GBrowse Details

Vigan.09G062900.01

Basic Information:
Name: Vigan.09G062900.01
Multiple alignment
Variant Information
Position: Chr09:8539482..8543302 (+ strand)
Length: 3821
Functional Information:
Description: Similar to uncharacterized protein. [C6TAR6, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Major intrinsic protein (IPR000425)
Major intrinsic protein, conserved site (IPR022357)
Aquaporin-like (IPR023271)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.18,2.68,29.20,25.82,14.43,15.51,5.92,77.25
Arabidopsis thaliana homolog: AT4G00430.1
Automatic updates:
Name: KR185760 NCBI(nuccore)
Organism: Vigna unguiculata
Description: Vigna unguiculata plasma membrane intrinsic protein (PIP1;3) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001289334 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable aquaporin PIP1-4-like (LOC100803259), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:8539482..8539815 (+ strand)
Length: 334
Type: five_prime_UTR
Position: Chr09:8539816..8540149 (+ strand)
Length: 334
Type: CDS
Position: Chr09:8541821..8542116 (+ strand)
Length: 296
Type: CDS
Position: Chr09:8542202..8542342 (+ strand)
Length: 141
Type: CDS
Position: Chr09:8542631..8542723 (+ strand)
Length: 93
Type: CDS
Position: Chr09:8542724..8543302 (+ strand)
Length: 579
Type: three_prime_UTR

>Vigan.09G062900.01 class=Sequence position=Chr09:8539482..8543302 (+ strand)
TCCAAATAAA GTTGAAACCA AACACATTTG AAGGAATTGC GCAAGTTGAG AACGAAAAAA GGTGCACCTT CCACCACAGT
GACGGCAAGA GAAATGAATT TCTCTGGGTC CCCCTAATCC CTACGGTCCT TGGGCGGTGG GAGTGTCACC ATAGTGCACA
GTTTCATCAT GCACTCTTTT CGATTTTCCT TACAACTCAC CACAACATTA ACACACCCCA CTCTATGTAC CCAATCTCAC
GCTACAAATA CCCCTCTTCA CACTCCGCCA TCTGTGACCA TTCCATTGCA TTGACCTGAA CCCCATTTTC TAAACGCTCT
CGCATTGGAA GAAGATGGAG GGAAAAGAAG AGGATGTGAG AGTTGGAGCA AACAGATATG GGGAGAGGCA ACCGATAGGA
ACTTCTGCGC AGGTGCAAGA TGCCAAAGAC TACAGAGAGC CACCCTCTGC GCCTATCTTT GAGCCTGGAG AATTGTCATC
GTGGTCTTTC TATAGGGCTG GCATAGCAGA GTTTGTGGCC ACCTTCTTGT TCCTTTACAT TACAGTCTTA ACTGTCATGG
GTGTGGCCAA ATCAAACTCC AAGTGCTCCA CTGTGGGCAT CCAAGGCATT GCTTGGGCTT TTGGGGGAAT GATCTTTGCT
CTTGTTTACT GCACTGCTGG TATCTCAGGT GAAATGAAAT ACACTATCAT TTATTTTCTT TAATTTTTAT AAACATTTAA
TGTTTTTTAA GTGAAAATGA TATGTTTGGT ATGTCAATAT ATTAGAAATA TTTGACTTTT CATGGCAAGA AAGATTAGAT
ATGATTCTTT TGAAGTGAAC TAGAAAATTG GTTATTCATA TTTTGACATA TTTATGGGGA TTTTTTTTTT TTCATTTCGC
AATCCAGATT CATGAATTCC TCAGTCTAGA GGAGTCAGAT CTGAAAGAGA AATCTTAGAG GTGAAACAAA ATAATTAATG
TTTAGTGAAA GAGTGAAAGG TACCAAAGTT CTTCAAATTT GAGAGTTTCC CTTATACTAG TTTCAGTAAA AATTTCATGT
TATGAAACAT TCAAGATACC ATGTTTAGTT AAGTTTCATA AGCATATAAA TATAATTTCT ATCCTACCTT ACCGAAATAA
TAATGATTAA GAAAAATTAG TTAAATGATT ACATCGTGTT TTGAAAATAC ACTTTAATAT AAACAAATAA TCTTTTGTAA
ACATGATTTT ATGTTTACAA AAATAAAGTC ATGCTATAAA ATACAACTTT AATTTTTATT TTTTGGTAAA AGGAAATATA
TACGTTTTTC CCATACTTTT TTAATTTTTA ATTTTAATTT TATTTTTCTT TTTTCTTTTT CTTTTATAAA ATTCGTGTTT
TGAATGAATG GTTTTTTATT ATTTTATTTT ACTTTTATAG AAGTCGTATT TGACTTCTTT CTTTTTAATT TTTAACATTT
TTATACTATT TTAAATTTTT GAATAAATTT ATTTTTTATT TTGAAATACT TTCTTCATAA TTTGATTAAT GTATTTTTAA
AATTTTATAT AAACATTTTT TTTACTTTGA TATATTTTTA AATGATTTAG TTAATAAATT AAAATCAGGA ACTTGTAATT
GGTCTTAACA TGTACGAGTT ATTCTCTTTT ATTTTTTTTA AACAAATATA TTTTTTGGTT TGAAATTTTA TTTTTAAGTA
TTTGGTGAAC AAATTTTTAA AATTTTTATT TGAACATATA TTATTGTATT TAGAGATGTT TTAATAATTT GATCAATAAA
TTCAAATTAA AAATTTTTAA TTTTTTATTT TTAAATTACT TTTTCATTTT TATATAAACT TATTCTTTTT ATTTCTTTTG
GATAATTTTA TTGTTAAACT TATATTTTAA TTCATTGATT AAAGTATAAA ATTTTAAAAT TTATCCATTT CAATAATTCA
AATAAATAAT ATATATATAT ATATATATAG CTCTCTCGTA GTAAATAATA AATGCATATA AAATGTTATC AAATTTTGCG
AGAAAGTATC AAAAGGGGGT GAAAATAAAG TTTTGGCATG ATCAAGTGAT GTGTGGGAAA ATATAACATG AAGGAATACA
TTTTCATATC CTCAGAATGC AATAATTTAG ATGTTTTAAT AGATTAAAAC TATGAAGCAG AAGACATTCA ACAACTGAAT
TAAATATACG ACAAAGCTAA TCTGACGAGA TGTAAGTTAC ATGTATCATA TGATTCTATT TTGTCTCCTC ATTATATAAA
GGGACTAATG TCTAACTACT AATATCCATG AAGAAAAACA TGAATGATGT GTAATCTCCC TAATTTTGGT TTTTGATTTG
TCTGAATTTG GTAATGCAGG GGGTCATATT AACCCAGCAG TGACATTTGG GCTGTTCTTG GCACGCAAAC TGTCTCTGAC
AAGAGCAATA TTTTACATAA TTATGCAGTG CCTGGGAGCT ATATGTGGGG CAGGTGTAGT TAAGGGCTTT CAGCCAAACG
TGTACGAGAG AGTTGGTGGT GGTGCCAATT CAGTCCAAAC AGGGTATACC AGAAAGGCTG GCCTCGGAGC AGAGATTATT
GGTACATTTG TGCTTGTTTA CACTGTTTTC TCTGCCACTG ATGCAAAGAG AAATGCTAGA GACTCCCATG TTCCAGTAAG
CAAAACTTTT CCCTTATTTG CAGCTTCTTA GTTCTTGTTT TGTGATCACG AATCTAATAA TAGAAATATG AATGGATTAG
ATATTGGCAC CATTGCCTAT TGGGTTTGCT GTCTTTTTGG TGCACTTGGC TACAATTCCT GTTACAGGGA CTGGTATCAA
CCCTGCTAGA AGTCTTGGTG CAGCCATTGT ATACAACAAC GACTCAATTT GGGATGAACA TGTGAGTTAT CTTTAATTTT
GTTTAGATTT CTTTCTGCTT GCCTTTCTTT TTGTTTTCAC TTCTTATAAA CGTATTTTCT CTATAGCCGG AAAAAAACAT
TAACAAATCA GTAATTCAAT TTAGTGACAA AAACTATCAT ATCATTCGTG TAATTAAGGC AACAAATTTT AGTGATTTGT
TTTTAAAGTT ATGTATAAAC TATTTCATTA ATAATTTTTA TTTTTCCTTA TTAAGAGTGT GTATTTAAAA AATAGTTTAA
ATTTTCCAAA TTGTACCGTT GTGATGCAGT GGATTTTTTG GGTTGGGCCT TTCATTGGAG CAGCACTTGC AGCTTTGTAC
CATCAGGTAG TGATCAGGGC CATCCCCTTC TCGTCCAAGT GATTCAACAC TGAGGGTAAA TTGAAGCAAT GCTTCAAAAA
TAAAAGTAGT AATTGCCATG TAAAACATGT TCCTATCACT TCTGCTAATG ATTTATTACT ACTATTGTTA ATGTATGTTT
TATTTATCTG TTTAAATTTC CTGTATTCGG ATACGCTAAA GAACTTGTTG AAACAGAGGT AAGCATGGTT CATTGCTCTC
TATTTTTAAG AGCATCCCTA CACAAAGCAT GACGAAAATG CTTCATAAAT GGAACTTTGT TTTGTGTGGA TGAAATATAT
ACAGCGCAAC TTTATTTTGA TTGTTAAGAT GAGTGCAAAA TTGTAATGCA AAGTCGAATA AATTTTTGTT CTGAATATTT
GGAGCAAGTA ACAAAACAGA ACATGTTATT ACCGAAAAAT TTATCAGGTT AATATGAGGT GAATTAGTTT GATGTTTGAA
GTGGGTAGGA ACTATGAATT GTAACTAGAG GAGAAGTTCA CTCTCAAGTA AGTAAAAGGT ATGTTATGAG TATGAAAATG
AAAGAATAAG TATTGAATTT GATTAATACC TATGATTGAG AGTATTTATA GGCATTTGTT G

>Vigan.09G062900.01
TCCAAATAAA GTTGAAACCA AACACATTTG AAGGAATTGC GCAAGTTGAG AACGAAAAAA GGTGCACCTT CCACCACAGT
GACGGCAAGA GAAATGAATT TCTCTGGGTC CCCCTAATCC CTACGGTCCT TGGGCGGTGG GAGTGTCACC ATAGTGCACA
GTTTCATCAT GCACTCTTTT CGATTTTCCT TACAACTCAC CACAACATTA ACACACCCCA CTCTATGTAC CCAATCTCAC
GCTACAAATA CCCCTCTTCA CACTCCGCCA TCTGTGACCA TTCCATTGCA TTGACCTGAA CCCCATTTTC TAAACGCTCT
CGCATTGGAA GAAGATGGAG GGAAAAGAAG AGGATGTGAG AGTTGGAGCA AACAGATATG GGGAGAGGCA ACCGATAGGA
ACTTCTGCGC AGGTGCAAGA TGCCAAAGAC TACAGAGAGC CACCCTCTGC GCCTATCTTT GAGCCTGGAG AATTGTCATC
GTGGTCTTTC TATAGGGCTG GCATAGCAGA GTTTGTGGCC ACCTTCTTGT TCCTTTACAT TACAGTCTTA ACTGTCATGG
GTGTGGCCAA ATCAAACTCC AAGTGCTCCA CTGTGGGCAT CCAAGGCATT GCTTGGGCTT TTGGGGGAAT GATCTTTGCT
CTTGTTTACT GCACTGCTGG TATCTCAGGG GGTCATATTA ACCCAGCAGT GACATTTGGG CTGTTCTTGG CACGCAAACT
GTCTCTGACA AGAGCAATAT TTTACATAAT TATGCAGTGC CTGGGAGCTA TATGTGGGGC AGGTGTAGTT AAGGGCTTTC
AGCCAAACGT GTACGAGAGA GTTGGTGGTG GTGCCAATTC AGTCCAAACA GGGTATACCA GAAAGGCTGG CCTCGGAGCA
GAGATTATTG GTACATTTGT GCTTGTTTAC ACTGTTTTCT CTGCCACTGA TGCAAAGAGA AATGCTAGAG ACTCCCATGT
TCCAATATTG GCACCATTGC CTATTGGGTT TGCTGTCTTT TTGGTGCACT TGGCTACAAT TCCTGTTACA GGGACTGGTA
TCAACCCTGC TAGAAGTCTT GGTGCAGCCA TTGTATACAA CAACGACTCA ATTTGGGATG AACATTGGAT TTTTTGGGTT
GGGCCTTTCA TTGGAGCAGC ACTTGCAGCT TTGTACCATC AGGTAGTGAT CAGGGCCATC CCCTTCTCGT CCAAGTGATT
CAACACTGAG GGTAAATTGA AGCAATGCTT CAAAAATAAA AGTAGTAATT GCCATGTAAA ACATGTTCCT ATCACTTCTG
CTAATGATTT ATTACTACTA TTGTTAATGT ATGTTTTATT TATCTGTTTA AATTTCCTGT ATTCGGATAC GCTAAAGAAC
TTGTTGAAAC AGAGGTAAGC ATGGTTCATT GCTCTCTATT TTTAAGAGCA TCCCTACACA AAGCATGACG AAAATGCTTC
ATAAATGGAA CTTTGTTTTG TGTGGATGAA ATATATACAG CGCAACTTTA TTTTGATTGT TAAGATGAGT GCAAAATTGT
AATGCAAAGT CGAATAAATT TTTGTTCTGA ATATTTGGAG CAAGTAACAA AACAGAACAT GTTATTACCG AAAAATTTAT
CAGGTTAATA TGAGGTGAAT TAGTTTGATG TTTGAAGTGG GTAGGAACTA TGAATTGTAA CTAGAGGAGA AGTTCACTCT
CAAGTAAGTA AAAGGTATGT TATGAGTATG AAAATGAAAG AATAAGTATT GAATTTGATT AATACCTATG ATTGAGAGTA
TTTATAGGCA TTTGTTG

>Vigan.09G062900.01
ATGGAGGGAA AAGAAGAGGA TGTGAGAGTT GGAGCAAACA GATATGGGGA GAGGCAACCG ATAGGAACTT CTGCGCAGGT
GCAAGATGCC AAAGACTACA GAGAGCCACC CTCTGCGCCT ATCTTTGAGC CTGGAGAATT GTCATCGTGG TCTTTCTATA
GGGCTGGCAT AGCAGAGTTT GTGGCCACCT TCTTGTTCCT TTACATTACA GTCTTAACTG TCATGGGTGT GGCCAAATCA
AACTCCAAGT GCTCCACTGT GGGCATCCAA GGCATTGCTT GGGCTTTTGG GGGAATGATC TTTGCTCTTG TTTACTGCAC
TGCTGGTATC TCAGGGGGTC ATATTAACCC AGCAGTGACA TTTGGGCTGT TCTTGGCACG CAAACTGTCT CTGACAAGAG
CAATATTTTA CATAATTATG CAGTGCCTGG GAGCTATATG TGGGGCAGGT GTAGTTAAGG GCTTTCAGCC AAACGTGTAC
GAGAGAGTTG GTGGTGGTGC CAATTCAGTC CAAACAGGGT ATACCAGAAA GGCTGGCCTC GGAGCAGAGA TTATTGGTAC
ATTTGTGCTT GTTTACACTG TTTTCTCTGC CACTGATGCA AAGAGAAATG CTAGAGACTC CCATGTTCCA ATATTGGCAC
CATTGCCTAT TGGGTTTGCT GTCTTTTTGG TGCACTTGGC TACAATTCCT GTTACAGGGA CTGGTATCAA CCCTGCTAGA
AGTCTTGGTG CAGCCATTGT ATACAACAAC GACTCAATTT GGGATGAACA TTGGATTTTT TGGGTTGGGC CTTTCATTGG
AGCAGCACTT GCAGCTTTGT ACCATCAGGT AGTGATCAGG GCCATCCCCT TCTCGTCCAA GTGA

>Vigan.09G062900.01
MEGKEEDVRV GANRYGERQP IGTSAQVQDA KDYREPPSAP IFEPGELSSW SFYRAGIAEF VATFLFLYIT VLTVMGVAKS
NSKCSTVGIQ GIAWAFGGMI FALVYCTAGI SGGHINPAVT FGLFLARKLS LTRAIFYIIM QCLGAICGAG VVKGFQPNVY
ERVGGGANSV QTGYTRKAGL GAEIIGTFVL VYTVFSATDA KRNARDSHVP ILAPLPIGFA VFLVHLATIP VTGTGINPAR
SLGAAIVYNN DSIWDEHWIF WVGPFIGAAL AALYHQVVIR AIPFSSK*