GBrowse Details

Vigan.10G082400.01

Basic Information:
Name: Vigan.10G082400.01
Multiple alignment
Variant Information
Position: Chr10:9363612..9365545 (- strand)
Length: 1934
Functional Information:
Description: Similar to Uncharacterized protein. [I1J4X0, Glycine max]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.14,1.23,26.39,1.55,85.94,24.54,21.53,16.04
Automatic updates:
Name: KT031097 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_167 bHLH transcription factor (Glyma01g02390.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:9363612..9363942 (- strand)
Length: 331
Type: three_prime_UTR
Position: Chr10:9363943..9364029 (- strand)
Length: 87
Type: CDS
Position: Chr10:9364137..9364304 (- strand)
Length: 168
Type: CDS
Position: Chr10:9364401..9364571 (- strand)
Length: 171
Type: CDS
Position: Chr10:9364789..9365358 (- strand)
Length: 570
Type: CDS
Position: Chr10:9365359..9365545 (- strand)
Length: 187
Type: five_prime_UTR

>Vigan.10G082400.01 class=Sequence position=Chr10:9363612..9365545 (- strand)
ATTTTAGCCT ATTACATGTT TACTTGTTAC ACTATTATTT AAACAAACTT CTCCCACTTG CTTCAACTTC ATCTTATCAA
CCCTTCCCTG TTTGCTTTTT TCACAATTCA CTTCCTTTTA TTCTAGAGAG AAGGGGAGAG GAATAGAGAG AGAGTGAGAG
AGAGAGAGGG AGAAAAATAG CACAAAGATG GAGCTTTCTC AACTTGGTTT TCTGGATGAG CTGCTTGCTC CAAGAAAAGA
CACTTGGAGT GCTTTGTCTA CTGGGTTGAA TGAGTTACTT CCTAGTGCTT GGAGCTTTGA CTCTTTTGAT GAGAACCAGG
GTTTAGCAAC TTTGAATCCT TCATTTGCTG CATTTTCAAC CCCACTAGAC CACAGGTTTG AATGTCCTTA TGGAAGTGAA
GCAACCCACC CTTTTGTTGA TGAGTTCTCA TTGCCAGAGC TTGAATCATT ATACACCAGA AATGATGAGT CAGCACCAGT
TCTCCCACAA GAAGATAACC CATCATTGGA GGATGAAGAG TTTGGCTTTC TGGGAAGTGA TAACCAGAGT TTGGAGCAAG
CAAAAAATGG CTGCAAAATT GAGGAACAAT TGACAGAGAT TCCAGTCTTC AACATGGGTT TGTGTGCAGA GAAAAAGCTC
AAATCCAAAA AGCTGGAAGG GCAGCCCTCA AAGAATCTCA TGGCAGAAAG AAGGAGAAGA AAGCGTTTGA ATGACCGTCT
TTCCATGCTA AGGTCAATAG TCCCGAAGAT TAGCAAGGTG ATTCAACAGA TACAATATAA TTCTTTTTCA TCTCTTTTTT
CCAACCTCGT TTTACCTTGT CATTGCCTTT TTATAAATGT CTCAATCAAT GGAAATGAAA TTGGCTTTCT TAAGTAGGTG
GTCTTTTCAT GATTGTTTTC TACCAACACT TGCATTTACT GTTTGATTTT CTCTTTACCC TTTTGAACTA ACATGAGAAT
ACAAACAATG ACAGATGGAC AGGACCTCCA TTCTCGGAGA CACCATTGAT TACATGAAAG AGCTTCTAGA AAGGATAGGT
AAGTTGCAAG AAGAAGAAAT GGAGGAGGGA ACAAATCATA TAAACCTCTT GGGCAATTCT AAGGAGCTAA AGCCAAATGA
AGCAATGGTA AGAAATTCCC CCAAGGTATG GGCTAGTTCT TGTCACTGAG TAACCTCTAA ACTGATCCAC AATAACACAG
CAAGTTCCTG AACCAATGTA TGTGTTGTAA TGCTTTTGCA GTTTGATGTT GAGAGAAGAC AGCATGACAC AAGGATTAGC
ATCTGCTGTG CTACAAAGCT GGGATTACTC CTGTCCACAG TGAATACCCT AGAAGCATTA GGCCTTGAGA TTCATCAGTG
TGTTATAAGC AACTTCAATG ATTTTTCAAT GCAAGCAACC TGCTCTGAGG TTTGTACGAA GTTGCATTCT GTAACTTATT
TCAGTGGTCT CTATTGATTT ACATGATGAC TGAAATCAAA TGTTACTTTT TTACCTTATT GTCCTAATGG TCTTAGGCAG
CTGAGCAGAG AAATTGTACG AGCCCGGAAG ATATAAAGCA AGCATTATTC AGAAATGCAG GTTATGGTGG AAGATGTCTG
TAAGAGAAAG ATGGAAAGCT GAAATAACAA TTTGCTGATG TTGAAAGAGA AGCAAAGTTC TCCCTTTTGT AATTCTAGAT
TAGGGTATTA GAAAGTTTAA TGAGATTTCC CAATAAGTTG GCTTTGATTG ATGGTTTGAT TCTTACAAGT TTCAACTTTA
CCCTGTATTT TAACATACTA TAGGGGTATG TTCAGTTGAA GCCTCACTTT CAACTTGTGA TGAATATCCA ATTTTATAGT
AATGAAAAAG GCTTGTTGCC AAACAATAAG TGGAATCAAC CTGATTTTAA TAGAATCCTG AATATGCGGT TGCTTCAAAA
ATTTCTTTTC TGGG

>Vigan.10G082400.01
ATTTTAGCCT ATTACATGTT TACTTGTTAC ACTATTATTT AAACAAACTT CTCCCACTTG CTTCAACTTC ATCTTATCAA
CCCTTCCCTG TTTGCTTTTT TCACAATTCA CTTCCTTTTA TTCTAGAGAG AAGGGGAGAG GAATAGAGAG AGAGTGAGAG
AGAGAGAGGG AGAAAAATAG CACAAAGATG GAGCTTTCTC AACTTGGTTT TCTGGATGAG CTGCTTGCTC CAAGAAAAGA
CACTTGGAGT GCTTTGTCTA CTGGGTTGAA TGAGTTACTT CCTAGTGCTT GGAGCTTTGA CTCTTTTGAT GAGAACCAGG
GTTTAGCAAC TTTGAATCCT TCATTTGCTG CATTTTCAAC CCCACTAGAC CACAGGTTTG AATGTCCTTA TGGAAGTGAA
GCAACCCACC CTTTTGTTGA TGAGTTCTCA TTGCCAGAGC TTGAATCATT ATACACCAGA AATGATGAGT CAGCACCAGT
TCTCCCACAA GAAGATAACC CATCATTGGA GGATGAAGAG TTTGGCTTTC TGGGAAGTGA TAACCAGAGT TTGGAGCAAG
CAAAAAATGG CTGCAAAATT GAGGAACAAT TGACAGAGAT TCCAGTCTTC AACATGGGTT TGTGTGCAGA GAAAAAGCTC
AAATCCAAAA AGCTGGAAGG GCAGCCCTCA AAGAATCTCA TGGCAGAAAG AAGGAGAAGA AAGCGTTTGA ATGACCGTCT
TTCCATGCTA AGGTCAATAG TCCCGAAGAT TAGCAAGATG GACAGGACCT CCATTCTCGG AGACACCATT GATTACATGA
AAGAGCTTCT AGAAAGGATA GGTAAGTTGC AAGAAGAAGA AATGGAGGAG GGAACAAATC ATATAAACCT CTTGGGCAAT
TCTAAGGAGC TAAAGCCAAA TGAAGCAATG GTAAGAAATT CCCCCAAGTT TGATGTTGAG AGAAGACAGC ATGACACAAG
GATTAGCATC TGCTGTGCTA CAAAGCTGGG ATTACTCCTG TCCACAGTGA ATACCCTAGA AGCATTAGGC CTTGAGATTC
ATCAGTGTGT TATAAGCAAC TTCAATGATT TTTCAATGCA AGCAACCTGC TCTGAGGCAG CTGAGCAGAG AAATTGTACG
AGCCCGGAAG ATATAAAGCA AGCATTATTC AGAAATGCAG GTTATGGTGG AAGATGTCTG TAAGAGAAAG ATGGAAAGCT
GAAATAACAA TTTGCTGATG TTGAAAGAGA AGCAAAGTTC TCCCTTTTGT AATTCTAGAT TAGGGTATTA GAAAGTTTAA
TGAGATTTCC CAATAAGTTG GCTTTGATTG ATGGTTTGAT TCTTACAAGT TTCAACTTTA CCCTGTATTT TAACATACTA
TAGGGGTATG TTCAGTTGAA GCCTCACTTT CAACTTGTGA TGAATATCCA ATTTTATAGT AATGAAAAAG GCTTGTTGCC
AAACAATAAG TGGAATCAAC CTGATTTTAA TAGAATCCTG AATATGCGGT TGCTTCAAAA ATTTCTTTTC TGGG

>Vigan.10G082400.01
ATGGAGCTTT CTCAACTTGG TTTTCTGGAT GAGCTGCTTG CTCCAAGAAA AGACACTTGG AGTGCTTTGT CTACTGGGTT
GAATGAGTTA CTTCCTAGTG CTTGGAGCTT TGACTCTTTT GATGAGAACC AGGGTTTAGC AACTTTGAAT CCTTCATTTG
CTGCATTTTC AACCCCACTA GACCACAGGT TTGAATGTCC TTATGGAAGT GAAGCAACCC ACCCTTTTGT TGATGAGTTC
TCATTGCCAG AGCTTGAATC ATTATACACC AGAAATGATG AGTCAGCACC AGTTCTCCCA CAAGAAGATA ACCCATCATT
GGAGGATGAA GAGTTTGGCT TTCTGGGAAG TGATAACCAG AGTTTGGAGC AAGCAAAAAA TGGCTGCAAA ATTGAGGAAC
AATTGACAGA GATTCCAGTC TTCAACATGG GTTTGTGTGC AGAGAAAAAG CTCAAATCCA AAAAGCTGGA AGGGCAGCCC
TCAAAGAATC TCATGGCAGA AAGAAGGAGA AGAAAGCGTT TGAATGACCG TCTTTCCATG CTAAGGTCAA TAGTCCCGAA
GATTAGCAAG ATGGACAGGA CCTCCATTCT CGGAGACACC ATTGATTACA TGAAAGAGCT TCTAGAAAGG ATAGGTAAGT
TGCAAGAAGA AGAAATGGAG GAGGGAACAA ATCATATAAA CCTCTTGGGC AATTCTAAGG AGCTAAAGCC AAATGAAGCA
ATGGTAAGAA ATTCCCCCAA GTTTGATGTT GAGAGAAGAC AGCATGACAC AAGGATTAGC ATCTGCTGTG CTACAAAGCT
GGGATTACTC CTGTCCACAG TGAATACCCT AGAAGCATTA GGCCTTGAGA TTCATCAGTG TGTTATAAGC AACTTCAATG
ATTTTTCAAT GCAAGCAACC TGCTCTGAGG CAGCTGAGCA GAGAAATTGT ACGAGCCCGG AAGATATAAA GCAAGCATTA
TTCAGAAATG CAGGTTATGG TGGAAGATGT CTGTAA

>Vigan.10G082400.01
MELSQLGFLD ELLAPRKDTW SALSTGLNEL LPSAWSFDSF DENQGLATLN PSFAAFSTPL DHRFECPYGS EATHPFVDEF
SLPELESLYT RNDESAPVLP QEDNPSLEDE EFGFLGSDNQ SLEQAKNGCK IEEQLTEIPV FNMGLCAEKK LKSKKLEGQP
SKNLMAERRR RKRLNDRLSM LRSIVPKISK MDRTSILGDT IDYMKELLER IGKLQEEEME EGTNHINLLG NSKELKPNEA
MVRNSPKFDV ERRQHDTRIS ICCATKLGLL LSTVNTLEAL GLEIHQCVIS NFNDFSMQAT CSEAAEQRNC TSPEDIKQAL
FRNAGYGGRC L*