GBrowse Details

Vigan.09G089200.01

Basic Information:
Name: Vigan.09G089200.01
Multiple alignment
Variant Information
Position: Chr09:12703307..12707647 (+ strand)
Length: 4341
Functional Information:
Description: Similar to Uncharacterized protein. [I1J9N4, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:46.91,30.18,24.94,36.55,38.28,26.36,57.91,26.43
Arabidopsis thaliana homolog: AT2G44610.1
Automatic updates:
Name: BT096359 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-9P13 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:12703307..12703486 (+ strand)
Length: 180
Type: five_prime_UTR
Position: Chr09:12703487..12703603 (+ strand)
Length: 117
Type: CDS
Position: Chr09:12704500..12704570 (+ strand)
Length: 71
Type: CDS
Position: Chr09:12705368..12705456 (+ strand)
Length: 89
Type: CDS
Position: Chr09:12705847..12705958 (+ strand)
Length: 112
Type: CDS
Position: Chr09:12706817..12706907 (+ strand)
Length: 91
Type: CDS
Position: Chr09:12707209..12707352 (+ strand)
Length: 144
Type: CDS
Position: Chr09:12707353..12707647 (+ strand)
Length: 295
Type: three_prime_UTR

>Vigan.09G089200.01 class=Sequence position=Chr09:12703307..12707647 (+ strand)
TTTTGGGGTT TCGTCCTCAT CTCATGCGAT TCAATTAAAT AACATTTTCA CATAGCCAAC TCTCTCCGCG TCTTATTGTC
TGTTCCTTTT CTTCAGAGTC CGAGATCAAC CCCGACAAAC CACTGAAGTT TTTCTCTGCT TCTTCCGATT CATCTTTCTG
CTTTCATTTT CGATTTTGAA ATGGCGCCAG TTTCAGCTCT AGCTAAGTAC AAGTTGGTGT TCTTGGGTGA TCAATCGGTG
GGCAAAACCA GCATCATCAC TCGCTTCATG TACGATAAAT TCGATAACAC CTACCAGGTT TGTCTAAACC CTCAGATCCA
ATCCAAAACC GCATAAGAAA CTCCTTACTT AGTTCGTCAA GGCTAAAACC ACTTCTAAAC CCTCACTATT TTCTGTTTCA
TTTGATTTGT TGTTTTTTGT GTATACTAGT AAAACTAATC CTAGGCTCTC AACTTGGTTC GATTCAGATT TATCATTGTT
CTTGAATTTG ATTTGCCTTT CAGTTTAATT TATCCTGCGA ACTGTTGTGC TGAACGATTA TTATAATCTT ATTACTATTA
TTTTATTTAA AAGAACAAGG AAGAATTCAA ATAAATGATG TAGATTTGAT TATAAATCCT ACTATTGATT CAGCTTGTGA
ACTTTGACTT TTCGAATGTT CCCCTTTGCC TTTTAGATTT TAGACTACTT TTTTTGATAA ATACTATATT GAACATGCCG
ATAAATTATT CAAACCTAAT GAGAATAAAC AAACAGCCTA TTTACTAATA ATATCTCTGA ATACAAATCT AAAAGAACTT
TTGAAATCTC TTCTATGGGA AAAGGCTTTA TATTTTCCAA TAGAGGAACT ACTAAAAACG TTACCAACTT GTATCCAAAT
AGGCCTTGAC TCACTAACTA TGGCTGCTAA GTGCTTCATT TGATAATTAT GGCTATATTA TGGAATTGTT GTGCCAATTT
TTTTTTTTTT TTGCTTGAGA ATCACATTTT CCATCTCATA CCGTGTAAGC ATAGTTGTGT TTCAACTATA TGCTTGACTG
CTTATAAGTT ATATTCCGTT CACTTCAGGC TTAAGTTTTT TTCTAAGCAT AATAGACATG CTGCTTCAAT CATTGTGTGT
ACTTTCATTT CTTAGCTTCA TCATACTATC GTACTTTTGT TGAATTTTGT TTTGACTTTT TTCCTTCGTG CAGGCTACAA
TTGGTATTGA TTTCCTATCA AAAACTATGT ATCTTGAAGA TCGAACAATT CGATTGCAGT TGTGGTAAGA TTTGGAGTAG
CATCTCATAT ATAAAATGGT CAAGAAATGA AAGGGTGTTT AGGAAAGGAA AGGATTGAAA GAGGTAGGAT AGCATGGGTG
GGATAGTTTC CTACTATTAT ATTCTGAAGA CAGGCGATGA TAGGATGAGA GAAAGTATGT AATGACATTT TAATTGTATT
TCGCCTGAAT GTGAAGGCTC ACTTTTCTGT AGGACTGAAT GCTTGCATTT TGTTTCTGCT GATGTGAACT AAGTTTAATT
TTGTTCAATC CCAAATAGGA GAAAAAGGAT TTTGTTTCAA CTTTTTGGGT ATATAGGGAG AGACTAAGTA GTCACCGCTC
AGTTTTTTCT TTCCCTGGAA TTTGTAAATG ATTAACATGA CCATGGTACT GCAGGGTTTA CTTGCCTTTT TAGATTACTG
AATTTATACA GGTGAAAATC TTGATATTTT GACTTCAATG ATTCACATCA TTTGCTGAGT TTTAAAATTC ATATCTTATA
TCCTTTTTGC ATTTTACACT TTTTTTGTTA TTAACCATTG TTGTTTTTAA GCTTTTACTA TATTTATATT CAAAGAAATA
AATAATTTTT TAGCTGGACA AATTCTATTC TAAACTTTAA ATTTCTATAC ATACTTCATT CTTCTAGCAT TTGTACTATT
TTAGTGTTTC CTTAGTATTC AAGTTTTTTC TAGGTTGAAA ATATATTTGT AATGGTATTG GATGTGCAGG GGTTGGTTTT
AGTTTATGTG AATTTGTTTT TGCTGTATTC CAAATGTTCA TCTTTTCACG TGTTCTGGCA GGGATACAGC TGGCCAGGAA
AGGTTTAGAA GTCTTATTCC AAGCTACATT AGGGACTCAT CCGTAGCTGT CATTGTATAT GATGTTGCAA GTATGTTATC
TGGGATTTCC TTTCTTTTCA TCTTTTACTT TTGCCACTAT TTTTCCATCT TACACAGCTT TTACCTCTTA AAAATATTTG
GTATCGTTGA AGTTGTTTTT TATGGTTAAC ATACTGAAGC ACTTTGACTT TGATTGTAAA CTTATGAGCT TCACATTATT
TTAAATACCA TCTGCAGTGA TAGCAGGATG CTATGCCTTT CTGTAGGAAC TACGAAAGTA GCATAATGAT ATAGTGATTA
TACACAAGTT CCATAACCTT GTGTAGTAAA CCATGGCATC CAAATCTCTT TACATGATTT GGACAAGGGG TTGACTTAAA
TTTCTGTCAA GAGCTTTGTC TGGAACATTT TCTAATAAAT TTGATATTTT TGCTACACAG GCCGACAGAG TTTCCTAAAT
ACAGCTAAGT GGATTGAAGA GGTGCGAACA GAGAGAGGCA GTGATGTCAT TATTGTTCTT GTTGGGAACA AAACTGATCT
TGTTGAAAAA AGGTCATGAG TAAAGAAGAG AAGAATGTTG GAATGAGTCT AGGGATAGGA ACTATTGACA AATCACATAT
ATTGACTTAA ACCAACCACT TGTTTACCAA CTTTTCTTAG ACTAAAAATC TTTTTACCAA GAATTATTTA AAAGTAAATA
TGTAATCAGG ATCTCTCTAG ATATTATCAA ACTGGTTACA GTGGTGAATT TTTGTCTCGA ATCTTTCCAT TTATCCTTTC
TTTGCATGCA TTATAATATC TTATTACCCA TCTGTTTCCA TATTCTCTTT TCATCCAAAG TATTATATGT CACCCATTTA
ATATTCAGCT TAAGTGTTTA ACACTGCAGA CATAAATTTA TAGGAAGGAA ATAAATTATT GATATGGAAC AGTAAGATGA
CAGAGTGTGG GAATTAGATG TAGGAATGGT TGCAATTAGT CCTTTTGCTT TCTCTAGTAG TATGTTGGAA TTCTTACAAC
TTATATCCTA GTGTGGACTC AACCCATCTT TTGCTGTGTA TGCTATTTAT TTGAGTCTTG CTATGCTCTT GGTTAAACAC
TTGTATCAGT TGTTGGCCTA TATTATAGAT CACACCAAGG AATTAAGGTG TTGCTTATCA GTTAAAAGTC TTATGCATTC
AAGTTAACCT ACCATAGAAG ATCACTCTTG GCATTAGTGA TCAGCTTTGT CCAGGTAGTT TTGGATGGAC AGAAGAGTTC
AATTTTCCAG ACTTTAGCTG GCATTAGTTA AGTTGACCTT AAAGATGTTT CATGGGAATT GCATGTTCTT GCTGTACAGT
TCTGGATACT GACTAGTGTT AGAATCTGAA ATTTATTTTG TTTTGTTTTA CCAATTTTGT GACTCTGCAG ACAAGTCTCT
ATAGAAGAAG GGGAAGCAAA AGCTCGTGAG CTCAATGTCA TGTTCATTGA AACTAGCGCA AAGGCTGGGT TTAATATAAA
AGTAACTTAT CTAACACCCA TCCTTTTTCT TTTGCATACA TTATTATTGA ATGCTTTGTT TCTAGTCAGA GTGAAATGAA
TCATGCTATA ATGTGATGAT TGGACTCTAA ATGCTTGTGT TTGAATACTG CGTGTGTGAG ATCTACTTTA ACTTAATTAG
ATATCACGAA CTTTTATTTC TTGTTCTTTA ACTCTAAATC TTAATCATTT GCTTTAAGTT TCTTGCATTT GAAAATTGTT
TTAAATTGTG GTTTTTTCTG TTTCTAACTA ACCATATATT ATGTATTATG GGACATCTAC AGGCCCTCTT TCGAAAAATT
GCTGCAGCAT TACCCGGAAT GGAAACACTG TCCTCTGCAA AACAAGAAGA CATGGTTGAT GTAAACTTGA AGTCTACAAC
TGGCAACGCT CAAACTCAAC CTCAGTCAAG TGGATGCGCA TGTTAATTGT AGTTTGTCAT GTGCTGTCCA CCTTTTGTTG
TGTTTTTGGT TTTATGCAGG TTTTTTTCTG TAGTTTTCTA CAGCATTATA TGAAAAAATA TGAAAGAATA TATATAAGCA
GTGAAGGGTA GGGGTTGGAT ATAAGTTCTG TCCAAAAGAA TTATTGTTTG TTAATTAGAT ATGTTTGCCA TAACGTATTA
TAGGTAACCT CCCCAACCCA AAATTGGATT TCGTTCAGTG TACTTTATAA ATTTAACTTT TTATTTGGTT TGTCTTGAAA
AAAATGTCAT TTTATTTTAT T

>Vigan.09G089200.01
TTTTGGGGTT TCGTCCTCAT CTCATGCGAT TCAATTAAAT AACATTTTCA CATAGCCAAC TCTCTCCGCG TCTTATTGTC
TGTTCCTTTT CTTCAGAGTC CGAGATCAAC CCCGACAAAC CACTGAAGTT TTTCTCTGCT TCTTCCGATT CATCTTTCTG
CTTTCATTTT CGATTTTGAA ATGGCGCCAG TTTCAGCTCT AGCTAAGTAC AAGTTGGTGT TCTTGGGTGA TCAATCGGTG
GGCAAAACCA GCATCATCAC TCGCTTCATG TACGATAAAT TCGATAACAC CTACCAGGCT ACAATTGGTA TTGATTTCCT
ATCAAAAACT ATGTATCTTG AAGATCGAAC AATTCGATTG CAGTTGTGGG ATACAGCTGG CCAGGAAAGG TTTAGAAGTC
TTATTCCAAG CTACATTAGG GACTCATCCG TAGCTGTCAT TGTATATGAT GTTGCAAGCC GACAGAGTTT CCTAAATACA
GCTAAGTGGA TTGAAGAGGT GCGAACAGAG AGAGGCAGTG ATGTCATTAT TGTTCTTGTT GGGAACAAAA CTGATCTTGT
TGAAAAAAGA CAAGTCTCTA TAGAAGAAGG GGAAGCAAAA GCTCGTGAGC TCAATGTCAT GTTCATTGAA ACTAGCGCAA
AGGCTGGGTT TAATATAAAA GCCCTCTTTC GAAAAATTGC TGCAGCATTA CCCGGAATGG AAACACTGTC CTCTGCAAAA
CAAGAAGACA TGGTTGATGT AAACTTGAAG TCTACAACTG GCAACGCTCA AACTCAACCT CAGTCAAGTG GATGCGCATG
TTAATTGTAG TTTGTCATGT GCTGTCCACC TTTTGTTGTG TTTTTGGTTT TATGCAGGTT TTTTTCTGTA GTTTTCTACA
GCATTATATG AAAAAATATG AAAGAATATA TATAAGCAGT GAAGGGTAGG GGTTGGATAT AAGTTCTGTC CAAAAGAATT
ATTGTTTGTT AATTAGATAT GTTTGCCATA ACGTATTATA GGTAACCTCC CCAACCCAAA ATTGGATTTC GTTCAGTGTA
CTTTATAAAT TTAACTTTTT ATTTGGTTTG TCTTGAAAAA AATGTCATTT TATTTTATT

>Vigan.09G089200.01
ATGGCGCCAG TTTCAGCTCT AGCTAAGTAC AAGTTGGTGT TCTTGGGTGA TCAATCGGTG GGCAAAACCA GCATCATCAC
TCGCTTCATG TACGATAAAT TCGATAACAC CTACCAGGCT ACAATTGGTA TTGATTTCCT ATCAAAAACT ATGTATCTTG
AAGATCGAAC AATTCGATTG CAGTTGTGGG ATACAGCTGG CCAGGAAAGG TTTAGAAGTC TTATTCCAAG CTACATTAGG
GACTCATCCG TAGCTGTCAT TGTATATGAT GTTGCAAGCC GACAGAGTTT CCTAAATACA GCTAAGTGGA TTGAAGAGGT
GCGAACAGAG AGAGGCAGTG ATGTCATTAT TGTTCTTGTT GGGAACAAAA CTGATCTTGT TGAAAAAAGA CAAGTCTCTA
TAGAAGAAGG GGAAGCAAAA GCTCGTGAGC TCAATGTCAT GTTCATTGAA ACTAGCGCAA AGGCTGGGTT TAATATAAAA
GCCCTCTTTC GAAAAATTGC TGCAGCATTA CCCGGAATGG AAACACTGTC CTCTGCAAAA CAAGAAGACA TGGTTGATGT
AAACTTGAAG TCTACAACTG GCAACGCTCA AACTCAACCT CAGTCAAGTG GATGCGCATG TTAA

>Vigan.09G089200.01
MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTIRL QLWDTAGQER FRSLIPSYIR
DSSVAVIVYD VASRQSFLNT AKWIEEVRTE RGSDVIIVLV GNKTDLVEKR QVSIEEGEAK ARELNVMFIE TSAKAGFNIK
ALFRKIAAAL PGMETLSSAK QEDMVDVNLK STTGNAQTQP QSSGCAC*