GBrowse Details

Vigan.09G186700.01

Basic Information:
Name: Vigan.09G186700.01
Multiple alignment
Variant Information
Position: Chr09:33217696..33220739 (+ strand)
Length: 3044
Functional Information:
Description: Similar to Pectinesterase 3. [Q43111, Phaseolus vulgaris]
GO: Biological Process: cell wall modification (GO:0042545)
Cellular Component: cell wall (GO:0005618)
Molecular Function: enzyme inhibitor activity (GO:0004857)
Molecular Function: pectinesterase activity (GO:0030599)
InterPro: Pectinesterase, catalytic (IPR000070)
Pectinesterase inhibitor domain (IPR006501)
Pectin lyase fold/virulence factor (IPR011050)
Pectin lyase fold (IPR012334)
Pectinesterase, active site (IPR018040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.46,29.21,20.04,3.80,66.44,17.75,14.85,7.16
Arabidopsis thaliana homolog: AT1G53840.1, AT3G14300.1
Automatic updates:
Name: NM_001370868 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pectinesterase 3-like (LOC100777128), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:33217696..33217858 (+ strand)
Length: 163
Type: five_prime_UTR
Position: Chr09:33217859..33218930 (+ strand)
Length: 1072
Type: CDS
Position: Chr09:33219726..33220408 (+ strand)
Length: 683
Type: CDS
Position: Chr09:33220409..33220739 (+ strand)
Length: 331
Type: three_prime_UTR

>Vigan.09G186700.01 class=Sequence position=Chr09:33217696..33220739 (+ strand)
CACACGTTGA ATCGTAGGAC TCGGTAACGT GTCTTTTATT TGTTTATTTT TTCTTTTATG AAATGCCACC AAAGTTCCAT
ATAAAAGGGA AAGTATAGAA GCTAGAAAGA GCCATTTTTT AGTACAGAGT AGATAGTGTG AGCAAACCAA ACAGATCCTA
AGAATGGATA CAATTAAGTC ATTCAAGGGC TACGGCAAAG TTGACGAGCT GGAACAGCAA GCCTATCAGA AGAAGACACG
TAAGCGAATC ATAATCATCA CAGTGTCTTC CATCGTTCTA ATTGCGGTCA TCATCGCTGC GGTTGCAGGG GTCGTCATAC
ACAACCGCAA CAACAAATCG TCGCCCTCAT CTGACTCGGC CCAGCAAACT CAGTTGTCTC CGGCCGCGTC ACTCAAAGCG
GTGTGCAAGG CTACTCGCTA CCCTGACTCC TGCTTCTCCT CCATATCCTC GTTGCCGGAA TCCAACACAA CCGACCCGGA
GCTCCTCTTC AAGCTCTCGC TACGCGTCGC CATTGACGAG CTCTACAAGC TCTCCAGCTT CCCTTCCAAG CTCCGTGCCA
ATGCGGAGCA CGACGCGCGT CTGCAGAAGG CAATCGACGT CTGCAGTTCC GTCATCGGTG ACGCGTTGGA CCGCCTCAAC
GACTCGATCT CCGCGCTCGG AACCGTCACC GGAAGGATTG TTTCTTCGGC GAGCGTCAAC GACGTGGAGA CGTGGCTCAG
CGCGACGCTC ACGGACCAGG ACACGTGCCT CGACGCGCTT GGCGAGCTGA ACTCCACCGC CGCTCGCGGC TCTCTCCAGG
AGATCGAGAC CGCCATGAGG AACTCCACGG AGTTCGCGAG CAACAGCTTG GCTATCGTGA CGAAGATCCT TCGGTTGCTG
TCGCAGTTCG AGAAACCGGA TCACCACCGG CGGCTGCTAG AGTTTCCGCA GTGGCTGGGC GCGGCGGAGC GAAGGCTGTT
GGAGGAGAAG AACAACGAAT CGACGCCGGA TGCTGTGGTG GCGAAGGACG GTAGTGAACA GTTCAAGACG ATCGGCGAGG
CGCTGAAGTT GGTGAAGAAG AAGAGCGAGA AGAGATTCTC GGTGTACGTG AAGGAAGGGA GCTACGTGGA GAACATCGAT
TTGGATAAGA ACACGTGGAA TGTGATGATC TATGGTGATG GGAAGGACAA AACCGTCATC GTCGGTAGCC GGAACTTCAT
AGACGGAACG CCGACTTTCG AAACTGCAAC TTTCGGTAAA TATAAATTAT TTATTTATTT ATTTTCTGCA TTTTTTTTAT
CACCAGTTAC TGTGCTTTTA ATTCTATGTT TGAAAATTGG TGCATTATTT AAGAAGGTCT AGAATGATTC TATTTTCTGT
TGGAGTTTGG TTTGATTATT TCCCTTTCAT ACTTCGGCAT GAATTTTGTT CTGTGTGCAT AATCAGATTT ATGGAAAATG
AAAACAAATT GATTGTATAG CTGCAATTAA TTTGAGTGAT TTATTGATAA AATATACCCG ATGATTTCAT AGTTATATAA
AAAAATATTC TTAACTTTTT ATGTTCATAT TAAAACATAT GAAGGAAAGT ATACTGAATA TAACAAGTGC CGAATTTGTG
AGGATTCATC ATTGTTATGG AAAAAAAAAC AAGTTTGATG GAGAAGCATG TGGCAAGTGC GTTAGTGCTT CTGGCGAGCC
ACATGCTATC AAGTGTGATC ATGTGTCCCC TCTCGCACAA TTGGCTGTTT GTCAGCTCTT TCTGTAACAC GACACATCAA
GCATTATGCT GTTTTCTGCA TCATTCATGA CCTCCCATGT GATGTCTGCT TTACCTTCTC ATACCTAACA TCCACCTATA
TCCAACATCC ATAAATGCTG TCCTCAGACA ATAGATATGG ATTTAGGTGT TGACCTGTTT TTATGCTTGA AACTATGATG
TTGGTACAAA ATTTAACAAA TTAACTTTTG CATTAAACAC ACGAATACGA TAGTGTAAGA TAGGATACCA TCACTGCCTA
TTACTAACAG GAATTTCTTA CTTTTTGCAG CTGTTAAAGG CAAGGGATTC ATAGCCAAAG ACATAGGGTT TGTGAACAAT
GCAGGTGCTT CAAAGCACCA GGCTGTGGCA TTGAGATCTG GGTCAGATCG CTCTGTGTTC TTCAGATGCT CATTTGATGG
CTTCCAAGAT ACCCTCTATG CTCATTCCAA CCGCCAATTC TACCGTGACT GTGACATTAC AGGCACCATA GACTTCATAT
TTGGCAATGC AGCAGTTGTG TTCCAAAATT GCAAAATAAT GCCTAGACAG CCTTTACCAA ACCAGTTCAA CACCATCACA
GCTCAGGGAA AGAAAGATCC TAACCAGAAC ACTGGAATTA TAGTTCAGAA ATCAACGATC ACTCCTCTGG GTAACAATCT
CACTGCTCCC ACATACCTTG GCAGGCCATG GAAAGATTTC TCCACCACTG TCATCATGCA ATCTGATATT GGGTCATTCT
TGAATCCGGT GGGGTGGATG AGTTGGGTCC CTAATGTGGA ACCTGCAAGT ACCATCTTCT ACGCAGAATA TCAGAATAAT
GGGCCAGGAG CTGACGTGTC CAAGAGGGTC AAATGGGCCG GTTATAAGCC CACTCTCACG GACACCGATG CAGATAGGTT
CACTGTGGAG TCCTTTATCC AAGGCCCTGA TTGGTTGCCA AATGCAGCTG TGCAGTTTGA TTCCACCTTG TGATACAAAA
AATGTGTGGG TATCAACTGT TACTCATATT TAACTTGTCT TTTTAATCAC GCTCTTCTAA CATGTATTAC TACACTACAC
GCATTTTTTT ACCTACTTTT TATTGGTTTA TAAAATTCTT TTGTTTGGAA AATATGTCAG ATTTCAGATG AAAATAAAAA
AAAGAAATGA ATATGTTAAT TCCAAAGGAA GCTACTGTTT GAATATTCTG CCAGCTTGGT GAACAATTGC ATGTCCTTTA
AAGCATTTAT ACTGAAAGGA AAAATTGTAA GGTTATTAAA TATGCCATTG ATTGTTTATG AAAATTATTT TATGTTAGAA
AAAC

>Vigan.09G186700.01
CACACGTTGA ATCGTAGGAC TCGGTAACGT GTCTTTTATT TGTTTATTTT TTCTTTTATG AAATGCCACC AAAGTTCCAT
ATAAAAGGGA AAGTATAGAA GCTAGAAAGA GCCATTTTTT AGTACAGAGT AGATAGTGTG AGCAAACCAA ACAGATCCTA
AGAATGGATA CAATTAAGTC ATTCAAGGGC TACGGCAAAG TTGACGAGCT GGAACAGCAA GCCTATCAGA AGAAGACACG
TAAGCGAATC ATAATCATCA CAGTGTCTTC CATCGTTCTA ATTGCGGTCA TCATCGCTGC GGTTGCAGGG GTCGTCATAC
ACAACCGCAA CAACAAATCG TCGCCCTCAT CTGACTCGGC CCAGCAAACT CAGTTGTCTC CGGCCGCGTC ACTCAAAGCG
GTGTGCAAGG CTACTCGCTA CCCTGACTCC TGCTTCTCCT CCATATCCTC GTTGCCGGAA TCCAACACAA CCGACCCGGA
GCTCCTCTTC AAGCTCTCGC TACGCGTCGC CATTGACGAG CTCTACAAGC TCTCCAGCTT CCCTTCCAAG CTCCGTGCCA
ATGCGGAGCA CGACGCGCGT CTGCAGAAGG CAATCGACGT CTGCAGTTCC GTCATCGGTG ACGCGTTGGA CCGCCTCAAC
GACTCGATCT CCGCGCTCGG AACCGTCACC GGAAGGATTG TTTCTTCGGC GAGCGTCAAC GACGTGGAGA CGTGGCTCAG
CGCGACGCTC ACGGACCAGG ACACGTGCCT CGACGCGCTT GGCGAGCTGA ACTCCACCGC CGCTCGCGGC TCTCTCCAGG
AGATCGAGAC CGCCATGAGG AACTCCACGG AGTTCGCGAG CAACAGCTTG GCTATCGTGA CGAAGATCCT TCGGTTGCTG
TCGCAGTTCG AGAAACCGGA TCACCACCGG CGGCTGCTAG AGTTTCCGCA GTGGCTGGGC GCGGCGGAGC GAAGGCTGTT
GGAGGAGAAG AACAACGAAT CGACGCCGGA TGCTGTGGTG GCGAAGGACG GTAGTGAACA GTTCAAGACG ATCGGCGAGG
CGCTGAAGTT GGTGAAGAAG AAGAGCGAGA AGAGATTCTC GGTGTACGTG AAGGAAGGGA GCTACGTGGA GAACATCGAT
TTGGATAAGA ACACGTGGAA TGTGATGATC TATGGTGATG GGAAGGACAA AACCGTCATC GTCGGTAGCC GGAACTTCAT
AGACGGAACG CCGACTTTCG AAACTGCAAC TTTCGCTGTT AAAGGCAAGG GATTCATAGC CAAAGACATA GGGTTTGTGA
ACAATGCAGG TGCTTCAAAG CACCAGGCTG TGGCATTGAG ATCTGGGTCA GATCGCTCTG TGTTCTTCAG ATGCTCATTT
GATGGCTTCC AAGATACCCT CTATGCTCAT TCCAACCGCC AATTCTACCG TGACTGTGAC ATTACAGGCA CCATAGACTT
CATATTTGGC AATGCAGCAG TTGTGTTCCA AAATTGCAAA ATAATGCCTA GACAGCCTTT ACCAAACCAG TTCAACACCA
TCACAGCTCA GGGAAAGAAA GATCCTAACC AGAACACTGG AATTATAGTT CAGAAATCAA CGATCACTCC TCTGGGTAAC
AATCTCACTG CTCCCACATA CCTTGGCAGG CCATGGAAAG ATTTCTCCAC CACTGTCATC ATGCAATCTG ATATTGGGTC
ATTCTTGAAT CCGGTGGGGT GGATGAGTTG GGTCCCTAAT GTGGAACCTG CAAGTACCAT CTTCTACGCA GAATATCAGA
ATAATGGGCC AGGAGCTGAC GTGTCCAAGA GGGTCAAATG GGCCGGTTAT AAGCCCACTC TCACGGACAC CGATGCAGAT
AGGTTCACTG TGGAGTCCTT TATCCAAGGC CCTGATTGGT TGCCAAATGC AGCTGTGCAG TTTGATTCCA CCTTGTGATA
CAAAAAATGT GTGGGTATCA ACTGTTACTC ATATTTAACT TGTCTTTTTA ATCACGCTCT TCTAACATGT ATTACTACAC
TACACGCATT TTTTTACCTA CTTTTTATTG GTTTATAAAA TTCTTTTGTT TGGAAAATAT GTCAGATTTC AGATGAAAAT
AAAAAAAAGA AATGAATATG TTAATTCCAA AGGAAGCTAC TGTTTGAATA TTCTGCCAGC TTGGTGAACA ATTGCATGTC
CTTTAAAGCA TTTATACTGA AAGGAAAAAT TGTAAGGTTA TTAAATATGC CATTGATTGT TTATGAAAAT TATTTTATGT
TAGAAAAAC

>Vigan.09G186700.01
ATGGATACAA TTAAGTCATT CAAGGGCTAC GGCAAAGTTG ACGAGCTGGA ACAGCAAGCC TATCAGAAGA AGACACGTAA
GCGAATCATA ATCATCACAG TGTCTTCCAT CGTTCTAATT GCGGTCATCA TCGCTGCGGT TGCAGGGGTC GTCATACACA
ACCGCAACAA CAAATCGTCG CCCTCATCTG ACTCGGCCCA GCAAACTCAG TTGTCTCCGG CCGCGTCACT CAAAGCGGTG
TGCAAGGCTA CTCGCTACCC TGACTCCTGC TTCTCCTCCA TATCCTCGTT GCCGGAATCC AACACAACCG ACCCGGAGCT
CCTCTTCAAG CTCTCGCTAC GCGTCGCCAT TGACGAGCTC TACAAGCTCT CCAGCTTCCC TTCCAAGCTC CGTGCCAATG
CGGAGCACGA CGCGCGTCTG CAGAAGGCAA TCGACGTCTG CAGTTCCGTC ATCGGTGACG CGTTGGACCG CCTCAACGAC
TCGATCTCCG CGCTCGGAAC CGTCACCGGA AGGATTGTTT CTTCGGCGAG CGTCAACGAC GTGGAGACGT GGCTCAGCGC
GACGCTCACG GACCAGGACA CGTGCCTCGA CGCGCTTGGC GAGCTGAACT CCACCGCCGC TCGCGGCTCT CTCCAGGAGA
TCGAGACCGC CATGAGGAAC TCCACGGAGT TCGCGAGCAA CAGCTTGGCT ATCGTGACGA AGATCCTTCG GTTGCTGTCG
CAGTTCGAGA AACCGGATCA CCACCGGCGG CTGCTAGAGT TTCCGCAGTG GCTGGGCGCG GCGGAGCGAA GGCTGTTGGA
GGAGAAGAAC AACGAATCGA CGCCGGATGC TGTGGTGGCG AAGGACGGTA GTGAACAGTT CAAGACGATC GGCGAGGCGC
TGAAGTTGGT GAAGAAGAAG AGCGAGAAGA GATTCTCGGT GTACGTGAAG GAAGGGAGCT ACGTGGAGAA CATCGATTTG
GATAAGAACA CGTGGAATGT GATGATCTAT GGTGATGGGA AGGACAAAAC CGTCATCGTC GGTAGCCGGA ACTTCATAGA
CGGAACGCCG ACTTTCGAAA CTGCAACTTT CGCTGTTAAA GGCAAGGGAT TCATAGCCAA AGACATAGGG TTTGTGAACA
ATGCAGGTGC TTCAAAGCAC CAGGCTGTGG CATTGAGATC TGGGTCAGAT CGCTCTGTGT TCTTCAGATG CTCATTTGAT
GGCTTCCAAG ATACCCTCTA TGCTCATTCC AACCGCCAAT TCTACCGTGA CTGTGACATT ACAGGCACCA TAGACTTCAT
ATTTGGCAAT GCAGCAGTTG TGTTCCAAAA TTGCAAAATA ATGCCTAGAC AGCCTTTACC AAACCAGTTC AACACCATCA
CAGCTCAGGG AAAGAAAGAT CCTAACCAGA ACACTGGAAT TATAGTTCAG AAATCAACGA TCACTCCTCT GGGTAACAAT
CTCACTGCTC CCACATACCT TGGCAGGCCA TGGAAAGATT TCTCCACCAC TGTCATCATG CAATCTGATA TTGGGTCATT
CTTGAATCCG GTGGGGTGGA TGAGTTGGGT CCCTAATGTG GAACCTGCAA GTACCATCTT CTACGCAGAA TATCAGAATA
ATGGGCCAGG AGCTGACGTG TCCAAGAGGG TCAAATGGGC CGGTTATAAG CCCACTCTCA CGGACACCGA TGCAGATAGG
TTCACTGTGG AGTCCTTTAT CCAAGGCCCT GATTGGTTGC CAAATGCAGC TGTGCAGTTT GATTCCACCT TGTGA

>Vigan.09G186700.01
MDTIKSFKGY GKVDELEQQA YQKKTRKRII IITVSSIVLI AVIIAAVAGV VIHNRNNKSS PSSDSAQQTQ LSPAASLKAV
CKATRYPDSC FSSISSLPES NTTDPELLFK LSLRVAIDEL YKLSSFPSKL RANAEHDARL QKAIDVCSSV IGDALDRLND
SISALGTVTG RIVSSASVND VETWLSATLT DQDTCLDALG ELNSTAARGS LQEIETAMRN STEFASNSLA IVTKILRLLS
QFEKPDHHRR LLEFPQWLGA AERRLLEEKN NESTPDAVVA KDGSEQFKTI GEALKLVKKK SEKRFSVYVK EGSYVENIDL
DKNTWNVMIY GDGKDKTVIV GSRNFIDGTP TFETATFAVK GKGFIAKDIG FVNNAGASKH QAVALRSGSD RSVFFRCSFD
GFQDTLYAHS NRQFYRDCDI TGTIDFIFGN AAVVFQNCKI MPRQPLPNQF NTITAQGKKD PNQNTGIIVQ KSTITPLGNN
LTAPTYLGRP WKDFSTTVIM QSDIGSFLNP VGWMSWVPNV EPASTIFYAE YQNNGPGADV SKRVKWAGYK PTLTDTDADR
FTVESFIQGP DWLPNAAVQF DSTL*