GBrowse Details

Vigan.08G351500.01

Basic Information:
Name: Vigan.08G351500.01
Multiple alignment
Variant Information
Position: Chr08:44945513..44948512 (- strand)
Length: 3000
Functional Information:
Description: Similar to Uncharacterized protein. [I1L9K6, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Homeobox domain (IPR001356)
POX domain (IPR006563)
Homeobox KN domain (IPR008422)
Homeodomain-like (IPR009057)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.41,0.83,46.62,44.06,51.07,21.15,15.69,35.06
Arabidopsis thaliana homolog: AT2G35940.1
Automatic updates:
Name: KT031167 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_176 homeodomain/HOMEOBOX transcription factor (Glyma10g10040.2) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:44945513..44945910 (- strand)
Length: 398
Type: three_prime_UTR
Position: Chr08:44945911..44946711 (- strand)
Length: 801
Type: CDS
Position: Chr08:44946814..44946874 (- strand)
Length: 61
Type: CDS
Position: Chr08:44946966..44947339 (- strand)
Length: 374
Type: CDS
Position: Chr08:44947540..44948256 (- strand)
Length: 717
Type: CDS
Position: Chr08:44948257..44948512 (- strand)
Length: 256
Type: five_prime_UTR

>Vigan.08G351500.01 class=Sequence position=Chr08:44945513..44948512 (- strand)
TTTGTTTCTT TCTGTGTTGT GATGCGTTCT TGTGGGATCG TTATCTTAGC TATTTTTTAC TGTATTACGT TGTGTTGTGA
TGTGTTCTTA TTATGGGATT ATTATTATTA TTATTATTAC GGAGCGAAGT TTCTATCTTT ATTTTTATTT TTCTTTTTGG
GATGTGATTG AAAAACATGA AAGTCCGACA CTAACTAGGT TTTGTTTTCG GTTTTTCAGT GTGAATAAGT GACAAAGCAG
AAGAAAGTTT TCTCCAATGG CGACATATTT TCAAAGTAAC CCCAAAATTC AAGCAGGTGC TGACGGTCTT CAAACTCTCG
TACTAATGAA CCCTGACTAT GTCCAATACT CCGACGCGCC GCCGCCACCC CACGGCGGAA ACCACTTGTT TCTCAACTCC
GCCGCCACCG TTGCCAACAA CTCCTCCCTA CTGAATCTCC CTCACGCGCC GTCCCCTCAC ACTCAGCAAT TCGTCGGCGT
GCCTCTCTCC GCAGCAGCGC AGGAGCCGCC GCCGTCCATG CCCCATGACG TCTCCGCCTT GCATGGCTTC CTGCCACGCA
TGCAGTACAA CCTTTGGAAC ACAATTGACC CCAGCACGGC GGCGCGTGAT GCCACACGCG CTTCCCAGGG ACTGTCACTT
AGCCTTCACG GTGAGGAGGT GCGTCCAAGG TCATCCTCCG CCCCTGGGGC CTCCAACGGC GGCGGTATGG CGGGGATTCA
GAGTGTTCTC TTGAGTTCCA AGTTCTTGAG GGTCACGCAA GAACTTCTGG ACGAGATTGT GAATGTTAAC AGCGGAATTA
AGGTTGAACA AGGGAAGCAA AGCTTCGAGA AAACTAAGGC GGTTGGAGAA TCATCAACCG CTGCTAGTGG TGACGGCGGA
GAGGCATGTG GGAAACGTAG CTCTGAACTG TCTACTACAG AGAGACAAGA AATTCAGATG AAGAAAGCAA AGCTAATCAA
CATGCTTGAC GAGGTAATCT CTTTTATTTC TTCTGTATTT GATCAATGAC TGCATAAATA AAACCACAAA ATTTTGATGT
CCTTTTGTTT CCAATTGAAC TCAAAATTCC ATTTTAATCA TTGAGATAAT ATTCTTTCTT CCAAGTAAAA TTTCTTTGTT
TTTATGACAT GGTTTGTAGC ATTGTTTTGT TGATTTGATC TCTGGAATTG AAGGTGGAGC AAAGGTACAG GCAGTACCAC
AACCAGATGC AGATTGTGAC ATCCTCCTTT GAGCAAGTTG CAGGGATTGG TTCTGCGAGG ACGTACACAG CACTTGCATT
GCAAACAATT TCAAAGCAAT TTCGATGTTT GAAGGATGCT ATAACAGGTC AAATCAGAGC TGCAAATAAG AGTTTGGGAG
AAGAGGATTG TTTTGGGGCT AAAGTTGAAG GTTCTAGGCT GAAATACGTG GACCATCATC TACGCCAACA GAGAGCTATT
CAACAGTTGG GTATGATCCA TCACAATGCT TGGAGACCCC AGAGAGGATT GCCAGAGAGA TCGGTTTCTG TCTTACGTGC
TTGGCTCTTT GAACACTTTC TCCACCCGTA AGAACTTTCA AAATTCAATC TTTCAAACTC TTTATTTCCA CTTCCATGGT
TCTTGCTCTT GAAACAAGTT GAGCTTATCT GGTTTCAGCT ACCCCAAGGA CTCCGACAAA CACATGCTTG CAAAACAAAC
AGGGCTTACC AGGAGTCAGG TAACACCACT GCTACTCAAC AACTGTTCAA TTGTGTAAAA GAATGAATAA GATTCAATGA
GAGCGTGTAT GAAGATTGAT TGGAATATTG GAATGGAACA GGTTTCAAAT TGGTTCATAA ATGCTCGAGT TCGGCTTTGG
AAGCCAATGG TGGAGGAAAT GTATTTGGAG GAGATGAAAG AACACGAACT AAATGGAAAT GGGTCTGAGG AGAAATCAAG
CAAGAGTGGT GAAGATCCCG CGATGAAACG AGAGAAACGT CCTACCTCTG AGATTGAATC AAAAGGTTCT AGTTCTAAAC
AAGATGTTTC TAATTCAATA GTTTCAACTT CACCATCAAC ATCAGCACCT GTAGTGGGTA ATGTGAAGAA TCAATCAGGA
TTCAGTTTCA TGGGGTCATC AGAGTTAGAT GGAATCACAC AAGGAAGCCC CAAGAAGCCA AGGAACCCTG AAATCCTACT
CTCTCCAAAT CGTGCTTCTT CAATGAGCAT GGATGTTAAA AGCAATGAGG CCAACAATGA GCAACAGCTT TCAATGGAGG
AGAGACAGAG CAGGGATGGG TACTCTTTCA TGGGGAGCCA AACAAACTTC ACAGGTGGTT TTGGGCAATA CCCAATGGAG
GAAATTGGTA GGTTTGATGC TGAAGAATTC ACACCAAGGT TTTCAGGTAA TGGTGTTTCC CTCACTCTTG GTCTTCCTCA
CTGTGACACA TTGTCAGGAA CACATCAAAC CTTTCTCCCA AACCAGAACA TTCAGCTAGG AAGAGGGTTG GACATTGGTC
AACCGAATCA GTTTGGTGTG TTGAACAATT CCACTTCTCA CTCTTCAGCA GCATTTGAGA GTATCAACAT GCAGAACCCA
AAGAGGTTTG CTGCACAATT GGTACTGGAC TTTGTGGCAT AAACAGGACA TTGAAGGGGA CAGATTATGG TTAGTGTAAA
GAAAGAAGGA ATTTTACTCT AGTATAGGTG TATACCTTGC ATAGAACCAT TTGAGTTCTT AGATATAGCT TGGTGATTTT
AAAAATATAT GCTTACTTGA GTTGTATATT AATTTTGTAA TTTTTGAAAA TGGGATAGAT GGGTTGGTGT CATAAAATTT
CAATTGGTAA AGATAGTATA TCTTTGATTT GAGAGTATAT GTCATGAATT ACCTTTCTTT TTTTAAGTCT TAACCTACTT
TTCTTTGGGT GGATTACATA AATCAAAGAA AAAGGTACAA GTGGAGCAAT ATGGTAGATT GTTATGGATG AAAACTTATA
CTTACCCTTT TCTTTTATAT ATAAAAGTTC CCATTTATCA 

>Vigan.08G351500.01
TTTGTTTCTT TCTGTGTTGT GATGCGTTCT TGTGGGATCG TTATCTTAGC TATTTTTTAC TGTATTACGT TGTGTTGTGA
TGTGTTCTTA TTATGGGATT ATTATTATTA TTATTATTAC GGAGCGAAGT TTCTATCTTT ATTTTTATTT TTCTTTTTGG
GATGTGATTG AAAAACATGA AAGTCCGACA CTAACTAGGT TTTGTTTTCG GTTTTTCAGT GTGAATAAGT GACAAAGCAG
AAGAAAGTTT TCTCCAATGG CGACATATTT TCAAAGTAAC CCCAAAATTC AAGCAGGTGC TGACGGTCTT CAAACTCTCG
TACTAATGAA CCCTGACTAT GTCCAATACT CCGACGCGCC GCCGCCACCC CACGGCGGAA ACCACTTGTT TCTCAACTCC
GCCGCCACCG TTGCCAACAA CTCCTCCCTA CTGAATCTCC CTCACGCGCC GTCCCCTCAC ACTCAGCAAT TCGTCGGCGT
GCCTCTCTCC GCAGCAGCGC AGGAGCCGCC GCCGTCCATG CCCCATGACG TCTCCGCCTT GCATGGCTTC CTGCCACGCA
TGCAGTACAA CCTTTGGAAC ACAATTGACC CCAGCACGGC GGCGCGTGAT GCCACACGCG CTTCCCAGGG ACTGTCACTT
AGCCTTCACG GTGAGGAGGT GCGTCCAAGG TCATCCTCCG CCCCTGGGGC CTCCAACGGC GGCGGTATGG CGGGGATTCA
GAGTGTTCTC TTGAGTTCCA AGTTCTTGAG GGTCACGCAA GAACTTCTGG ACGAGATTGT GAATGTTAAC AGCGGAATTA
AGGTTGAACA AGGGAAGCAA AGCTTCGAGA AAACTAAGGC GGTTGGAGAA TCATCAACCG CTGCTAGTGG TGACGGCGGA
GAGGCATGTG GGAAACGTAG CTCTGAACTG TCTACTACAG AGAGACAAGA AATTCAGATG AAGAAAGCAA AGCTAATCAA
CATGCTTGAC GAGGTGGAGC AAAGGTACAG GCAGTACCAC AACCAGATGC AGATTGTGAC ATCCTCCTTT GAGCAAGTTG
CAGGGATTGG TTCTGCGAGG ACGTACACAG CACTTGCATT GCAAACAATT TCAAAGCAAT TTCGATGTTT GAAGGATGCT
ATAACAGGTC AAATCAGAGC TGCAAATAAG AGTTTGGGAG AAGAGGATTG TTTTGGGGCT AAAGTTGAAG GTTCTAGGCT
GAAATACGTG GACCATCATC TACGCCAACA GAGAGCTATT CAACAGTTGG GTATGATCCA TCACAATGCT TGGAGACCCC
AGAGAGGATT GCCAGAGAGA TCGGTTTCTG TCTTACGTGC TTGGCTCTTT GAACACTTTC TCCACCCCTA CCCCAAGGAC
TCCGACAAAC ACATGCTTGC AAAACAAACA GGGCTTACCA GGAGTCAGGT TTCAAATTGG TTCATAAATG CTCGAGTTCG
GCTTTGGAAG CCAATGGTGG AGGAAATGTA TTTGGAGGAG ATGAAAGAAC ACGAACTAAA TGGAAATGGG TCTGAGGAGA
AATCAAGCAA GAGTGGTGAA GATCCCGCGA TGAAACGAGA GAAACGTCCT ACCTCTGAGA TTGAATCAAA AGGTTCTAGT
TCTAAACAAG ATGTTTCTAA TTCAATAGTT TCAACTTCAC CATCAACATC AGCACCTGTA GTGGGTAATG TGAAGAATCA
ATCAGGATTC AGTTTCATGG GGTCATCAGA GTTAGATGGA ATCACACAAG GAAGCCCCAA GAAGCCAAGG AACCCTGAAA
TCCTACTCTC TCCAAATCGT GCTTCTTCAA TGAGCATGGA TGTTAAAAGC AATGAGGCCA ACAATGAGCA ACAGCTTTCA
ATGGAGGAGA GACAGAGCAG GGATGGGTAC TCTTTCATGG GGAGCCAAAC AAACTTCACA GGTGGTTTTG GGCAATACCC
AATGGAGGAA ATTGGTAGGT TTGATGCTGA AGAATTCACA CCAAGGTTTT CAGGTAATGG TGTTTCCCTC ACTCTTGGTC
TTCCTCACTG TGACACATTG TCAGGAACAC ATCAAACCTT TCTCCCAAAC CAGAACATTC AGCTAGGAAG AGGGTTGGAC
ATTGGTCAAC CGAATCAGTT TGGTGTGTTG AACAATTCCA CTTCTCACTC TTCAGCAGCA TTTGAGAGTA TCAACATGCA
GAACCCAAAG AGGTTTGCTG CACAATTGGT ACTGGACTTT GTGGCATAAA CAGGACATTG AAGGGGACAG ATTATGGTTA
GTGTAAAGAA AGAAGGAATT TTACTCTAGT ATAGGTGTAT ACCTTGCATA GAACCATTTG AGTTCTTAGA TATAGCTTGG
TGATTTTAAA AATATATGCT TACTTGAGTT GTATATTAAT TTTGTAATTT TTGAAAATGG GATAGATGGG TTGGTGTCAT
AAAATTTCAA TTGGTAAAGA TAGTATATCT TTGATTTGAG AGTATATGTC ATGAATTACC TTTCTTTTTT TAAGTCTTAA
CCTACTTTTC TTTGGGTGGA TTACATAAAT CAAAGAAAAA GGTACAAGTG GAGCAATATG GTAGATTGTT ATGGATGAAA
ACTTATACTT ACCCTTTTCT TTTATATATA AAAGTTCCCA TTTATCA

>Vigan.08G351500.01
ATGGCGACAT ATTTTCAAAG TAACCCCAAA ATTCAAGCAG GTGCTGACGG TCTTCAAACT CTCGTACTAA TGAACCCTGA
CTATGTCCAA TACTCCGACG CGCCGCCGCC ACCCCACGGC GGAAACCACT TGTTTCTCAA CTCCGCCGCC ACCGTTGCCA
ACAACTCCTC CCTACTGAAT CTCCCTCACG CGCCGTCCCC TCACACTCAG CAATTCGTCG GCGTGCCTCT CTCCGCAGCA
GCGCAGGAGC CGCCGCCGTC CATGCCCCAT GACGTCTCCG CCTTGCATGG CTTCCTGCCA CGCATGCAGT ACAACCTTTG
GAACACAATT GACCCCAGCA CGGCGGCGCG TGATGCCACA CGCGCTTCCC AGGGACTGTC ACTTAGCCTT CACGGTGAGG
AGGTGCGTCC AAGGTCATCC TCCGCCCCTG GGGCCTCCAA CGGCGGCGGT ATGGCGGGGA TTCAGAGTGT TCTCTTGAGT
TCCAAGTTCT TGAGGGTCAC GCAAGAACTT CTGGACGAGA TTGTGAATGT TAACAGCGGA ATTAAGGTTG AACAAGGGAA
GCAAAGCTTC GAGAAAACTA AGGCGGTTGG AGAATCATCA ACCGCTGCTA GTGGTGACGG CGGAGAGGCA TGTGGGAAAC
GTAGCTCTGA ACTGTCTACT ACAGAGAGAC AAGAAATTCA GATGAAGAAA GCAAAGCTAA TCAACATGCT TGACGAGGTG
GAGCAAAGGT ACAGGCAGTA CCACAACCAG ATGCAGATTG TGACATCCTC CTTTGAGCAA GTTGCAGGGA TTGGTTCTGC
GAGGACGTAC ACAGCACTTG CATTGCAAAC AATTTCAAAG CAATTTCGAT GTTTGAAGGA TGCTATAACA GGTCAAATCA
GAGCTGCAAA TAAGAGTTTG GGAGAAGAGG ATTGTTTTGG GGCTAAAGTT GAAGGTTCTA GGCTGAAATA CGTGGACCAT
CATCTACGCC AACAGAGAGC TATTCAACAG TTGGGTATGA TCCATCACAA TGCTTGGAGA CCCCAGAGAG GATTGCCAGA
GAGATCGGTT TCTGTCTTAC GTGCTTGGCT CTTTGAACAC TTTCTCCACC CCTACCCCAA GGACTCCGAC AAACACATGC
TTGCAAAACA AACAGGGCTT ACCAGGAGTC AGGTTTCAAA TTGGTTCATA AATGCTCGAG TTCGGCTTTG GAAGCCAATG
GTGGAGGAAA TGTATTTGGA GGAGATGAAA GAACACGAAC TAAATGGAAA TGGGTCTGAG GAGAAATCAA GCAAGAGTGG
TGAAGATCCC GCGATGAAAC GAGAGAAACG TCCTACCTCT GAGATTGAAT CAAAAGGTTC TAGTTCTAAA CAAGATGTTT
CTAATTCAAT AGTTTCAACT TCACCATCAA CATCAGCACC TGTAGTGGGT AATGTGAAGA ATCAATCAGG ATTCAGTTTC
ATGGGGTCAT CAGAGTTAGA TGGAATCACA CAAGGAAGCC CCAAGAAGCC AAGGAACCCT GAAATCCTAC TCTCTCCAAA
TCGTGCTTCT TCAATGAGCA TGGATGTTAA AAGCAATGAG GCCAACAATG AGCAACAGCT TTCAATGGAG GAGAGACAGA
GCAGGGATGG GTACTCTTTC ATGGGGAGCC AAACAAACTT CACAGGTGGT TTTGGGCAAT ACCCAATGGA GGAAATTGGT
AGGTTTGATG CTGAAGAATT CACACCAAGG TTTTCAGGTA ATGGTGTTTC CCTCACTCTT GGTCTTCCTC ACTGTGACAC
ATTGTCAGGA ACACATCAAA CCTTTCTCCC AAACCAGAAC ATTCAGCTAG GAAGAGGGTT GGACATTGGT CAACCGAATC
AGTTTGGTGT GTTGAACAAT TCCACTTCTC ACTCTTCAGC AGCATTTGAG AGTATCAACA TGCAGAACCC AAAGAGGTTT
GCTGCACAAT TGGTACTGGA CTTTGTGGCA TAA

>Vigan.08G351500.01
MATYFQSNPK IQAGADGLQT LVLMNPDYVQ YSDAPPPPHG GNHLFLNSAA TVANNSSLLN LPHAPSPHTQ QFVGVPLSAA
AQEPPPSMPH DVSALHGFLP RMQYNLWNTI DPSTAARDAT RASQGLSLSL HGEEVRPRSS SAPGASNGGG MAGIQSVLLS
SKFLRVTQEL LDEIVNVNSG IKVEQGKQSF EKTKAVGESS TAASGDGGEA CGKRSSELST TERQEIQMKK AKLINMLDEV
EQRYRQYHNQ MQIVTSSFEQ VAGIGSARTY TALALQTISK QFRCLKDAIT GQIRAANKSL GEEDCFGAKV EGSRLKYVDH
HLRQQRAIQQ LGMIHHNAWR PQRGLPERSV SVLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM
VEEMYLEEMK EHELNGNGSE EKSSKSGEDP AMKREKRPTS EIESKGSSSK QDVSNSIVST SPSTSAPVVG NVKNQSGFSF
MGSSELDGIT QGSPKKPRNP EILLSPNRAS SMSMDVKSNE ANNEQQLSME ERQSRDGYSF MGSQTNFTGG FGQYPMEEIG
RFDAEEFTPR FSGNGVSLTL GLPHCDTLSG THQTFLPNQN IQLGRGLDIG QPNQFGVLNN STSHSSAAFE SINMQNPKRF
AAQLVLDFVA *