GBrowse Details

Vigan.09G070000.01

Basic Information:
Name: Vigan.09G070000.01
Multiple alignment
Variant Information
Position: Chr09:9558994..9564769 (+ strand)
Length: 5776
Functional Information:
Description: Similar to Uncharacterized protein. [I1JLP8, Glycine max]
GO: Biological Process: proteolysis (GO:0006508)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: serine-type endopeptidase activity (GO:0004252)
InterPro: Peptidase S54, rhomboid (IPR002610)
Peptidase S54, rhomboid domain (IPR022764)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.10,0.27,4.49,2.03,7.59,4.05,34.79,3.70
Arabidopsis thaliana homolog: AT2G29050.1
Automatic updates:
Name: NM_001255208 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max inactive rhomboid protein 1-like (LOC100805186), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:9558994..9559152 (+ strand)
Length: 159
Type: five_prime_UTR
Position: Chr09:9559153..9559466 (+ strand)
Length: 314
Type: CDS
Position: Chr09:9560983..9561146 (+ strand)
Length: 164
Type: CDS
Position: Chr09:9561371..9561534 (+ strand)
Length: 164
Type: CDS
Position: Chr09:9561635..9561894 (+ strand)
Length: 260
Type: CDS
Position: Chr09:9563521..9563647 (+ strand)
Length: 127
Type: CDS
Position: Chr09:9564303..9564425 (+ strand)
Length: 123
Type: CDS
Position: Chr09:9564426..9564769 (+ strand)
Length: 344
Type: three_prime_UTR

>Vigan.09G070000.01 class=Sequence position=Chr09:9558994..9564769 (+ strand)
TTTCCATGTT GAACGATAAA CAAATACAAA TAATGTACAA AAAGTCCACC CGAAGTGGTT GAGCTAAACC TCCCATTTTC
CCTTCTTAAA ATCCTTACAT CACCTTCCTC TGACTCGATC CATTCCACTC CCAAACTCTT ACCAAATCAA CCCACATTCA
TGCCCGGAGA ACCACGCCCC TTGGAGATCC ACCTCAGGGT CAATTCCAAG AGAAGCAACG CCAACATGGT GCACCCTGTG
GCCGTGGAAA CTGTGTACCC GGTTCAGCCC CAGAGACAGG AAGTCAAGCA TTACCGCAAG TGGTTTCCTT GGTTGATACC
TCTCTTTGTT GTTGCTAACA TAGTTTTGTT TGTGATCACT ATGTATGTCA ACAACTGCCC CCATAATTCT GTCTCCTGCA
TTGCCACCTT CTTGGGTCGC TTCTCCTTCC AGCCCTTCAA AGAAAACCCC CTCTTGGGCC CTTCATCCTT GACGTGAGTC
AGTTTTTTTA TTATTCTTGT CACTCTTTTG ATTCATAGGA ATTGAACAAA GCTATTTTTT TTTTACTACA ATTAACACGC
GGTTCAATCA ACTCTGTTCG AGATCCCATA TAGATAAGAA AGTTTTACTT TTACATCATA TAAATGGAGC AATCCTCATC
TCTTGGAAAG CTGGTATTGT AATATTGAGT TAGCCTCAAA GTTCCCTTCT TAAGAAACTC AATTAGAATC TTGTATGTTT
TTGTTGTTGC GAGCTTGGAT TTTTTACTCT GGGTTTAATG AGTTTTGTGA GCCTGTTTAT GTATATTTTG GGTAAATAAT
TGTTTATTTT TCTTACTAAA ATGGGTTTTA AAAAGTAAGT AATTGTTTTT AAAGTGTTAT TCAGTTATGG ATAATTGTAC
CAATGTTTTA AATAGTGATC TTTGATATTG CAAAAAGTTA TGGATAGAAA GGGACCGGAA TCGTTATGAT CTTGATATTA
GGAAAAGTTG TGAACAAATC TGGCTGCAAT TTGTGGTTCA ATGGAAACCT TGATGTTGTG GTTGTAATTG CGGTTGGGGA
AGTGGGGACT TTCCTTTAAG ACGTTTAATT GTATTGTTGT TACTCTTATT AATGTATTTG AATATTTCAG TACTTTTTTT
TTCTTTTAGT TTATTTTGAT ATTATGTGTT CAACAATACA GCTACAGTTT TAAAATTTTA ATTTTCTGTT ATTATTTAAG
TTTCACCGTG TTTTTAAGCC TAAGAAATGG AGAAATGTTA CTGTCTCTAA TTCTCTTTCG TTTTCAATAA GTGTCACGAT
AAAAATGAAG TGTTTGAAAG AGAAAGTTTG AAAAGTTGTT TCTGAGATTC CTATTTTTAA AATAAGAAAA AAAAATGAAG
GAGGGAGCAA ACAAAGGAGA ATGAGGGAGA AATATGAAAA GAGAGTGAGG AGTTAACTCT ATATGATAGC GAGGAAGTTA
AAAAGAGCAT GAAATGGAGA TAAACATGCC AGTTACTTAA TAAAAATCAA GAATAAAAGT GTCCAATACA AAAGGGAAAC
CAAAGTAGAA TATCACACAG TAATTGTTAT AGATCATAGA TTTGTAAAAG TGTTGTTGGC TGACTTAGAT ACCTTAAGTA
ATATATTGAG TTTGAGAAAA CGTTTTGAGA AGAGAGATTT TACTAGAGAT AACTAATATT AATGTCCTTG TGATCCAAAA
ATCATAGATG ACAAGGCAGA ATGTTTATCT TGCGAGGGGA AATTGGCTAT ATGGATCACA TAACATCATT GGACTTCTTA
AAGACCTGAG TTATCCTTGT TGAGATATCA ACAAGTTTTA ATTGCTTTGG CTATTAGGTG CTTATGATTA TATACTATTT
AAATTTATTA TCGCATAATG GTGGTGATGG TAATGATGTT GAAATAGTAC TGAGATTTAT TTGTGTGGTT TTCATTATCT
GATGAGAAAT TTGGATTATG AATTTGACTG TTGCTGGATT TGAAGATACG GGATTTGATT ATTGTTCAGG TTACAGAAGG
TGGGGGCTCT TGATGTGGGC AGAGTGGTTC ATAGACACCA GGGGTGGCGC CTTATCAGTT GTATGTGGCT GCATGGTGGG
GTTTTCCATC TGTTGGCAAA TATGTTGGGT ATTCTAGTAA TTGGAATTCG GCTTGAGCAA GAATTTGGGT TTGGTATGTA
TGTGTGATGA TGTGACATAT TCAAGATTAA GGCTTGTTTC ATTTTTATGT GGCTTGTGAT TATCAGCTTC TGTCATAGTA
ATTTAGATTG AATCTCTCTA AAATTTCCCT TTAGACTTTA GTTTCTCAAC TAAGATGTGT GCTTTTCTTG TGTCATGTTA
TTGTTTACCT GGTTTAGCTC TAAATTCTTA ACTGATTCTT CCATACTTGT GAAACAGTGC TTATTGGACT GCTATTTGTC
ATATCTGGAT TTGGGGGAAG TTTGCTTTCT GCTCTTTTCA TCCAGTCAAA CATTTCTGTG GGTGCTTCTG GTGCACTTTT
CGGCTTGCTG GGAGGCATGC TTTCGGAACT CATTACTAAC TGGACTATAT ATGAGAACAA GGTGCTTGTT AAATTGCTCA
TTTGAAACTG TGAGTGTTTC AAAAGGAGAG AACATCTTAA AAGCAACCTA CTGACAATCA AGGTTTTCTT TTCATGTGAA
GCTGGCAGCA CTACTCACCC TTGTGATCAT CATCGTTATC AATCTAGCAG TGGGAATTCT CCCACATGTG GACAACTTTG
CTCATATTGG AGGCTTTCTT ACAGGATTTC TTCTCGGATT TGTGTTTCTG ATACGTCCCC AGTTTGGATG GGTTAACCAA
CGCTATGCTC CCCTAAATTA TTCTCCAGAA CGAGCTAAGC CTAAATTCAA AAAGTATCAG TGCATCTTAT GGGTCCTCTC
TCTTGTCATT CTAATTGTTG GGTAAGCATT TTTTAAAGTG TCATTTTTTT CAAGATCAAG TTGCTCTTTC TAATGCATGA
TGCAAGGAGA GACTTAACAT AATTAACCCT GCTGAGATAT AACATGAAAC CTGGACTTTC CTCTAGATGT TGGGGTAGAT
GCAGTCTTGG TTTACCGCAG GTAGTAAGAG GTTTGGATTC AGTTTGTAGT ATACTGAAAG AAAAATACAT ATACCTTGAG
AAGCCAAGTT GTATGCTTTA GGCAGAAGCT AGAAACATAT CAAACCCATA AAAAATCTGC TCCTACATTT ACTGTATATT
GAAACTCAGT TTCATGATTT TAATTAATTT GACAGTCATT TCTAAAATAA TTGTTCTTGC TCATATTAAT TAGATAAATG
GCTGGTGTGA AAAAGGAAGA TTCTTTTAAA CAATTATTGT AGTTATATGC AATTTTAGAA AGACTAACTG CAATTTCTAC
TTGAATCTCT GACGACTATA TAGAACTCAA ACATGTGATT CCAAGTGGCA CTGATGAAAT GAATAATGTT AAACAGATAC
TAGATCGTAG GTTTTTGGCA ACAAAGCTAA TATTAAAGTT CTGCAGAAAA GATCACAACA CGAAACATAC ATTGATAGAT
GGTTCTTTTT ATATCGTGCA AAGCTGATCT ATTTAATACT CACTGTATTG TTGTTATTGA TTGAGTGGAA CCATATACTT
ATATTTTTTT AATAGTGAAC AAATTGTTGA TAGCATTGGT AGATGAATAT CGTATTCATC TATTGTAATC TCCTTTAAAT
AGTGTAAACT CGTTCAAATG GTGGTTTAAT TCAGTGTTGT TCAATGGGGA GTATGAGTAC AAAAGTCGTT TAAGTAAATC
AATGAAAAGT TTTGGTCCTA TTGAATATAT ATATATGAGA AGGACCCTAA GGTCAACCCA TGAAAATAGT GTTTAATGCT
TCTTGAAAAA TTTGTGGTAA TGTTTTACTG GCTTGAATGA CATCAGAATT TCCCTAACAA CCTTTTCAGG ATTGTACTAG
GTAAGAATCT ACTGCTTACA GAAGCAGAGG TCACAGAAGA TAAAATGTCA CCAAATATAA TTAGAGATGT CTTAAATAAT
AAAGATTCAA ACGAAGCTTT GCCCTTGCTC TTAAAGTTAC AAGTTGATTA CACCATGTTC ACAGGATGTG TTGTCGCTGA
AACTGGTCCA GATTCTTCTC TATTGATGTG TAGTCGGTGA AACTGAGTCC AGATTCTTCT CTATTGAGTT TTTGGTGCTG
TCTCTCTGTT GAGCATTCAA AATACACTGA TGGACACCAA TTTTAATGTT TTAAAATATA AAATAAACTT TTTAAATATA
CTAACATCAT TGTTTGTTGA AGACTCGGTA GAAGGACAGC ACAAAAAACT TAGTAAAGAA TTTAAATTCG TGAAACTCTA
TACACTGGAG TGGATGCATG CTTTTTAGTT GTTAATTGCT AAAGAAATTT GATTGCTTTG AAACTCAAGA ATTTTAAATA
CGATAGGAAT TCTCTTTTCA GAGCTGTGCC TGCTCCCTCA TTTTATTTGT ATTCTTGTGT TTTTCCGTTT ATTCATATTT
AATATAGACC ATTTGTTCTG TCCATGTTAA CTTTTCGTAT GTAACAGGCT TTCTGTTGGG CTTGTCGCGC TTCTCCGTGG
TGTTGATGCA AATGACCACT GCTCCTGGTG CCATTATCTG TCTTGTGTTC CAACGTCAAA ATGGAGCTGC CATACAGAGC
CATCATATTG TGTGGTAAGC ATTTTACCTG AAAGCTTCTT CTCATGAGTA ATACCATATC CTATGAATTT ACATATTTTA
CATCTCACAC CGTTTCCATG TATTACTGTA CTATTATTGT ACAAAATGTC TCAACTATTT AGCGATCTGC GAAGAAGAAA
TCATCTTGGT ATTACCATCA ATCGAACACA TGTTACCAGA TTAAAAATGT TTTTAGTTCT TACAAACAGG GCATATGTTT
GTATTTAGTC ATACAAAAGT TGTCTTCCTT TAGTCTCTCT CATTTATGGA AATGTATTAG ATGTAGTCCT TGATCATCAT
AGAATATTGT TTCCTTCTGG TCCATTGTTT GTTCATGGAA ATAGAGAACA CATCTGACAC TTTTCTATAA ACTAGACAAA
AAGGGATTTA AAAATATTTG CTTCAATGTT TTTATTAAAT GCAGTTTTTT GTTAGAGATC TCACTGACAT AGATAAGTCA
AATTTACCGT ATATAACTGT TCAAATCTCT TACAAACAAT TTTATAAGGT TAAGTTAGAT TTTGTGTTCA ATTTTTAAGA
TTTTTTTATC ATCAAATTCC AAAACTGCCT TGTACTCATT AACAGTTTTA AAATGTTGTT TTCTGTTATT TTTGGTTCTT
AATGTATTGT TTAAATACTA CTAATGCAGT CAAATCAGCT TGGTAACCAG CTGAATGTAA CATGCTCAAG CAATGGTAAA
TCCAGTACAT ACTTCATGCA AGATCCAACC AGTTCCCAGA TCCAGCAACT ATGTACTCAA CTTTGCAGTT GAGTTCTAAC
AAAAGTGATG ATCATTGGAA GATGTTCATC TGTCCATAGT AGTGTTTCTG GCTCTCAAAC AAACTTCAGT GCTCTTTTAT
TTATAGACAC GATTAGAAAA TATTCATTTT GCTTTTGTAG ATTTGTTCAT TTTCCAGTGT ATATAATATT GATTGATTTT
GTATTTCTTT ACTACCTTTG TGTGAGATCA AAGATACAGT TATTGATGAT TAATGTATCA CCCTAACTCC TGTTTGCTAA
TAGCTTGTGA TTGCATTACA AATTTAGCTT AAGAAAATGT TGTTAAGAAT AGACTGCATT TATGATTAAT GTAAGCTAAT
TTAATATTAG TTAACG

>Vigan.09G070000.01
TTTCCATGTT GAACGATAAA CAAATACAAA TAATGTACAA AAAGTCCACC CGAAGTGGTT GAGCTAAACC TCCCATTTTC
CCTTCTTAAA ATCCTTACAT CACCTTCCTC TGACTCGATC CATTCCACTC CCAAACTCTT ACCAAATCAA CCCACATTCA
TGCCCGGAGA ACCACGCCCC TTGGAGATCC ACCTCAGGGT CAATTCCAAG AGAAGCAACG CCAACATGGT GCACCCTGTG
GCCGTGGAAA CTGTGTACCC GGTTCAGCCC CAGAGACAGG AAGTCAAGCA TTACCGCAAG TGGTTTCCTT GGTTGATACC
TCTCTTTGTT GTTGCTAACA TAGTTTTGTT TGTGATCACT ATGTATGTCA ACAACTGCCC CCATAATTCT GTCTCCTGCA
TTGCCACCTT CTTGGGTCGC TTCTCCTTCC AGCCCTTCAA AGAAAACCCC CTCTTGGGCC CTTCATCCTT GACGTTACAG
AAGGTGGGGG CTCTTGATGT GGGCAGAGTG GTTCATAGAC ACCAGGGGTG GCGCCTTATC AGTTGTATGT GGCTGCATGG
TGGGGTTTTC CATCTGTTGG CAAATATGTT GGGTATTCTA GTAATTGGAA TTCGGCTTGA GCAAGAATTT GGGTTTGTGC
TTATTGGACT GCTATTTGTC ATATCTGGAT TTGGGGGAAG TTTGCTTTCT GCTCTTTTCA TCCAGTCAAA CATTTCTGTG
GGTGCTTCTG GTGCACTTTT CGGCTTGCTG GGAGGCATGC TTTCGGAACT CATTACTAAC TGGACTATAT ATGAGAACAA
GCTGGCAGCA CTACTCACCC TTGTGATCAT CATCGTTATC AATCTAGCAG TGGGAATTCT CCCACATGTG GACAACTTTG
CTCATATTGG AGGCTTTCTT ACAGGATTTC TTCTCGGATT TGTGTTTCTG ATACGTCCCC AGTTTGGATG GGTTAACCAA
CGCTATGCTC CCCTAAATTA TTCTCCAGAA CGAGCTAAGC CTAAATTCAA AAAGTATCAG TGCATCTTAT GGGTCCTCTC
TCTTGTCATT CTAATTGTTG GGCTTTCTGT TGGGCTTGTC GCGCTTCTCC GTGGTGTTGA TGCAAATGAC CACTGCTCCT
GGTGCCATTA TCTGTCTTGT GTTCCAACGT CAAAATGGAG CTGCCATACA GAGCCATCAT ATTGTGTGTC AAATCAGCTT
GGTAACCAGC TGAATGTAAC ATGCTCAAGC AATGGTAAAT CCAGTACATA CTTCATGCAA GATCCAACCA GTTCCCAGAT
CCAGCAACTA TGTACTCAAC TTTGCAGTTG AGTTCTAACA AAAGTGATGA TCATTGGAAG ATGTTCATCT GTCCATAGTA
GTGTTTCTGG CTCTCAAACA AACTTCAGTG CTCTTTTATT TATAGACACG ATTAGAAAAT ATTCATTTTG CTTTTGTAGA
TTTGTTCATT TTCCAGTGTA TATAATATTG ATTGATTTTG TATTTCTTTA CTACCTTTGT GTGAGATCAA AGATACAGTT
ATTGATGATT AATGTATCAC CCTAACTCCT GTTTGCTAAT AGCTTGTGAT TGCATTACAA ATTTAGCTTA AGAAAATGTT
GTTAAGAATA GACTGCATTT ATGATTAATG TAAGCTAATT TAATATTAGT TAACG

>Vigan.09G070000.01
ATGCCCGGAG AACCACGCCC CTTGGAGATC CACCTCAGGG TCAATTCCAA GAGAAGCAAC GCCAACATGG TGCACCCTGT
GGCCGTGGAA ACTGTGTACC CGGTTCAGCC CCAGAGACAG GAAGTCAAGC ATTACCGCAA GTGGTTTCCT TGGTTGATAC
CTCTCTTTGT TGTTGCTAAC ATAGTTTTGT TTGTGATCAC TATGTATGTC AACAACTGCC CCCATAATTC TGTCTCCTGC
ATTGCCACCT TCTTGGGTCG CTTCTCCTTC CAGCCCTTCA AAGAAAACCC CCTCTTGGGC CCTTCATCCT TGACGTTACA
GAAGGTGGGG GCTCTTGATG TGGGCAGAGT GGTTCATAGA CACCAGGGGT GGCGCCTTAT CAGTTGTATG TGGCTGCATG
GTGGGGTTTT CCATCTGTTG GCAAATATGT TGGGTATTCT AGTAATTGGA ATTCGGCTTG AGCAAGAATT TGGGTTTGTG
CTTATTGGAC TGCTATTTGT CATATCTGGA TTTGGGGGAA GTTTGCTTTC TGCTCTTTTC ATCCAGTCAA ACATTTCTGT
GGGTGCTTCT GGTGCACTTT TCGGCTTGCT GGGAGGCATG CTTTCGGAAC TCATTACTAA CTGGACTATA TATGAGAACA
AGCTGGCAGC ACTACTCACC CTTGTGATCA TCATCGTTAT CAATCTAGCA GTGGGAATTC TCCCACATGT GGACAACTTT
GCTCATATTG GAGGCTTTCT TACAGGATTT CTTCTCGGAT TTGTGTTTCT GATACGTCCC CAGTTTGGAT GGGTTAACCA
ACGCTATGCT CCCCTAAATT ATTCTCCAGA ACGAGCTAAG CCTAAATTCA AAAAGTATCA GTGCATCTTA TGGGTCCTCT
CTCTTGTCAT TCTAATTGTT GGGCTTTCTG TTGGGCTTGT CGCGCTTCTC CGTGGTGTTG ATGCAAATGA CCACTGCTCC
TGGTGCCATT ATCTGTCTTG TGTTCCAACG TCAAAATGGA GCTGCCATAC AGAGCCATCA TATTGTGTGT CAAATCAGCT
TGGTAACCAG CTGAATGTAA CATGCTCAAG CAATGGTAAA TCCAGTACAT ACTTCATGCA AGATCCAACC AGTTCCCAGA
TCCAGCAACT ATGTACTCAA CTTTGCAGTT GA

>Vigan.09G070000.01
MPGEPRPLEI HLRVNSKRSN ANMVHPVAVE TVYPVQPQRQ EVKHYRKWFP WLIPLFVVAN IVLFVITMYV NNCPHNSVSC
IATFLGRFSF QPFKENPLLG PSSLTLQKVG ALDVGRVVHR HQGWRLISCM WLHGGVFHLL ANMLGILVIG IRLEQEFGFV
LIGLLFVISG FGGSLLSALF IQSNISVGAS GALFGLLGGM LSELITNWTI YENKLAALLT LVIIIVINLA VGILPHVDNF
AHIGGFLTGF LLGFVFLIRP QFGWVNQRYA PLNYSPERAK PKFKKYQCIL WVLSLVILIV GLSVGLVALL RGVDANDHCS
WCHYLSCVPT SKWSCHTEPS YCVSNQLGNQ LNVTCSSNGK SSTYFMQDPT SSQIQQLCTQ LCS*