GBrowse Details

Vigan.09G039200.01

Basic Information:
Name: Vigan.09G039200.01
Multiple alignment
Variant Information
Position: Chr09:4537425..4540084 (- strand)
Length: 2660
Functional Information:
Description: Similar to 40S ribosomal protein S8. [V7APP2, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S8e (IPR001047)
Ribosomal protein S8e, conserved site (IPR018283)
Ribosomal protein S8e/ribosomal biogenesis NSA2 (IPR022309)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:341.65,428.42,196.84,104.45,297.50,377.22,219.92,141.29
Automatic updates:
Name: BT092526 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-11K23 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:4537425..4537749 (- strand)
Length: 325
Type: three_prime_UTR
Position: Chr09:4537750..4537825 (- strand)
Length: 76
Type: CDS
Position: Chr09:4537910..4538082 (- strand)
Length: 173
Type: CDS
Position: Chr09:4538483..4538813 (- strand)
Length: 331
Type: CDS
Position: Chr09:4539757..4539926 (- strand)
Length: 170
Type: CDS
Position: Chr09:4539927..4540084 (- strand)
Length: 158
Type: five_prime_UTR

>Vigan.09G039200.01 class=Sequence position=Chr09:4537425..4540084 (- strand)
CCGGGAGAGT GGAGTTGGAT CAGCAAAAGG TAGGGTTTCG TTTGTTGAAA TATATAAGGC GTAATATTAG GGTTTTTTCA
GGGAGCCAAG AAGCAGAGAG ATACAATACA GAGTGTGTTG TTGCTTCTTC GCCACAACTC AACAACATGG GTCAGTAGAT
GCTTCCCTCA AATCTTTCTT TCGTTGATAT TGCAAACGAA AACCCTAATT CCATCTTTTC TAATGGGATT TCTTATTCTT
CTTCTTCTGA ATCAGGTATC TCCAGAGATT CTATGCACAA GAGGCGTGCC ACTGGTGGCA AGAAGAAGGC CTGGAGGAAA
AAGAGAAAGT GTGTGCCCCT TTTGCTTTAT TTATTTCATT GTTTTAGTTT TGTTTCGTGT CCATCTAAAT TTGTGTATTT
GAATTTAGTC ATATCTCTCT TCTTTTACAC TGACTAGACT AATGTTGTTG CTAGTAGTGT GAGATATGTG TGTGTAGGAG
TTTTTGGTCG TTTTGATTAT TACGATGTTT TGGGATTTGT GCTTGGTTTT ATTTTGGGGA TGACGGTTTG AAATTGAAAT
TGTGTCTTTT TGCGTAGATA AGGTTGTTTT TTCAGTGGAG ATTTGAAATG TAATTCTGTG TGTAATTGAG CGTATAGCGT
ATCTAGATTT AGTTGTTCTT CGATTGAGGT TTTGATGGGA TAAGGGGAAA ATCAAAATTG TACTAGAGAG TCGTGTTGAA
CTTTGGTGCT AAATTGTGAA ACTGTTTCAA ATCTTAATTT GATTTCTTTA CACTGCTTGC TGCATTTTCA TTACTCTGTT
TTAGCTAGAT TTGGACGGTC CTTGAGTAAA ATCGAGAACT TCCTTTTGGC TATGCCTCCC CTTGTAATGC TTTTTTATTA
GCAATTGTCT GGTGCGTGGT TCTGAAATTT TAAGAAATGG ATTATTGTAC CGTGTTTTTT TTTTCATTTA TGTCAAATAC
AGAATCATCG AGTGGAGAAT TTAGATACAA CAACTAGGAG AATATAGGAT TTTTTACTTT GAACAAACAG TGACTGAATA
TAGTGCTTTA CATTTATTTA GGTTTTTGGA TCTTTTTACT AATTGTTTTG ATACCATTCT TAAATATCCC CTATATTTTT
CTCATTATAT TTTAAGCAGA TAATTACCTG TTTCTATTTT GATAAACGTA ATTACAACAT GTTATAATTA TTATACTACA
CATTTTTGGC ATTTTTTCTA AACCATGATG ATATACTCTA TTAATTATTT TTTATTGGTG GTTTCTGATA GGTATGAGCT
TGGTCGCCAG CCTGCTAACA CTAAGCTGTC AAGCAACAAG ACTGTCAGGA GGATCCGTGT TAGAGGTGGC AATGTGAAGT
GGAGAGCACT GAGATTGGAT ACTGGAAACT ACTCTTGGGG AAGTGAAGCT GTAACTCGCA AGACTCGTAT ACTTGATGTG
GTATACAACG CCTCAAACAA TGAGCTTGTG CGTACTCAGA CCCTTGTCAA AAGTGCTATT GTTCAGGTTG ATGCCGCTCC
CTTCAAACAG TGGTATCTTC AGCACTATGG TGTTGACATT GGTAGGAAGA AGAAGACAGC TGCAAAGAAG GATTCCGCAG
AGGTTGTGCC TTTGGAACAT TCCCTTTGTG TTCTATTATT TTGTGATACG TTTTTCTTAA TCGACTCTTT ATGCTCTCAT
AACATAGAGA CTCTTTCTTG TCTTCGGTTC ATTGGATACA GTATCTGAAC TATAATATGT TCTGAAAAGT AAATTATGTG
TATATAGTCT AGCAGCCATA ATATTCTATC TTTCAATATT TTCTCAGTCT GATTTGACAT GATAGCTAGG ATGTAATGAA
TTGCATTGCT AAACAGTGTT TTATAGACTA TTAAAATCTG ATGTGTTTCT AGCTGGTTCA AGTTACTACT TGCGCAACAC
CTATTTGTTT TTATTAGGAA TAAATATATG GAACATTATA AAAGCTGATA CCTATTTATC TATCTTGGGA TTTAATCTGC
AGGAGGGTGA CGCTGCAGCA GCAGAAGAAG CCAAAAAGAG TAACCATGTG CAAAGAAAAC TAGAAAAGCG CCAGAAGGAT
CGCAAGCTTG ATGCTCACAT TGAGGAGCAG TTTGGTGGTG GTCGTTTACT TGCTTGCATT TCCTCTCGAC CTGGTCAATG
TGGCAGATCT GATGGGTAAT TACTTGAATT GTCACTATGC TTAATGTGTG TATAACGAAC CACTTTCATA ACTATTTCCT
TTTTTGCTGG GTTATGCAGC TACATTCTGG AAGGTAAAGA GTTGGAATTT TACATGAAGA AACTCCAGAA GAAGAAGGGG
AAAGGTGCTG CCTGATTTTA GGTTTTCCCC AATTTTTATA TATGGCTTTA GTCGTTTTTA TTTGTTGCTG GTACCATTCA
TGCAGATGTT TTGTGCCACA GGACATTTAG TGCAAACTAT CATCCTAGTA TTTCAAATTG ACACTTAATT TTGTTTTTAA
CTGTTTTTTG CTTCTGATGA GTTACAATTT TATAAATGAA TGTCTTTTAA TCCTTATTGT TGGGGTAGTC AGGGAAGGTG
TCTTCAATAT AAATGTGAAG ATATATCAGA TAGGTTCCTC TCTTTTTTAA AATAAGCAGT ATGATTTAAT ATTAACAATC
TTATTTAGAT TTTATTTAGA 

>Vigan.09G039200.01
CCGGGAGAGT GGAGTTGGAT CAGCAAAAGG TAGGGTTTCG TTTGTTGAAA TATATAAGGC GTAATATTAG GGTTTTTTCA
GGGAGCCAAG AAGCAGAGAG ATACAATACA GAGTGTGTTG TTGCTTCTTC GCCACAACTC AACAACATGG GTCAGTAGAT
GCTTCCCTCA AATCTTTCTT TCGTTGATAT TGCAAACGAA AACCCTAATT CCATCTTTTC TAATGGGATT TCTTATTCTT
CTTCTTCTGA ATCAGGTATC TCCAGAGATT CTATGCACAA GAGGCGTGCC ACTGGTGGCA AGAAGAAGGC CTGGAGGAAA
AAGAGAAAGT ATGAGCTTGG TCGCCAGCCT GCTAACACTA AGCTGTCAAG CAACAAGACT GTCAGGAGGA TCCGTGTTAG
AGGTGGCAAT GTGAAGTGGA GAGCACTGAG ATTGGATACT GGAAACTACT CTTGGGGAAG TGAAGCTGTA ACTCGCAAGA
CTCGTATACT TGATGTGGTA TACAACGCCT CAAACAATGA GCTTGTGCGT ACTCAGACCC TTGTCAAAAG TGCTATTGTT
CAGGTTGATG CCGCTCCCTT CAAACAGTGG TATCTTCAGC ACTATGGTGT TGACATTGGT AGGAAGAAGA AGACAGCTGC
AAAGAAGGAT TCCGCAGAGG AGGGTGACGC TGCAGCAGCA GAAGAAGCCA AAAAGAGTAA CCATGTGCAA AGAAAACTAG
AAAAGCGCCA GAAGGATCGC AAGCTTGATG CTCACATTGA GGAGCAGTTT GGTGGTGGTC GTTTACTTGC TTGCATTTCC
TCTCGACCTG GTCAATGTGG CAGATCTGAT GGCTACATTC TGGAAGGTAA AGAGTTGGAA TTTTACATGA AGAAACTCCA
GAAGAAGAAG GGGAAAGGTG CTGCCTGATT TTAGGTTTTC CCCAATTTTT ATATATGGCT TTAGTCGTTT TTATTTGTTG
CTGGTACCAT TCATGCAGAT GTTTTGTGCC ACAGGACATT TAGTGCAAAC TATCATCCTA GTATTTCAAA TTGACACTTA
ATTTTGTTTT TAACTGTTTT TTGCTTCTGA TGAGTTACAA TTTTATAAAT GAATGTCTTT TAATCCTTAT TGTTGGGGTA
GTCAGGGAAG GTGTCTTCAA TATAAATGTG AAGATATATC AGATAGGTTC CTCTCTTTTT TAAAATAAGC AGTATGATTT
AATATTAACA ATCTTATTTA GATTTTATTT AGA

>Vigan.09G039200.01
ATGCTTCCCT CAAATCTTTC TTTCGTTGAT ATTGCAAACG AAAACCCTAA TTCCATCTTT TCTAATGGGA TTTCTTATTC
TTCTTCTTCT GAATCAGGTA TCTCCAGAGA TTCTATGCAC AAGAGGCGTG CCACTGGTGG CAAGAAGAAG GCCTGGAGGA
AAAAGAGAAA GTATGAGCTT GGTCGCCAGC CTGCTAACAC TAAGCTGTCA AGCAACAAGA CTGTCAGGAG GATCCGTGTT
AGAGGTGGCA ATGTGAAGTG GAGAGCACTG AGATTGGATA CTGGAAACTA CTCTTGGGGA AGTGAAGCTG TAACTCGCAA
GACTCGTATA CTTGATGTGG TATACAACGC CTCAAACAAT GAGCTTGTGC GTACTCAGAC CCTTGTCAAA AGTGCTATTG
TTCAGGTTGA TGCCGCTCCC TTCAAACAGT GGTATCTTCA GCACTATGGT GTTGACATTG GTAGGAAGAA GAAGACAGCT
GCAAAGAAGG ATTCCGCAGA GGAGGGTGAC GCTGCAGCAG CAGAAGAAGC CAAAAAGAGT AACCATGTGC AAAGAAAACT
AGAAAAGCGC CAGAAGGATC GCAAGCTTGA TGCTCACATT GAGGAGCAGT TTGGTGGTGG TCGTTTACTT GCTTGCATTT
CCTCTCGACC TGGTCAATGT GGCAGATCTG ATGGCTACAT TCTGGAAGGT AAAGAGTTGG AATTTTACAT GAAGAAACTC
CAGAAGAAGA AGGGGAAAGG TGCTGCCTGA 

>Vigan.09G039200.01
MLPSNLSFVD IANENPNSIF SNGISYSSSS ESGISRDSMH KRRATGGKKK AWRKKRKYEL GRQPANTKLS SNKTVRRIRV
RGGNVKWRAL RLDTGNYSWG SEAVTRKTRI LDVVYNASNN ELVRTQTLVK SAIVQVDAAP FKQWYLQHYG VDIGRKKKTA
AKKDSAEEGD AAAAEEAKKS NHVQRKLEKR QKDRKLDAHI EEQFGGGRLL ACISSRPGQC GRSDGYILEG KELEFYMKKL
QKKKGKGAA*