GBrowse Details

Vigan.09G148800.01

Basic Information:
Name: Vigan.09G148800.01
Multiple alignment
Variant Information
Position: Chr09:28369087..28371552 (+ strand)
Length: 2466
Functional Information:
Description: Similar to Uncharacterized protein. [I1KIE7, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.78,5.87,3.84,10.55,4.60,3.83,31.93,4.82
Automatic updates:
Name: NM_001354728 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max short-chain dehydrogenase/reductase domain-containing protein (LOC111064653), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:28369087..28369177 (+ strand)
Length: 91
Type: five_prime_UTR
Position: Chr09:28369178..28369203 (+ strand)
Length: 26
Type: CDS
Position: Chr09:28369329..28369578 (+ strand)
Length: 250
Type: CDS
Position: Chr09:28370145..28370360 (+ strand)
Length: 216
Type: CDS
Position: Chr09:28370470..28370847 (+ strand)
Length: 378
Type: CDS
Position: Chr09:28370848..28371552 (+ strand)
Length: 705
Type: three_prime_UTR

>Vigan.09G148800.01 class=Sequence position=Chr09:28369087..28371552 (+ strand)
TGAGCTTACA TTATTTTATA GCCGTCTTTC ACTTTAAATA TTATCCTCTG CTTTCTGCTT TCTGCATCCA ATTCATTCAG
ATTCAACAAC TATGGGTATG GCAGATGCAA AAGAAAGGTA GCACTTTCTC TCTTCATGAA GTTGTGGATC CAACATGATA
TTCACATACC CTTTTGCTTC TAGTGTATGT AATTTGTATT TGGTGATTAA CATTTTAATG ATGTTTGTGT TTGCTTTTTC
AGATATGCTG TTGTGACAGG TGCAAACAAA GGGATAGGAT TGGAGACTGT GAAAGGGTTG GCCTCAAATG GAATCAAGGT
GGTGCTGACA GCCAGGGATG TGAAGAGGGG TTATCAAGCT GTTGAGGAAT TGCAGAAAGA ATTTGGCTTT TCTGGCCTTG
TGCTGTTTCA CCAGCTTGAT GTCACTGACT CTGCTAGTAT TGCATCTTTG GTTGAGTTTG TGAAGAACCA GTTTGGGAGA
CTTGATATAT TGGTAAGATT TTGATGTTAT GTTTAATGTT CTGAGCTATG CTTTTCCTTT TTTTTAACTA CTTTCTCCTT
TTCTGTGTCT AAAGGGAGTT TGTCAAGTTT TTTATATATA TGACAGTGAA TGGAATCTTG CATTGTGCCC CCACTCAGTT
GTTTCAATTG AATAATATGA TTCACAAATA CCATTTTGTC TGGTGATTCT GATGCAGAAC ACTAGTGATG AATAGTGTTT
ATCTAATATT TTTCATTTTA ACTCTTCTTA TGCATCTTCT TAGTGGTCCA ATTCTCCATC TTTTCCCCTA ATAAGTTTTC
CTATAATGAT GCTTACAATT CTACATGCTT GCAACATATT TTGATTTTGA TCTGCAAAAT CAATGAGTTT GTATCGGTGA
AAAGTGCCTG ATCTGGCTGA CACCAACCTG ATTCAGAGTT TATTAGACAT AGTATAAAAG ACTTTCCATG ATTTATACTG
ATGATGTTGA AAAATCTGAA TGACTTCACC ATAGCAATAA CTGTGTTTGT TTCTCTTTAG ATGAAGGATC ACTAAACAAT
TTTGAAATTC ATGTGCAGGT GAACAATGCA GGAATCAATG GATTCAACAC AGATGGCATG GTGCCATCAA AAATTAACTG
GAAGGAGCTA CCTCAAACTT GTGAGATGGC TAAGAAATGC CTAAGAACAA ACTACTATGG TGCTAAGGAA ACAACTGAGG
CATTTCTTCC CCTTCTTCAG TTGTCCAATT TACCCATGAT TGTTAATGTT TCATCTGAAG CAGGACTTTT AAAGGTACAA
AAACAACATA ATTTTGAATT ACTTTAAACA AGAGTTTTAC ACAGTACACT AATCAGAAAT CATACTAATT TGAAATCTGA
TGTTATAATA TGGTGTGTTT CAGTACATAT CAAATGGATG GGCAAGGAGG GTGCTTGATG ACACAGAAAA TCTGACTGAA
GAGCTAATAG ATGAGGTGCT GAGGGAGTAC ATGAAAGACT TGAAAGCAGG TTGTCTAGAA AACAAAGGGT GGCCAACCTA
CTTGTCTGCA TATATGGTCT CAAAAGCAGC CATGAATTCA TACACAAGGC TTTTAGCCTA TAGATACCCA AAACTGTGCA
TCAATTGTGT CTGTCCTGGT TTTGTTAAGA CAGACATTAA CAAAAACACT GGCATCTTAT CTGTTGAAAA TGGTGCTGCT
AGTGTTGTCA GATTAGCACT CTTGCCTAAT GGTTCCCCTT CTGGCCACTT CTTTACTCGA CAAGAAGTGT CAAGCTTTTG
AAAGCATTTT AAGGTCATGA TTGGATAATT TTTTTCATAA ATACTTGTAA AGAAAAAGTG AAAAAAGTTT CTGCATAAGT
AAAATCAACT TATACATGAG TTGATTTGAA GTAACTGCTA TATCAGTTTG TGAAAGAAAC TTAATTGTTT TTTTTTTCTT
TTGCAAAAAG TATTGGTAAA GAATTTATCC AAACAGGACC TGTTGCTTAC AAATTGCAGA TGGAATGAGA AAAAAATTGA
TAGGAGGTGT TATGTGGCTT GGATTGGATG AAAGTTTTAC CCTTCTAGTC TTCTTTGTGA CATAATATCA TGTGGGGAAA
TGCATCTGAG TTACTTGGTT CTTTTATCTT CTCACATTGT TGGTTCTTCA AATGGTCAAA GTTCAAGTTG CAGTGATTTT
TGGACTGTAT CATATGGCAC GACATGAAAC TTTCGGCAGA GGAAATTATC AACAATGGTC ATTATTATGT CTGTCCCTGT
CATCTTAGGT GTGAATCACA GTGCTCTTGG ACTTCAAACT TTCAACACAC GTGCAATGCT AAAGCACTGC TGATAGTAAA
GCAGCAATAA TGGATGTCGA GATTTCAGAA AAAGACGACT ATTGTAACAC GACATACCAT CATTCGTGTC CATCTTCTGT
AACATAATAT TATTATCTGT AATATATCAG TGGATCTTAT CAAACGTTAA TCCATGCTCA AATCAG

>Vigan.09G148800.01
TGAGCTTACA TTATTTTATA GCCGTCTTTC ACTTTAAATA TTATCCTCTG CTTTCTGCTT TCTGCATCCA ATTCATTCAG
ATTCAACAAC TATGGGTATG GCAGATGCAA AAGAAAGATA TGCTGTTGTG ACAGGTGCAA ACAAAGGGAT AGGATTGGAG
ACTGTGAAAG GGTTGGCCTC AAATGGAATC AAGGTGGTGC TGACAGCCAG GGATGTGAAG AGGGGTTATC AAGCTGTTGA
GGAATTGCAG AAAGAATTTG GCTTTTCTGG CCTTGTGCTG TTTCACCAGC TTGATGTCAC TGACTCTGCT AGTATTGCAT
CTTTGGTTGA GTTTGTGAAG AACCAGTTTG GGAGACTTGA TATATTGGTG AACAATGCAG GAATCAATGG ATTCAACACA
GATGGCATGG TGCCATCAAA AATTAACTGG AAGGAGCTAC CTCAAACTTG TGAGATGGCT AAGAAATGCC TAAGAACAAA
CTACTATGGT GCTAAGGAAA CAACTGAGGC ATTTCTTCCC CTTCTTCAGT TGTCCAATTT ACCCATGATT GTTAATGTTT
CATCTGAAGC AGGACTTTTA AAGTACATAT CAAATGGATG GGCAAGGAGG GTGCTTGATG ACACAGAAAA TCTGACTGAA
GAGCTAATAG ATGAGGTGCT GAGGGAGTAC ATGAAAGACT TGAAAGCAGG TTGTCTAGAA AACAAAGGGT GGCCAACCTA
CTTGTCTGCA TATATGGTCT CAAAAGCAGC CATGAATTCA TACACAAGGC TTTTAGCCTA TAGATACCCA AAACTGTGCA
TCAATTGTGT CTGTCCTGGT TTTGTTAAGA CAGACATTAA CAAAAACACT GGCATCTTAT CTGTTGAAAA TGGTGCTGCT
AGTGTTGTCA GATTAGCACT CTTGCCTAAT GGTTCCCCTT CTGGCCACTT CTTTACTCGA CAAGAAGTGT CAAGCTTTTG
AAAGCATTTT AAGGTCATGA TTGGATAATT TTTTTCATAA ATACTTGTAA AGAAAAAGTG AAAAAAGTTT CTGCATAAGT
AAAATCAACT TATACATGAG TTGATTTGAA GTAACTGCTA TATCAGTTTG TGAAAGAAAC TTAATTGTTT TTTTTTTCTT
TTGCAAAAAG TATTGGTAAA GAATTTATCC AAACAGGACC TGTTGCTTAC AAATTGCAGA TGGAATGAGA AAAAAATTGA
TAGGAGGTGT TATGTGGCTT GGATTGGATG AAAGTTTTAC CCTTCTAGTC TTCTTTGTGA CATAATATCA TGTGGGGAAA
TGCATCTGAG TTACTTGGTT CTTTTATCTT CTCACATTGT TGGTTCTTCA AATGGTCAAA GTTCAAGTTG CAGTGATTTT
TGGACTGTAT CATATGGCAC GACATGAAAC TTTCGGCAGA GGAAATTATC AACAATGGTC ATTATTATGT CTGTCCCTGT
CATCTTAGGT GTGAATCACA GTGCTCTTGG ACTTCAAACT TTCAACACAC GTGCAATGCT AAAGCACTGC TGATAGTAAA
GCAGCAATAA TGGATGTCGA GATTTCAGAA AAAGACGACT ATTGTAACAC GACATACCAT CATTCGTGTC CATCTTCTGT
AACATAATAT TATTATCTGT AATATATCAG TGGATCTTAT CAAACGTTAA TCCATGCTCA AATCAG

>Vigan.09G148800.01
ATGGGTATGG CAGATGCAAA AGAAAGATAT GCTGTTGTGA CAGGTGCAAA CAAAGGGATA GGATTGGAGA CTGTGAAAGG
GTTGGCCTCA AATGGAATCA AGGTGGTGCT GACAGCCAGG GATGTGAAGA GGGGTTATCA AGCTGTTGAG GAATTGCAGA
AAGAATTTGG CTTTTCTGGC CTTGTGCTGT TTCACCAGCT TGATGTCACT GACTCTGCTA GTATTGCATC TTTGGTTGAG
TTTGTGAAGA ACCAGTTTGG GAGACTTGAT ATATTGGTGA ACAATGCAGG AATCAATGGA TTCAACACAG ATGGCATGGT
GCCATCAAAA ATTAACTGGA AGGAGCTACC TCAAACTTGT GAGATGGCTA AGAAATGCCT AAGAACAAAC TACTATGGTG
CTAAGGAAAC AACTGAGGCA TTTCTTCCCC TTCTTCAGTT GTCCAATTTA CCCATGATTG TTAATGTTTC ATCTGAAGCA
GGACTTTTAA AGTACATATC AAATGGATGG GCAAGGAGGG TGCTTGATGA CACAGAAAAT CTGACTGAAG AGCTAATAGA
TGAGGTGCTG AGGGAGTACA TGAAAGACTT GAAAGCAGGT TGTCTAGAAA ACAAAGGGTG GCCAACCTAC TTGTCTGCAT
ATATGGTCTC AAAAGCAGCC ATGAATTCAT ACACAAGGCT TTTAGCCTAT AGATACCCAA AACTGTGCAT CAATTGTGTC
TGTCCTGGTT TTGTTAAGAC AGACATTAAC AAAAACACTG GCATCTTATC TGTTGAAAAT GGTGCTGCTA GTGTTGTCAG
ATTAGCACTC TTGCCTAATG GTTCCCCTTC TGGCCACTTC TTTACTCGAC AAGAAGTGTC AAGCTTTTGA 

>Vigan.09G148800.01
MGMADAKERY AVVTGANKGI GLETVKGLAS NGIKVVLTAR DVKRGYQAVE ELQKEFGFSG LVLFHQLDVT DSASIASLVE
FVKNQFGRLD ILVNNAGING FNTDGMVPSK INWKELPQTC EMAKKCLRTN YYGAKETTEA FLPLLQLSNL PMIVNVSSEA
GLLKYISNGW ARRVLDDTEN LTEELIDEVL REYMKDLKAG CLENKGWPTY LSAYMVSKAA MNSYTRLLAY RYPKLCINCV
CPGFVKTDIN KNTGILSVEN GAASVVRLAL LPNGSPSGHF FTRQEVSSF*