GBrowse Details

Vigan.09G186600.01

Basic Information:
Name: Vigan.09G186600.01
Multiple alignment
Variant Information
Position: Chr09:33197264..33202280 (+ strand)
Length: 5017
Functional Information:
Description: Similar to Pectinesterase. [V7ANW5, Phaseolus vulgaris]
GO: Biological Process: cell wall modification (GO:0042545)
Cellular Component: cell wall (GO:0005618)
Molecular Function: enzyme inhibitor activity (GO:0004857)
Molecular Function: pectinesterase activity (GO:0030599)
InterPro: Pectinesterase, catalytic (IPR000070)
Pectinesterase inhibitor domain (IPR006501)
Pectin lyase fold/virulence factor (IPR011050)
Pectin lyase fold (IPR012334)
Pectinesterase, active site (IPR018040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.45,2.06,76.55,8.54,173.70,90.59,63.71,38.97
Arabidopsis thaliana homolog: AT1G53830.1, AT3G14310.1
Automatic updates:
Name: NM_001370867 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pectinesterase/pectinesterase inhibitor (LOC100777646), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:33197264..33197377 (+ strand)
Length: 114
Type: five_prime_UTR
Position: Chr09:33197378..33198491 (+ strand)
Length: 1114
Type: CDS
Position: Chr09:33201275..33201966 (+ strand)
Length: 692
Type: CDS
Position: Chr09:33201967..33202280 (+ strand)
Length: 314
Type: three_prime_UTR

>Vigan.09G186600.01 class=Sequence position=Chr09:33197264..33202280 (+ strand)
TTTCAATTAA AAAAAATCTA AATAGTAACT CTAATCCAAC GTTATAAGTG ATTGTTCTTC CAGTGTCTCT GGGCACCTTC
TCCATCTCTC TCTTTCTTAC TATCAAACTA AGCCATGACT AACCCAAAAC TTCCCTACAC CGGAATCTCA GATTCCGGTA
ACCACACTTC TCTCTCTAAA AAATCTTTCT ACAAGAAGAA GCTTTTCCTC ACTCTTTTCG CCACCCTCCT GGTGGCAGCC
TCCGTAGCGG CCATTGTCGC TGGAGTGAAA AACAAAAATC AAAAGTCCGA CGGTAGCAGC AGCAGCTCTC TGTCCCTCTC
CCACCAGTCC CACGCGATTC TTAAGAGCGC GTGTAGTTCT ACATTCTACC CAGAACTCTG CTTCTCTGCT GTGGCTTCAG
AACCCAACGT CACTCACAAA GTAACCTCTC ACCGTGACGT CATTAAACTC TCCCTCGACA TCACCACGCG CGCCGTGGAG
CACAACTACT TCACCGTGAA GAAGCTCACC ACCAAACACG GCCTAACGAA GCGCGAGAAA ACCGCGCTCC ACGATTGTCT
CGAAACCATT GACGAGACCC TCGACGAGCT GAAAGAGGCC AAGCGCGATC TCGAGCTCTA CCCCAACAAG AAAACACTGT
ACCAGCACGC CGACGATCTG AAAACCTTAA TCAGCGCCGC CATCACCAAC CAGGTCACGT GCCTCGACGG CTTCTCGCAC
GAGGACGCCG ATAAGCGCAT CCGGAAGGCT CTGGAAAAAG GCCAGGTGCA CGTGGAACAC ATGTGCAGCA ACGCACTGGC
CATGACCAAG AACATGACCG ACACCGACAT TGCCAACTTC GAACAGAGCA CGAAGCTCCG AGACAACAAC GTTGGCCAAA
ATAGAAAGCT CTTGGCCGAG GAGAGCAATG CTGGTGTTGT CTGGCCGGAG TGGATTTCTG CTACCGACAG GAGGCTGCTT
CAGGCAACGA CAGTGAAGGC CGATGTGGTG GTGGCTGCGG ACGGCAGTGG GAACTTTAAG ACGGTGTCGG AGGCAGTGGA
CGCGGCTCCG TTGAAGAGTA GTAAAAGATT TGTTATAAGG ATAAAGGCTG GAGTTTACAA AGAAAATGTA GAAGTTCCAA
AGAAGAAGAC CAACATCATG TTCTTGGGTG ATGGAAGAAC CACTACCATC ATCACCGCCA GCAGAAACGT CGTCGACGGT
AGCACCACCT TCCACTCTGC CACCGTCGGT GAGTTTATCT ATCCTTCATT CATCAGCATT TTCATTTTTC TAACCATATT
AAACAAACAA TCCCACAAGT CCATAACATT TAACACCATT ACTGTAACTA TGAGAACTAC AAATAAATCT CTAACAGTGA
ATAAAAAATT CAACTTTCTT ACTTCTTTCT TCAAAATCTA AGTATACAAT AAGATGGGTA TAACGGTAAT GTCGCTTTTT
AATTCAGGAC CCTACCATTT GTAAAAAGGC GTGGTCACAA AAGATATTTG ATATTCGATA AGATCGTAAA ATCTCTTTCA
TTTCATCCTT GGCGTGTTTG TTTAACTCAT TGTGTTATGT TAGTATATTT ATGCAGTCAT GTAATTTGCT TCTAAAAAAT
GCTGTGCACG TGTTGTTTTC AGAAAATGCT TTGACATTTT TGTTTTAATG TGACATTGAA AGAACGCCGA AGTTTCTGAC
AAGCGACAAC TAATACAAAA GTTTTCTACA TTTTACTGTA GCGTGCATCT GTCAGAAAAT TAAGTGGAAA AATTAAAATG
TTGTTAATCT CTTTTTCTGG AGAGAATGAG TTGTTAGTGA GATGATTGGT GTAGAATATG GTTAGAGCAA CGACAACATA
AATAAACAAT GTTAACTCCT ATGATTTCGG GATATTAAGG TCCCAAAAGG AGACAGCAAG AACAATAATT CCGGGTCGGA
TCGCAGTGTG ATCCTAACTT TTCACCATAA CAATGATTTA CAAACCTATT GCTTCAAATT CAACAATCAT TTTCAATAAA
TACAGTCAGC ACCCACATGA GTTGGTCTCC ATTCTCAGCA AGGAAACTGT TCTTTTTGTT GTCTTGTGCT CGTGCTTTTC
TGCCATTCTA TGTTTTTATT TAATTCTCAT GTCTGTTTCA AAATCATTTT GAATACATCT TTCTTCTTCG GCTTGTCAAT
TTTCAAGGTT TCTGTGTGCT GTCGTACACT GGAAAATATG ATTGAAAAGA AAATTAGAAG ATTAGAAAAT TACGTAAATG
TTGTGTTTAT AGAAGGTTAG TTTTATATTT CTCAAATAAA TTACATAATT CAAAACAAAT ATTTTTCCTC TGACGATATT
CAATTCACCA ATCTATGTGT TGTCCCACTT TCACTATGGA TTCCCCGACT GAAAGAGACA CTATATTCTT TCTACCAGTG
TTTATATTTT GCTTTCTAAG AGGATAAAGT TTCTTTAATA TAAAAAAAGG TTTACACTTT TTCTTTTTAT AAAAGTTAAA
CATGTTTTTC AAAAGTCACT ATAGTTATAC ATGTTAGGAG CATTTCTCTA TAAAATGTTT TAAGAAAAAA ATGATGAAGT
AAACTTTTCT ATAAATTAAA ATTAACTTAT AAACGAGTTA ATTTTTTTTT AAATTATCTA AAAAAACTCT TTCAACATTT
ATACAAGAAA AGCATTTTAG TTTGTATAAA AAATTCTTTT GAATTTTCTT TTTTTTTTTT TATAAGTGGG AAAACTACTC
CAGCTAAGAG GAAAAGTATG TTAGCTTGTA GGAGAAAGGA TTGGAATACA GCTAGACAAA ATTTATTTAA CTTTTTTTTA
TCAGCAAATT TATTTAACTT TGGCTTTATA TATGCCATTG TTGTTGTCCT GTCTTTCTCG GCATTTCCCT TTTCCACTTT
ATAGCCTGAA TTTGATGCCA CCAACATTCA CGCATGATGC TGTTCTCTGA TTAATTTTAA TAATATGCTA TGAACTTTTT
TTGTTATATT TATTATAGAA TCAAAATTTT AGCTCTAATT AAAAATAATG CTTTTTACTA ATATAATATA TAACCCCTTA
ATGCACAATC TAAGCACCCG TTTCCTTTTC CTTAACATGT TCAGCTAACC TGTCATTATC CTGTGATCTA TATTCGTTTA
ATTGTTAGTA AAATCCAACT TGCACATGTC GCATCTTATT TTGTATTATG CCTCATCTTA GCTTAATTGA ATAACATTTC
CCTAAGTCTG TCATATATAT GTCGTACCTG TAAGCTTTTA TTTGTACCCA CATGCCCCAA GAGAAGCATG CAATTCAAGT
CTCACTTTTG TACTTACAAG TTACCACTAG ATATGTCTTT CGTTTGGACA AAACCATTCA ATCATATAGT CTATTCATGG
TATCTCTTGT TTTAATTGCA TGGTTAAATA ATATTAGATT AATTATTTTG TATAAATATG TTTCAAGAAA GAAAATGAGC
ATATCTAGAT AGAGATTTTG CTGAGTATAA GTCTTCAAAA TTTTACTTTT TTTTTGTATC ACTTCAAAAG TTCTTTTATT
ATTATTATAA GTATGTGCGT ATAAATTCAC GTTCATATAT TTTATCCAAT GCGGTACTTT ATTTTTATTT TAACACGGAA
AAAATGAGAA AATAGAATAT TATATAAGGA TAAAAACCTA TAAATTGACT GTATTAAAGT TTTGAGTTGA GAATGATTTT
AATCTCTTAT GTAGTTGGAT TTACACCTTA GTATTGTGTC TCTCTGGTGA ATTTTCTCCA TCAATAAACC CACCATATTT
CACACTTCAA ATTCACCGTT AAAGAGGAGA AACTATAGAC TATATAACAC TGATTATGAT AGATCAAGGA ATTCAAATCA
AGTTGATTAT TGAGGCTTGA AAATATATAA TAAAGGTGAA TACACACCTC ACACGCAACC GTAGGGTCTA AAAAGTAAGA
AATGGTTGGA CCCATATTGT TATATTTCCA TGTTTGGTTC ATTTTGTGTA GTCAATTTGG AAGTAACTTT TTGTTTGTTT
TGGTGTTGCA GCTGTGGTGG GTGAAAATTT CCTAGCTAGG GACATAACAT TCCAAAACAC AGCAGGACCC TCAAAGCACC
AAGCAGTGGC TCTAAGAGTA GGAGGGGACC TATCAGCATT TTACAACTGT GACATCTTAG CATACCAAGA CACTCTCTAT
GTCCACAACA ACCGTCAATT CTTTGTCAAG TGTCTCATTG CAGGGACAGT GGATTTCATC TTTGGTAACT CTGCAGTGGT
GTTTCAAGAC TGTGACATCC ATGCCAGGCG TCCGGACTCG GGTCAGAAGA ACATGGTGAC GGCCCAAGGA AGGGTAGACC
CTAACCAAAA CACTGGCATT GTGATCCAGA AGTGTAGGAT TGGTGCAACT TCAGATTTGG AGTCTGTGAA GAAGAGTTTC
AAGACCTATC TTGGGAGACC ATGGAAGGAG TATTCAAGAA CTGTGATCAT GCAGAGTAGT ATCAGTGATG TGATTGACCC
TGTTGGGTGG CATGAGTGGA GTGGCAACTT TGCATTGAGC ACTTTGGTCT ATAGGGAATA TCAGAACACT GGGCCTGGTG
CTGGAACCTC CAATAGGGTC TCTTGGAAAG GGTTCGAAGT TATAACTGAT GCTGCTGAAG CCCGGGCTTT TACCCCTGGA
AGCTTCATTG GAGGCTCTAG CTGGTTGGAC TCTACGGGCT TTCCTTTCTC TCTTGGCTTG TAAATTAGGT TCAGGTTGTG
ATTGTTACAT GTTGTTGTTA TGTGGTGGTA GAAAGGAACA AAGTTGACCC CAAGATTTCA AACAAGAGGG GAAAGAGAGT
GATTGATGCA GAGGATGTTT TTTTTTCTTT TTAGAAAAAT GTCTTTGACT TGTATTGGTT GGGTTTTGGA ACACACCATG
TTCTTCAACC TTAGGCTATT TATTGTGATA TCACCCACTG GCTAAATAAT GGTGAAAATA AGTGTATGTT ATGATCTTGC
ATGATCCAAA CATTGATTTA CTTGAAAATA TTTATGTCAT CTTTTATTCG GTCTGGT

>Vigan.09G186600.01
TTTCAATTAA AAAAAATCTA AATAGTAACT CTAATCCAAC GTTATAAGTG ATTGTTCTTC CAGTGTCTCT GGGCACCTTC
TCCATCTCTC TCTTTCTTAC TATCAAACTA AGCCATGACT AACCCAAAAC TTCCCTACAC CGGAATCTCA GATTCCGGTA
ACCACACTTC TCTCTCTAAA AAATCTTTCT ACAAGAAGAA GCTTTTCCTC ACTCTTTTCG CCACCCTCCT GGTGGCAGCC
TCCGTAGCGG CCATTGTCGC TGGAGTGAAA AACAAAAATC AAAAGTCCGA CGGTAGCAGC AGCAGCTCTC TGTCCCTCTC
CCACCAGTCC CACGCGATTC TTAAGAGCGC GTGTAGTTCT ACATTCTACC CAGAACTCTG CTTCTCTGCT GTGGCTTCAG
AACCCAACGT CACTCACAAA GTAACCTCTC ACCGTGACGT CATTAAACTC TCCCTCGACA TCACCACGCG CGCCGTGGAG
CACAACTACT TCACCGTGAA GAAGCTCACC ACCAAACACG GCCTAACGAA GCGCGAGAAA ACCGCGCTCC ACGATTGTCT
CGAAACCATT GACGAGACCC TCGACGAGCT GAAAGAGGCC AAGCGCGATC TCGAGCTCTA CCCCAACAAG AAAACACTGT
ACCAGCACGC CGACGATCTG AAAACCTTAA TCAGCGCCGC CATCACCAAC CAGGTCACGT GCCTCGACGG CTTCTCGCAC
GAGGACGCCG ATAAGCGCAT CCGGAAGGCT CTGGAAAAAG GCCAGGTGCA CGTGGAACAC ATGTGCAGCA ACGCACTGGC
CATGACCAAG AACATGACCG ACACCGACAT TGCCAACTTC GAACAGAGCA CGAAGCTCCG AGACAACAAC GTTGGCCAAA
ATAGAAAGCT CTTGGCCGAG GAGAGCAATG CTGGTGTTGT CTGGCCGGAG TGGATTTCTG CTACCGACAG GAGGCTGCTT
CAGGCAACGA CAGTGAAGGC CGATGTGGTG GTGGCTGCGG ACGGCAGTGG GAACTTTAAG ACGGTGTCGG AGGCAGTGGA
CGCGGCTCCG TTGAAGAGTA GTAAAAGATT TGTTATAAGG ATAAAGGCTG GAGTTTACAA AGAAAATGTA GAAGTTCCAA
AGAAGAAGAC CAACATCATG TTCTTGGGTG ATGGAAGAAC CACTACCATC ATCACCGCCA GCAGAAACGT CGTCGACGGT
AGCACCACCT TCCACTCTGC CACCGTCGCT GTGGTGGGTG AAAATTTCCT AGCTAGGGAC ATAACATTCC AAAACACAGC
AGGACCCTCA AAGCACCAAG CAGTGGCTCT AAGAGTAGGA GGGGACCTAT CAGCATTTTA CAACTGTGAC ATCTTAGCAT
ACCAAGACAC TCTCTATGTC CACAACAACC GTCAATTCTT TGTCAAGTGT CTCATTGCAG GGACAGTGGA TTTCATCTTT
GGTAACTCTG CAGTGGTGTT TCAAGACTGT GACATCCATG CCAGGCGTCC GGACTCGGGT CAGAAGAACA TGGTGACGGC
CCAAGGAAGG GTAGACCCTA ACCAAAACAC TGGCATTGTG ATCCAGAAGT GTAGGATTGG TGCAACTTCA GATTTGGAGT
CTGTGAAGAA GAGTTTCAAG ACCTATCTTG GGAGACCATG GAAGGAGTAT TCAAGAACTG TGATCATGCA GAGTAGTATC
AGTGATGTGA TTGACCCTGT TGGGTGGCAT GAGTGGAGTG GCAACTTTGC ATTGAGCACT TTGGTCTATA GGGAATATCA
GAACACTGGG CCTGGTGCTG GAACCTCCAA TAGGGTCTCT TGGAAAGGGT TCGAAGTTAT AACTGATGCT GCTGAAGCCC
GGGCTTTTAC CCCTGGAAGC TTCATTGGAG GCTCTAGCTG GTTGGACTCT ACGGGCTTTC CTTTCTCTCT TGGCTTGTAA
ATTAGGTTCA GGTTGTGATT GTTACATGTT GTTGTTATGT GGTGGTAGAA AGGAACAAAG TTGACCCCAA GATTTCAAAC
AAGAGGGGAA AGAGAGTGAT TGATGCAGAG GATGTTTTTT TTTCTTTTTA GAAAAATGTC TTTGACTTGT ATTGGTTGGG
TTTTGGAACA CACCATGTTC TTCAACCTTA GGCTATTTAT TGTGATATCA CCCACTGGCT AAATAATGGT GAAAATAAGT
GTATGTTATG ATCTTGCATG ATCCAAACAT TGATTTACTT GAAAATATTT ATGTCATCTT TTATTCGGTC TGGT

>Vigan.09G186600.01
ATGACTAACC CAAAACTTCC CTACACCGGA ATCTCAGATT CCGGTAACCA CACTTCTCTC TCTAAAAAAT CTTTCTACAA
GAAGAAGCTT TTCCTCACTC TTTTCGCCAC CCTCCTGGTG GCAGCCTCCG TAGCGGCCAT TGTCGCTGGA GTGAAAAACA
AAAATCAAAA GTCCGACGGT AGCAGCAGCA GCTCTCTGTC CCTCTCCCAC CAGTCCCACG CGATTCTTAA GAGCGCGTGT
AGTTCTACAT TCTACCCAGA ACTCTGCTTC TCTGCTGTGG CTTCAGAACC CAACGTCACT CACAAAGTAA CCTCTCACCG
TGACGTCATT AAACTCTCCC TCGACATCAC CACGCGCGCC GTGGAGCACA ACTACTTCAC CGTGAAGAAG CTCACCACCA
AACACGGCCT AACGAAGCGC GAGAAAACCG CGCTCCACGA TTGTCTCGAA ACCATTGACG AGACCCTCGA CGAGCTGAAA
GAGGCCAAGC GCGATCTCGA GCTCTACCCC AACAAGAAAA CACTGTACCA GCACGCCGAC GATCTGAAAA CCTTAATCAG
CGCCGCCATC ACCAACCAGG TCACGTGCCT CGACGGCTTC TCGCACGAGG ACGCCGATAA GCGCATCCGG AAGGCTCTGG
AAAAAGGCCA GGTGCACGTG GAACACATGT GCAGCAACGC ACTGGCCATG ACCAAGAACA TGACCGACAC CGACATTGCC
AACTTCGAAC AGAGCACGAA GCTCCGAGAC AACAACGTTG GCCAAAATAG AAAGCTCTTG GCCGAGGAGA GCAATGCTGG
TGTTGTCTGG CCGGAGTGGA TTTCTGCTAC CGACAGGAGG CTGCTTCAGG CAACGACAGT GAAGGCCGAT GTGGTGGTGG
CTGCGGACGG CAGTGGGAAC TTTAAGACGG TGTCGGAGGC AGTGGACGCG GCTCCGTTGA AGAGTAGTAA AAGATTTGTT
ATAAGGATAA AGGCTGGAGT TTACAAAGAA AATGTAGAAG TTCCAAAGAA GAAGACCAAC ATCATGTTCT TGGGTGATGG
AAGAACCACT ACCATCATCA CCGCCAGCAG AAACGTCGTC GACGGTAGCA CCACCTTCCA CTCTGCCACC GTCGCTGTGG
TGGGTGAAAA TTTCCTAGCT AGGGACATAA CATTCCAAAA CACAGCAGGA CCCTCAAAGC ACCAAGCAGT GGCTCTAAGA
GTAGGAGGGG ACCTATCAGC ATTTTACAAC TGTGACATCT TAGCATACCA AGACACTCTC TATGTCCACA ACAACCGTCA
ATTCTTTGTC AAGTGTCTCA TTGCAGGGAC AGTGGATTTC ATCTTTGGTA ACTCTGCAGT GGTGTTTCAA GACTGTGACA
TCCATGCCAG GCGTCCGGAC TCGGGTCAGA AGAACATGGT GACGGCCCAA GGAAGGGTAG ACCCTAACCA AAACACTGGC
ATTGTGATCC AGAAGTGTAG GATTGGTGCA ACTTCAGATT TGGAGTCTGT GAAGAAGAGT TTCAAGACCT ATCTTGGGAG
ACCATGGAAG GAGTATTCAA GAACTGTGAT CATGCAGAGT AGTATCAGTG ATGTGATTGA CCCTGTTGGG TGGCATGAGT
GGAGTGGCAA CTTTGCATTG AGCACTTTGG TCTATAGGGA ATATCAGAAC ACTGGGCCTG GTGCTGGAAC CTCCAATAGG
GTCTCTTGGA AAGGGTTCGA AGTTATAACT GATGCTGCTG AAGCCCGGGC TTTTACCCCT GGAAGCTTCA TTGGAGGCTC
TAGCTGGTTG GACTCTACGG GCTTTCCTTT CTCTCTTGGC TTGTAA

>Vigan.09G186600.01
MTNPKLPYTG ISDSGNHTSL SKKSFYKKKL FLTLFATLLV AASVAAIVAG VKNKNQKSDG SSSSSLSLSH QSHAILKSAC
SSTFYPELCF SAVASEPNVT HKVTSHRDVI KLSLDITTRA VEHNYFTVKK LTTKHGLTKR EKTALHDCLE TIDETLDELK
EAKRDLELYP NKKTLYQHAD DLKTLISAAI TNQVTCLDGF SHEDADKRIR KALEKGQVHV EHMCSNALAM TKNMTDTDIA
NFEQSTKLRD NNVGQNRKLL AEESNAGVVW PEWISATDRR LLQATTVKAD VVVAADGSGN FKTVSEAVDA APLKSSKRFV
IRIKAGVYKE NVEVPKKKTN IMFLGDGRTT TIITASRNVV DGSTTFHSAT VAVVGENFLA RDITFQNTAG PSKHQAVALR
VGGDLSAFYN CDILAYQDTL YVHNNRQFFV KCLIAGTVDF IFGNSAVVFQ DCDIHARRPD SGQKNMVTAQ GRVDPNQNTG
IVIQKCRIGA TSDLESVKKS FKTYLGRPWK EYSRTVIMQS SISDVIDPVG WHEWSGNFAL STLVYREYQN TGPGAGTSNR
VSWKGFEVIT DAAEARAFTP GSFIGGSSWL DSTGFPFSLG L*