GBrowse Details

Vigan.08G309400.01

Basic Information:
Name: Vigan.08G309400.01
Multiple alignment
Variant Information
Position: Chr08:39663914..39667647 (+ strand)
Length: 3734
Functional Information:
Description: Similar to NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B. [XP_003535969.1, Glycine max]
InterPro: GRIM-19 (IPR009346)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:186.00,100.89,73.65,51.39,103.83,207.41,70.09,54.15
Arabidopsis thaliana homolog: AT1G04630.1
Automatic updates:
Name: NM_001361195 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GRIM-19-like protein (LOC100812908), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:39663914..39663989 (+ strand)
Length: 76
Type: five_prime_UTR
Position: Chr08:39663990..39664441 (+ strand)
Length: 452
Type: CDS
Position: Chr08:39666915..39666986 (+ strand)
Length: 72
Type: CDS
Position: Chr08:39667083..39667227 (+ strand)
Length: 145
Type: CDS
Position: Chr08:39667228..39667647 (+ strand)
Length: 420
Type: three_prime_UTR

>Vigan.08G309400.01 class=Sequence position=Chr08:39663914..39667647 (+ strand)
AAGCAACAAG ATTTAAAATG AAAAATTAGA AAATAAAATT AGAATTTTGA AGTATATAAG AGTGCAGATT GAAATTATGG
AAGTGCAGAT AGAAGCTTGG ACCTATTGTA CGTTGTGGGC TGGGATAAGG TCCAATAAAA CGGATTGCTT TGTAGGACTA
TCCACTTCAG GTTCCGACTC GAATGTAAAA CCCGAATCTC TTTCGGTTCC CCTTTACACA CTGAAACAGA GAGAAGAGAT
TCGCGTGCTT GATTGTTATT ACTGTTTCTG TATTCCACAC AACGAGTGTC GGAAGAGAGG AGATCGGAAA AAGATGACGG
AGGCCTATAT AAGGAACAAG CCAGGCATGG CGAGCGTGAA GGACATGCCG GTTCTCCAGG ACGGTCCACC GCCGGGCGGG
TTCGCACCGG TCCGGTTCGC TCGCCGCATC CCTAACAAGG GCCCAAGCGC TATCGCCATA TTCCTCGCTA CATTCGGAAC
ATTCTCTTGG GGCATGTACC AGGTCGGCCA GGGCAACAAG ATCAGAAGGT TCTTCTCTTC TCTTTTCCAT CGGTTTTTCT
TCTTTTTGAT TTAATTCTCT ATGTTCGAAA TCTTTCTAGC AATTGAAGTT TTTACATTCT GTATGAGGAG TGAATTCCAT
TGTATTCACC TGTTTTATAA TGTAATCCAG GAATCATCTT AGGTTTCCTC TTTCTGTTTT CGTAATATTA TTTCTTTAAT
TTCATGTGTC GTTACTTTTG TTATTCCTTC TCCTGTTGGT GTTTATAGAG AAGCTTATTT GAACAGATGC CATAATCATT
TTGCTTCTTT AGAATGTTTC CGTATCATGA TCAAGGTTTA GCTTATGAGA GAAACTTGTT TAGTTTCTCC TTCTACTGAT
GTTAATGGAT AAACTAGTCC AAACAAAACC TTTTTAGTGT TTTTGTGTCA CTTTATAATT GTGCATCCTA TTGCCAATTA
CATATTCTCA ATTATAATAT TCAGTTATCG TTGGCTATTG TTCTATCTTT TTTATTTGTC CATGATTCTT TAACAGCATC
TATTAATACA GAAATTTATA TTTTTAAATC TTACAATTTG AAGTGTTGTC GACAAATTCT GGGATTTAAT TGAGCATATG
AGCTCGTGAT CTGTTATTCG AGACTATTAT GAATCATTTG ACTTGTAGAT TTAATTGTGG CGTTGGATTA TTACTGTAGG
AATCTGCTTC TTTGCTAGGA ATTTAGATTT GTTTACTGTA ATTGAATTTG AGTGAAATTA TGTTAACTAA TTGTCCCGTT
GTTGAGGATC ATCCTTGCAA TTGACGTTTG TTCATTCTGT AGGAGTACTG ATTCCATTTT GTATTCAACA GTTAGTGTTG
TAGTTGTTAT CGCTGATTTC ATTATATTAT TTATTTATTT CAATTACTTG TGGCTGTTAA ACCATTTTTA CAGCAAGACG
GCTTGGGTTA CTACTTGACC TAATTTTTTA AATCAATAGG TGTTCATAGT TTTAGTGCTT TTCGTAAAGC AATTTAGAAC
ACCTGGAATA ACTTCTATGA AAGTGTTTTT GCCATAAGCA GTGGTCTTCC TTGATTCTCT GGCAAAGTCA ACCAAATGGT
TCACTTCCAC TTTTATAAAG GGAAACCTTA GTAAAATGTT GCACAACTTT ACTTGACGCC AACCTCTTGA TGTAATCATA
CGACCCATTG GTAACCTCCA AATCATATTC TAATTTGAGG TTGGAATGAA AGAACTCTAG ATACAAGCCA TTGGTAACAT
CATCGTATTT ACTTTCGTTC TTATTGAAAG ACTTCTTAGG TCTTCTCCAT TGCTTTATAG ATATAGTCAA TAGTTGTTTT
TCTTTTCCCA TCTACAAGAT GTAATACATG ACCAAGAGGA ACTGTGACTT TGAGAGTAAA ATCCACATTA TTCCAAACGC
GGAGGCGGAA TGATAGGCCT CAGGACTTTG AGAGCAATTG TTAATTTATG AATCATAAAG AGGGATAGAT TTTTCGTGCA
GTGATTTATA TGTTCAATTA TGGTGATAAG TTGTTAATTG TTACTGCTGG AATCTGCATC TTTCCTTGTT CTCAAACTGG
CTACCTTGGA TTGTGCATTT CTTTAGCATA TTTGAATGAA TATTCTGTTA ACTAATGATC CAAACCAAAC ATTTTTGGTT
TCTTTGCTTC CTCTGTGATT TGGTTGTTTC ATTGATTTCC AACTTCTATT TTCTTAACAA CCTGGCTTGA TTATAGCTTA
TATGCAAGCC ATGTATTCGA AAAAGGATTT ATTCAATCTA GTTAGTACGA AATACTTGAG GATCCAATTT TACCGAAAAT
TTGACCATGT AAAATGTTTT CGGTAGAGAT GAGCTTCTTG AATTAAATCA ATACATGAAA TACTTTCCTA AGAAATACTT
TCAGGTGAGA GCATAGAATA CGGGACAGTT GAAAATGTTT TTCCCTTCCT TTGAAGGGTT GTTCCAGTTG ACCAGAAAAA
AAATATTTTA CACTCTTATT AATTTGTTTT AAGAAACTGG ATTGGGTCGA TTCTAAATTT CTCAGCAAAG TAGAAACAAA
GCAGCTTGTA TTTTCCTGTG TAAGTTAATT TTTTATTGGA AAATTGTTTC TCTTTGGTCT TTGTGGGAAA AGGATATGGA
CAGAAGACAA AACTCTCGGT GTTATTTTTC TTAAAAAATT TAAGTTTCTG TTAGGTAACG AGAGGTGAGG TGACCTCCAA
TTTTGATTTG AAAAAAGTAT CAAAAGCACC TACTGTACTA CTCGTAGATT TTGTCCATAA AAATAAATGT ATATTAGTGC
ATATTATTGG ATATTTCTTT CTCACCACGA GTCTCTGATT TTACTGTATT TTATTCTTCG TCTATTATTG GTTTTGGGGA
TTGGTGGGAT GTGATACTGA AAAATAGATA TAGCCGTTCA TGGAAGAATC AGACCACGTA GGTTTGCTTT CAGTTCCTAG
TCAAAAACTT AAACTGATGT ATAATGCTTC ACTTCCTATA GGGCACTGAA GGAAGAAAAA TATGCTGCCC GCCGATCCAT
ACTGCCTGTG CTACAGGCTG AAGAGGATGA GAGGTATTTG AGACGCTTTC ACCTATTTTG TATCAACAGA TAGAGCTACT
ATTGTGCTAA GCATTTTGCA TCTCCATTAT TTTTTTGTTT TCTTCCTAGA TTTGTTAGAG AGTGGCATAA ATACCTCGCG
TATGAGGCAG AAGTGATGAA GGATGTGCCT GGTTGGAAGG TTGGTGAAAG TGTGTACAAT TCTGGGAGAT GGGTGCCCCC
AGCCAGCGGT GAGTTGCGTC CTGATATCTG GTGATGCTTT TTCAGCCATC TCCATCCGAA TTTGTGCTGC TTCTTGCATG
TTCGTTACAT TCTGGTACTT TTGTCCAGTC TCTAAAATAA ATTTGTATCT GGAATATTTG TGACTTTTTT GCGAAATTTT
AAAACAAGAA TGCATTTTGT ATTTGTCCTT CATGTTGGCA ATAACACTTA TCTCCGATGT ATGTCAGTAT ATAAATGCAC
ATTCTTGGCA TTACAAATTG TGCGCTTTTT TCGTAACTTG GGGAAAGAAC AAGTCTCAAA CCCAAAAAGA GAGAAATGGT
GAAATTTTTA ACAGTTTTTA AATAGCTTTG ACGATGATGT AGGGGACTAG AGAATACTCC ATCTTAGCCT GATTTCTAGA
ACAATAAAAC GCAAACTTAA TTGGAGGAAA GAAGGGTTAA TTCCACCATT TCTC

>Vigan.08G309400.01
AAGCAACAAG ATTTAAAATG AAAAATTAGA AAATAAAATT AGAATTTTGA AGTATATAAG AGTGCAGATT GAAATTATGG
AAGTGCAGAT AGAAGCTTGG ACCTATTGTA CGTTGTGGGC TGGGATAAGG TCCAATAAAA CGGATTGCTT TGTAGGACTA
TCCACTTCAG GTTCCGACTC GAATGTAAAA CCCGAATCTC TTTCGGTTCC CCTTTACACA CTGAAACAGA GAGAAGAGAT
TCGCGTGCTT GATTGTTATT ACTGTTTCTG TATTCCACAC AACGAGTGTC GGAAGAGAGG AGATCGGAAA AAGATGACGG
AGGCCTATAT AAGGAACAAG CCAGGCATGG CGAGCGTGAA GGACATGCCG GTTCTCCAGG ACGGTCCACC GCCGGGCGGG
TTCGCACCGG TCCGGTTCGC TCGCCGCATC CCTAACAAGG GCCCAAGCGC TATCGCCATA TTCCTCGCTA CATTCGGAAC
ATTCTCTTGG GGCATGTACC AGGTCGGCCA GGGCAACAAG ATCAGAAGGG CACTGAAGGA AGAAAAATAT GCTGCCCGCC
GATCCATACT GCCTGTGCTA CAGGCTGAAG AGGATGAGAG ATTTGTTAGA GAGTGGCATA AATACCTCGC GTATGAGGCA
GAAGTGATGA AGGATGTGCC TGGTTGGAAG GTTGGTGAAA GTGTGTACAA TTCTGGGAGA TGGGTGCCCC CAGCCAGCGG
TGAGTTGCGT CCTGATATCT GGTGATGCTT TTTCAGCCAT CTCCATCCGA ATTTGTGCTG CTTCTTGCAT GTTCGTTACA
TTCTGGTACT TTTGTCCAGT CTCTAAAATA AATTTGTATC TGGAATATTT GTGACTTTTT TGCGAAATTT TAAAACAAGA
ATGCATTTTG TATTTGTCCT TCATGTTGGC AATAACACTT ATCTCCGATG TATGTCAGTA TATAAATGCA CATTCTTGGC
ATTACAAATT GTGCGCTTTT TTCGTAACTT GGGGAAAGAA CAAGTCTCAA ACCCAAAAAG AGAGAAATGG TGAAATTTTT
AACAGTTTTT AAATAGCTTT GACGATGATG TAGGGGACTA GAGAATACTC CATCTTAGCC TGATTTCTAG AACAATAAAA
CGCAAACTTA ATTGGAGGAA AGAAGGGTTA ATTCCACCAT TTCTC

>Vigan.08G309400.01
ATGGAAGTGC AGATAGAAGC TTGGACCTAT TGTACGTTGT GGGCTGGGAT AAGGTCCAAT AAAACGGATT GCTTTGTAGG
ACTATCCACT TCAGGTTCCG ACTCGAATGT AAAACCCGAA TCTCTTTCGG TTCCCCTTTA CACACTGAAA CAGAGAGAAG
AGATTCGCGT GCTTGATTGT TATTACTGTT TCTGTATTCC ACACAACGAG TGTCGGAAGA GAGGAGATCG GAAAAAGATG
ACGGAGGCCT ATATAAGGAA CAAGCCAGGC ATGGCGAGCG TGAAGGACAT GCCGGTTCTC CAGGACGGTC CACCGCCGGG
CGGGTTCGCA CCGGTCCGGT TCGCTCGCCG CATCCCTAAC AAGGGCCCAA GCGCTATCGC CATATTCCTC GCTACATTCG
GAACATTCTC TTGGGGCATG TACCAGGTCG GCCAGGGCAA CAAGATCAGA AGGGCACTGA AGGAAGAAAA ATATGCTGCC
CGCCGATCCA TACTGCCTGT GCTACAGGCT GAAGAGGATG AGAGATTTGT TAGAGAGTGG CATAAATACC TCGCGTATGA
GGCAGAAGTG ATGAAGGATG TGCCTGGTTG GAAGGTTGGT GAAAGTGTGT ACAATTCTGG GAGATGGGTG CCCCCAGCCA
GCGGTGAGTT GCGTCCTGAT ATCTGGTGA

>Vigan.08G309400.01
MEVQIEAWTY CTLWAGIRSN KTDCFVGLST SGSDSNVKPE SLSVPLYTLK QREEIRVLDC YYCFCIPHNE CRKRGDRKKM
TEAYIRNKPG MASVKDMPVL QDGPPPGGFA PVRFARRIPN KGPSAIAIFL ATFGTFSWGM YQVGQGNKIR RALKEEKYAA
RRSILPVLQA EEDERFVREW HKYLAYEAEV MKDVPGWKVG ESVYNSGRWV PPASGELRPD IW*