CGAGTGCATG TAGGGCAATG ATTGGGCAAG TTGCGGGTGG
AGGGAGAACT GAGAAGCCTC TTCTTAAGGC TGGTAATGCT TACCACAAGT TTAGAGTGAA GAGGAACTGC TGGCCTAAGG
TGCGTGGTGT GGCTATGAAC CCAGTTGAGC ATCCTCACGG AGGAGGTAAC CACCAGCACA TTGGGCATGC TAGTACTGTC
AGACGTGATG CTCCTCCTGG CCAGAAGGTT GGTCTCATTG CCGCCAGGAG AACTGGTCGT CTTAGGGGGC AAGCTGCCGC
CACTGCTTCT AAAGCTGACA AGACTACTTA AGGAGATTGT TAAAGATATG CTTAATTACA AATTTTCAAA TTTTGTTTCT
TTGATAGTTT TTGTTCAACT TTTGGCTACT ATTTTGAGTA CCATTTTCAC CATTAATATG AAAGCTTGTA TTGTGCGGTG
TTTTATATTT TCAGTACCAT CCAATCCTAC TGTTTGTCAA TCATTTGGTG ATTTCAACTA GTTGTAACTT TTAACGTTCC
TGTATGGTTA CCCTCTGTTT TTGAACCACT ACCGATCCCT ATTTTTTTTA TAGGTCAATT TGGTTTTGCT TGCCAGTATT
TTAGTGCAGT TCTGCCATCC GTAGTTTTTC TACTCTAGGT GTTTTGCTCA ACTGTTATTC AGATGAGCTG TGTTGTTAGT
TCGACTTTGA AAGGGAATGT TGCTTGAGAG TTAGGGGACC TTGTTTTTGT ACAATAAGCC GACGGTGTTA GGAAAAAACC
AGTGAGAAGC TTGTGAGTAG CTTGTGAAGT GATAAAATAT ATAACGCTTG TCTCA

>Vigan.10G151200.01
TACGGCAACG GTGGTGTCTC ACAGTCTTAG AAGTGTGAGA AGAAAATATG AAGGTGCAGA TAATAATAGC CAATAACTGA
TTGGGGCGCA GAAAGCTAAC AATACCATTC CTTTAAAGCC CATTTAGGCA GTTATTGGGC TCTGGTGATT CGGCCCCGAT
CTTAAAAGTT TCTAGGCTGC TTCTTCATGC ACCTCCTTTT GTTTTCCTGC ACTCCCTGAA ATCTATAAAC CTAAGTTACT
AAATTGCAAT CTACGTAGGC GCGTCAGCTA TATATTACTC GCATAGCCAA AACCCTAGCT TCCCCATCCA TCCTTCTTCC
ATCTGCGCGG CGGATACACA CACAGGTGAA TCGGAATGGG AAGGGTAATT CGCGCCCAGC GTAAGGGTGC GGGGTCTGTT
TTCAAGTCCC ACACCCACCA CCGCAAGGGT CCGGCGAGGT TTCGCAGCCT CGATTTCGGC GAACGCAACG GCTACCTGAA
GGGAGTGGTC ACCGACATTA TCCACGATCC CGGTCGTGGC GCTCCACTTG CCAAGGTTAC ATTCCGCCAT CCCTTCCGCT
ACAAGAAGCA GACGGAACTC TTCGTCGCCG CGGAAGGTCT CTACACTGGG CAGTTCCTCT ACTGCGGCAA GAAGGCCACC
CTCGTTGTTG GCAACGTCTT GCCCCTCCGA TCTATCCCCG AGGGTGCCGT CATCTGCAAC GTTGAACACC ATGTCGGCGA
CCGTGGCGTC TTCGCCAGGG CCTCCGGCGA CTACGCCATT GTTATCAGCC ACAACCCGGA TAACGACACA TCTAGGATCA
AGCTTCCTTC TGGAGCGAAG AAGATTGTGC CGAGTGCATG TAGGGCAATG ATTGGGCAAG TTGCGGGTGG AGGGAGAACT
GAGAAGCCTC TTCTTAAGGC TGGTAATGCT TACCACAAGT TTAGAGTGAA GAGGAACTGC TGGCCTAAGG TGCGTGGTGT
GGCTATGAAC CCAGTTGAGC ATCCTCACGG AGGAGGTAAC CACCAGCACA TTGGGCATGC TAGTACTGTC AGACGTGATG
CTCCTCCTGG CCAGAAGGTT GGTCTCATTG CCGCCAGGAG AACTGGTCGT CTTAGGGGGC AAGCTGCCGC CACTGCTTCT
AAAGCTGACA AGACTACTTA AGGAGATTGT TAAAGATATG CTTAATTACA AATTTTCAAA TTTTGTTTCT TTGATAGTTT
TTGTTCAACT TTTGGCTACT ATTTTGAGTA CCATTTTCAC CATTAATATG AAAGCTTGTA TTGTGCGGTG TTTTATATTT
TCAGTACCAT CCAATCCTAC TGTTTGTCAA TCATTTGGTG ATTTCAACTA GTTGTAACTT TTAACGTTCC TGTATGGTTA
CCCTCTGTTT TTGAACCACT ACCGATCCCT ATTTTTTTTA TAGGTCAATT TGGTTTTGCT TGCCAGTATT TTAGTGCAGT
TCTGCCATCC GTAGTTTTTC TACTCTAGGT GTTTTGCTCA ACTGTTATTC AGATGAGCTG TGTTGTTAGT TCGACTTTGA
AAGGGAATGT TGCTTGAGAG TTAGGGGACC TTGTTTTTGT ACAATAAGCC GACGGTGTTA GGAAAAAACC AGTGAGAAGC
TTGTGAGTAG CTTGTGAAGT GATAAAATAT ATAACGCTTG TCTCA

>Vigan.10G151200.01
ATGGGAAGGG TAATTCGCGC CCAGCGTAAG GGTGCGGGGT CTGTTTTCAA GTCCCACACC CACCACCGCA AGGGTCCGGC
GAGGTTTCGC AGCCTCGATT TCGGCGAACG CAACGGCTAC CTGAAGGGAG TGGTCACCGA CATTATCCAC GATCCCGGTC
GTGGCGCTCC ACTTGCCAAG GTTACATTCC GCCATCCCTT CCGCTACAAG AAGCAGACGG AACTCTTCGT CGCCGCGGAA
GGTCTCTACA CTGGGCAGTT CCTCTACTGC GGCAAGAAGG CCACCCTCGT TGTTGGCAAC GTCTTGCCCC TCCGATCTAT
CCCCGAGGGT GCCGTCATCT GCAACGTTGA ACACCATGTC GGCGACCGTG GCGTCTTCGC CAGGGCCTCC GGCGACTACG
CCATTGTTAT CAGCCACAAC CCGGATAACG ACACATCTAG GATCAAGCTT CCTTCTGGAG CGAAGAAGAT TGTGCCGAGT
GCATGTAGGG CAATGATTGG GCAAGTTGCG GGTGGAGGGA GAACTGAGAA GCCTCTTCTT AAGGCTGGTA ATGCTTACCA
CAAGTTTAGA GTGAAGAGGA ACTGCTGGCC TAAGGTGCGT GGTGTGGCTA TGAACCCAGT TGAGCATCCT CACGGAGGAG
GTAACCACCA GCACATTGGG CATGCTAGTA CTGTCAGACG TGATGCTCCT CCTGGCCAGA AGGTTGGTCT CATTGCCGCC
AGGAGAACTG GTCGTCTTAG GGGGCAAGCT GCCGCCACTG CTTCTAAAGC TGACAAGACT ACTTAA

>Vigan.10G151200.01
MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVVTDIIH DPGRGAPLAK VTFRHPFRYK KQTELFVAAE
GLYTGQFLYC GKKATLVVGN VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVISHN PDNDTSRIKL PSGAKKIVPS
ACRAMIGQVA GGGRTEKPLL KAGNAYHKFR VKRNCWPKVR GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA
RRTGRLRGQA AATASKADKT T*