GBrowse Details

Vigan.09G082600.01

Basic Information:
Name: Vigan.09G082600.01
Multiple alignment
Variant Information
Position: Chr09:11511639..11515094 (- strand)
Length: 3456
Functional Information:
Description: Similar to Uncharacterized protein. [I1N2Y0, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: histone binding (GO:0042393)
InterPro: Zinc finger, PHD-type (IPR001965)
Zinc finger, FYVE/PHD-type (IPR011011)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, PHD-type, conserved site (IPR019786)
Zinc finger, PHD-finger (IPR019787)
Alfin (IPR021998)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:71.32,76.03,71.77,63.46,68.94,88.05,88.76,43.41
Automatic updates:
Name: NM_001252902 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PHD finger protein ALFIN-LIKE 1-like (LOC100793126), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255606 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PHD finger protein ALFIN-LIKE 1-like (LOC100779170), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:11511639..11512052 (- strand)
Length: 414
Type: three_prime_UTR
Position: Chr09:11512053..11512304 (- strand)
Length: 252
Type: CDS
Position: Chr09:11512994..11513114 (- strand)
Length: 121
Type: CDS
Position: Chr09:11513905..11514127 (- strand)
Length: 223
Type: CDS
Position: Chr09:11514687..11514719 (- strand)
Length: 33
Type: CDS
Position: Chr09:11514808..11514898 (- strand)
Length: 91
Type: CDS
Position: Chr09:11514899..11515094 (- strand)
Length: 196
Type: five_prime_UTR

>Vigan.09G082600.01 class=Sequence position=Chr09:11511639..11515094 (- strand)
CGCAGACATA CACTCTTCCA CTATGTCTGT TGTTCTATTT ATTATTTTCC TCTCCAAATT CCAGCCTCTT TCTCTCAGTC
CCTAACACCA TCACATGCAC CCGCGATCCC TACGATCCCT TCCCATGGTC TCGACCCTGC ACCCACGTCG CGCCTTCTAG
AACCTTCCCT TCAGATCTCA ATTGCCCCTT CCTTTCATGC AAATGGCTTC CACTCCCCGC ACCGTCGAAG AGATCTTCAA
GGATTACACC GCCCGAAGAA CCGCCATCGT TCGCGCTCTC TCTCAAGGTC CTTCCTCTCT CTCTCTCTAA CTCCCCTTTT
TCCCCTTCCA ATTTCAGTCA TCGCCCTAAC ACTTTAGGGC TTTTTCTTCT CTCAGATGTC GATGAATTCT ACGGACTCTG
TGATCCAGGT ACAGCGAACC CGCGGATCTG AATTCTGTTT GCTTTACGTT CCAAGACTGT TTTCTTTTAC TGATTTTCCA
ATTGTGTTTT TTTTGTTTCT GTGTAAATTG AGCAAGTTGA CTTTTTTTCT TTTATCAGAA TTTGAGCGAA AAAACATATA
ATAAAAGAAA GTCAAAGTTT GACATGTCCC ATCCGACATG TTTTATAACA AACGAATAAA TAAATATATA TGTATTATTT
GTTTATAATA TATGTAAATT AGTTAACAAA CTAATTATCA GTTAGTGGTT TTGGATTCTT AGTTTGTGTA TGTGTGACAC
TTAAGCAGTT TATGTGTTGT TACTAATCTG GTAAATTTTG AAAAGGTTAA GGTTGACTTG GGTCGGGTCT GTTCTTCTGT
GACATGTTGG GTTTTGGATT TTGATTTGGG CGTAAGGTTT GAGTTTGATA TGCGCTTAAC TAACTGGTTG AGTTAGATGT
GGTAGTTGTT ATGGTTTTCT GTGATGATTA CTGTGAATTT GTGTTGTTTC ATTGAGTTCG AGGTTTTACT GGTTTGCTTG
TTTTAAGATA AGGAGAACCT GTGCCTCTAT GGACATCCGA ATGAGACTTG GGAGGTGACT TTGCCTGCGG AGGAAGTTCC
GCCGGAGCTA CCGGAGCCTG CTCTTGGAAT CAATTTTGCA AGGGATGGCA TGAACCGCAG GGACTGGCTT TCTCTGGTTG
CCGTGCACAG TGATTCGTGG CTGCTTTCTG TGGCTTTTTA TCTTGGAGCT CGTCTTAACC GCAATGAAAG GTACAGTCTA
TCTTTGGTTT GGGTGTGAGC ATGTGGTGAG GATTTAAGTT GGTTTTTGCT CGGTGTGTGC AATGCTGATG CTTAATTGCT
GTGTGTAATG TTGAATACTG GGGTCTTGTT ATTGTAATGG GTTCTGAAAT GCCTCAGGAT CGTGATGGGT GAATGTTGTT
GAAGAAATAA TGGTTTTTAA ATTAACTGGA AATGAATGTT GTGATTCTGG ATTATTTTAT GCAAGCAGTC CTTTTATTAG
AGGTCTCTTA AGGCAATCTT ATCTTCTAGT TTTCCTTCTC ATCCAAAAGA GTAACAATTC AGCAAACTAA TCATGAATTT
GAGGTTGGTG GGATGGATTA CCATCGTGCG TCTGTGAATT CTTATTATTT AATTTAAGTC CTCATCTTTT GGCAATCATG
TTTATCTTTC CCACTTACAA TTATGAGCTC CAAAGGGGAT TATATTTTAA GCTGTAATAA TATGCTTTAT ATTTGAACTC
AACAATTATG TCAAAGCAAT TCATAAGTGC CTTTATCTTT CTGCAATCGT GTTTATCTTT CCCTCCTATA TTCAATTTAG
AGCTGCAAAG GGCATTATAT GTCCCAAAGA TACTTAAGGA AAATATAATA AACTGATTTT AATTTATTAT TTGAACGGGG
GAATATGTAT ATGCTGTTGC TTTGGTTCTT GGAAGTTTTT CCTTAGTAGA ATTCATGTTC TCAGTTTCCA CGACATCTGC
TCTGTATCGA GCCTATAACC CCTACTTTCT ATTGATGGTT CCATAAATTC CTTATGGCAG GAAACGTTTG TTTGGCTTGA
TAAATGATCT TCCTACTGTT TTTGAAGTTG TGACTGAGAG GAAGCCGGTA AAGGACAAGC CCACAGCAGA CAGTGGAAGC
AAATCTAGGA GCAGCACCAA GGTTAGTGTT GTTGTAAGTG TATGCATTTT ATTTATTTAT TTATTTTGTG GTCGGATCAT
CTGAATTTAG TTGATTAGCA CTCTGTCATG GTTAGGTTAT ACTCACGCAT TATAAAAGTT TGTAAGGAAA GTAAATCAAT
CAATGTCATT ATATCTTCTC AAGTTATTAT GGTACTAAAA ATTAAGCACA AATTTAACAC TTTATTGTAC ATAATCATCG
ACTTGTTTAT TAATTTTTGT ACAGTCAAAA ACTAAAGGGG CCTTTAAAGA TTCTGGATCT TAATCTTTTT GTGGAACTAA
GAACAGAATC TGTCACACTG ATGCAGCGAC AATTATATTT TCCTCTTTGC ATTATGATAA TAAAAATTAC TGTGTAGGTG
AATAAATGGA CTGTATTTTA GAAACCCTTT GATCATGAAA TCTGTTTCAT GTTGCAAATA CTTTTAGGAA TAAATGGAAT
GTATTTTAGA AACTCTTTGA TCATGAGGTG AATAAATGGA CTGTATTTTA GAAACCCTTT GATCATGAAA TCTGTTTCAT
GTTGCAAATA CTTTTAGGAA TAAATGGAAT GTATTTTAGA AACTCTTTGA TCATGAAATC TGTTTCAGGT TCCAAGTACT
TCTAAGACAT TGAATTAAAG GTTGCTAAAC CTTGCTGCTA TATGATGCTT GCTTGTTCAT TTATCTGCAG AGATCAAGTG
ATGGGCAAGT TAAAAGCAAC CCGAAGTTTG CAGATGAAGG ATATGAAGAG GAGGATGACG AGCATAGTGA AACCCTGTGT
GGGAGCTGTG GCGGAAATTA CAATGCAGAC GAATTTTGGA TTGGTTGTGA CATATGTGAG AGGTGGTTCC ATGGGAAATG
TGTGAAGATT ACTCCTGCAA AAGCTGAGAG CATAAAGCAA TACAAATGTC CATCATGCAG CTTGAGGCGG GGCAGGCCCT
AAGCGAGGGC AATCTGAGAA CTGAATAATA CTGTTTCATG GCCGACAAGA TACTGTTATA TTGTTGCATC TCCTACAGAA
GTTTGTGTAA ACAGTATAGT ATCTATGTCT GATCATAATC TTTCAGATTA AGTTAATTTC TTCTACCCAG ATTAATCATC
AGTGTATGTT ATATAATTTA TAGAATAGGA TACCTTACAT TCTATTTTGT CGATTAATCT ATATTTTGCT TGAATTTACC
AGGTGTATGT ATGCTTATTT TATTTTGTAT CTGAATTCTG ACACAGAAGG TAGCTGGTAA AATACTGAGG TGTGACCCAC
CATTCCTGGA TTCTTCTAAT TCTATAACTA TTGTGTTACC GAATAGGTTA ATGAATGTCT TTTCTGTGTT ATTCTATTTT
TACATTACAT ACGTGG

>Vigan.09G082600.01
CGCAGACATA CACTCTTCCA CTATGTCTGT TGTTCTATTT ATTATTTTCC TCTCCAAATT CCAGCCTCTT TCTCTCAGTC
CCTAACACCA TCACATGCAC CCGCGATCCC TACGATCCCT TCCCATGGTC TCGACCCTGC ACCCACGTCG CGCCTTCTAG
AACCTTCCCT TCAGATCTCA ATTGCCCCTT CCTTTCATGC AAATGGCTTC CACTCCCCGC ACCGTCGAAG AGATCTTCAA
GGATTACACC GCCCGAAGAA CCGCCATCGT TCGCGCTCTC TCTCAAGATG TCGATGAATT CTACGGACTC TGTGATCCAG
ATAAGGAGAA CCTGTGCCTC TATGGACATC CGAATGAGAC TTGGGAGGTG ACTTTGCCTG CGGAGGAAGT TCCGCCGGAG
CTACCGGAGC CTGCTCTTGG AATCAATTTT GCAAGGGATG GCATGAACCG CAGGGACTGG CTTTCTCTGG TTGCCGTGCA
CAGTGATTCG TGGCTGCTTT CTGTGGCTTT TTATCTTGGA GCTCGTCTTA ACCGCAATGA AAGGAAACGT TTGTTTGGCT
TGATAAATGA TCTTCCTACT GTTTTTGAAG TTGTGACTGA GAGGAAGCCG GTAAAGGACA AGCCCACAGC AGACAGTGGA
AGCAAATCTA GGAGCAGCAC CAAGAGATCA AGTGATGGGC AAGTTAAAAG CAACCCGAAG TTTGCAGATG AAGGATATGA
AGAGGAGGAT GACGAGCATA GTGAAACCCT GTGTGGGAGC TGTGGCGGAA ATTACAATGC AGACGAATTT TGGATTGGTT
GTGACATATG TGAGAGGTGG TTCCATGGGA AATGTGTGAA GATTACTCCT GCAAAAGCTG AGAGCATAAA GCAATACAAA
TGTCCATCAT GCAGCTTGAG GCGGGGCAGG CCCTAAGCGA GGGCAATCTG AGAACTGAAT AATACTGTTT CATGGCCGAC
AAGATACTGT TATATTGTTG CATCTCCTAC AGAAGTTTGT GTAAACAGTA TAGTATCTAT GTCTGATCAT AATCTTTCAG
ATTAAGTTAA TTTCTTCTAC CCAGATTAAT CATCAGTGTA TGTTATATAA TTTATAGAAT AGGATACCTT ACATTCTATT
TTGTCGATTA ATCTATATTT TGCTTGAATT TACCAGGTGT ATGTATGCTT ATTTTATTTT GTATCTGAAT TCTGACACAG
AAGGTAGCTG GTAAAATACT GAGGTGTGAC CCACCATTCC TGGATTCTTC TAATTCTATA ACTATTGTGT TACCGAATAG
GTTAATGAAT GTCTTTTCTG TGTTATTCTA TTTTTACATT ACATACGTGG 

>Vigan.09G082600.01
ATGCAAATGG CTTCCACTCC CCGCACCGTC GAAGAGATCT TCAAGGATTA CACCGCCCGA AGAACCGCCA TCGTTCGCGC
TCTCTCTCAA GATGTCGATG AATTCTACGG ACTCTGTGAT CCAGATAAGG AGAACCTGTG CCTCTATGGA CATCCGAATG
AGACTTGGGA GGTGACTTTG CCTGCGGAGG AAGTTCCGCC GGAGCTACCG GAGCCTGCTC TTGGAATCAA TTTTGCAAGG
GATGGCATGA ACCGCAGGGA CTGGCTTTCT CTGGTTGCCG TGCACAGTGA TTCGTGGCTG CTTTCTGTGG CTTTTTATCT
TGGAGCTCGT CTTAACCGCA ATGAAAGGAA ACGTTTGTTT GGCTTGATAA ATGATCTTCC TACTGTTTTT GAAGTTGTGA
CTGAGAGGAA GCCGGTAAAG GACAAGCCCA CAGCAGACAG TGGAAGCAAA TCTAGGAGCA GCACCAAGAG ATCAAGTGAT
GGGCAAGTTA AAAGCAACCC GAAGTTTGCA GATGAAGGAT ATGAAGAGGA GGATGACGAG CATAGTGAAA CCCTGTGTGG
GAGCTGTGGC GGAAATTACA ATGCAGACGA ATTTTGGATT GGTTGTGACA TATGTGAGAG GTGGTTCCAT GGGAAATGTG
TGAAGATTAC TCCTGCAAAA GCTGAGAGCA TAAAGCAATA CAAATGTCCA TCATGCAGCT TGAGGCGGGG CAGGCCCTAA

>Vigan.09G082600.01
MQMASTPRTV EEIFKDYTAR RTAIVRALSQ DVDEFYGLCD PDKENLCLYG HPNETWEVTL PAEEVPPELP EPALGINFAR
DGMNRRDWLS LVAVHSDSWL LSVAFYLGAR LNRNERKRLF GLINDLPTVF EVVTERKPVK DKPTADSGSK SRSSTKRSSD
GQVKSNPKFA DEGYEEEDDE HSETLCGSCG GNYNADEFWI GCDICERWFH GKCVKITPAK AESIKQYKCP SCSLRRGRP*