GBrowse Details

Vigan.08G308400.01

Basic Information:
Name: Vigan.08G308400.01
Multiple alignment
Variant Information
Position: Chr08:39577987..39584555 (+ strand)
Length: 6569
Functional Information:
Description: Similar to Uncharacterized protein. [I1LAK5, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Uncharacterised protein family UPF0016 (IPR001727)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.70,16.33,20.67,33.09,9.46,9.26,8.06,12.27
Arabidopsis thaliana homolog: AT4G13590.1
Automatic updates:
Name: NM_001354893 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative Ca2+/H+ antiporter (LOC100785052), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:39577987..39578125 (+ strand)
Length: 139
Type: five_prime_UTR
Position: Chr08:39578126..39578246 (+ strand)
Length: 121
Type: CDS
Position: Chr08:39578790..39578952 (+ strand)
Length: 163
Type: CDS
Position: Chr08:39579657..39579840 (+ strand)
Length: 184
Type: CDS
Position: Chr08:39580784..39580831 (+ strand)
Length: 48
Type: CDS
Position: Chr08:39581214..39581310 (+ strand)
Length: 97
Type: CDS
Position: Chr08:39582788..39582951 (+ strand)
Length: 164
Type: CDS
Position: Chr08:39583144..39583209 (+ strand)
Length: 66
Type: CDS
Position: Chr08:39583633..39583683 (+ strand)
Length: 51
Type: CDS
Position: Chr08:39583783..39583887 (+ strand)
Length: 105
Type: CDS
Position: Chr08:39583967..39584032 (+ strand)
Length: 66
Type: CDS
Position: Chr08:39584033..39584555 (+ strand)
Length: 523
Type: three_prime_UTR

>Vigan.08G308400.01 class=Sequence position=Chr08:39577987..39584555 (+ strand)
GTTGCATTGT ATACGTGGCA ACCTTCAAGA ACTCTCTTTC ATGTACCAGC CTTAGCTCAA CTTGATTCCT TCAAAGTTCG
AGTTTGACAG AACCCACTCA ACCCAGAAAT GAAATTGTAG AACCTCTTTC ACAGAAAACA TGAGAGGGTT AGGACCTCAT
GCCCCTTTGG TTTCAAGGGG AAAGCCTCCT CCTTCCTTGG TAGTGGTGGA TGCGTTGCCT TCCTCTTCTC ATTTCACTAG
AACCACCACG CTATACCCAT GTAAGTTCTA ACCAACATCT AAAATGTTTT CTTACACCCC ATCAAAAGTT TTCATTTTTA
TGAATTATTC TCTTTTTTTC TGGTGGTACT TGTTGAATGG GTTTTCTTTA TGTGACAATG AAAAAAATTT GCTTAGATGG
GTCAAGTCCA ATTTGGTGGG TCAGTTCCAT GATTTTATCC CTTTGGGCGT TTGATAAGAA AACCATGTTT TTCCAAGTAA
TTATAATAAC AAATTTAAGA TTTTAACCTG AGGTTTTTAC GTTGTGTTGT AGTTTGAAGT GATGTTGTTT TGTCTTCAAT
GCTATTACTT TTGGTAGTGA AATTGGTGAG ATTATTGCTT AGTGAAAGTA GTTGTAGTTG TAGTTGTATA CGTTTACCTT
TATTCTGATC CTTGAAGTAT GAATCAAATC TTATGAGTGG ATTTTGTGCT CTCTAACTTT TATTAGACAA CGATTAGCTA
CTTAGGGCTT TTCATGCAGA TTATATTGTT TGTGCTTATG TTTTTTTGTT TAGTGGGTGA CATTATGCCT GAATTATATG
TAGTAAGACG CAGACAGAAA TCAGGGCTGA GCTTTGCCCG TGGCACAATT CGAGCCCTAG CATCCAATAT TAGTGGTGTT
GAACCAGGAG ATTATGGAAG CAGTAATGAG AAAGATGGTC ACAATGTCTT TGAAAAGAAT GCCATAGACG ACAGTTCTTC
TAAAGTGTGA GTTCCACAGT TTCACTTGAT TGATTTCATT TGATATGCAA CAGATGGCCA TTTAGACCAT CACACCATGA
GATGAAAGGT AGCTCTAGGA ACTTAGCACA ATGTAATTTT AGTCTTAGAA CTTTCAGTGG TGTAATGTTC ATTTGCTTTT
ATGATTGTGT TCTCCCTTGA AATCTCAGCT TCTATATGTG AAATTAGGTT GTAAACTTGC CATACAGAAA TAAGTTTTGT
TCGAAAAATC TTAGATGATC CTCTGCTTCA TATTGCATCA AATTAAAAGC TTGGGTATGT GATAATATTT TTTTGAGGAA
ATTGCATTCC TTTGTGTAGT ATAACACTTA TCGAATGCTC ATACCTACTT AGCCTGATGA ATCTATTAAA GTATGAAATA
TATTCCTCTT GCAGATGAGA TCTAAAAGAT TTGTACTAAA TTAGGTAAAA GTTTGAAGAG AAAATTGGCA GTATTCATAT
CATCATTTAA AAGATTAGTT ATTTAAGTCA GGCATGTGGT TGCTTTCAAA GGGAAAAAAT TCTCCAATTT TTTTAGCTGA
TTGACATTAG CGTCTACATC CACTGTTTAG TTTTGTTGAA TGAATTAACA TGTCACTGAA ATATTTCCTG TTGCTCTTTT
AAGTATACTA TTTATGTGAT TGTTCTTGTG ACTGACAATT CTAATGTACA TATATTTTAT GGTTTGGCAG TGTGAAGCCT
CCTAATCAAA TCCCTTATCT TCTCTCTATA GCTTTTGTGC TGTTGGGGTG TGCTTTTGTC TTTTCACTAA TTGCCTTTGT
CAAAGGAGGA CCTTCATCAG TTTTAGCAGC AGTTGCAAAA TCAGGATTCA CTGCTGCATT TACATTGATA TTTGTTTCTG
AGATTGGAGA CAAGGTATTT AACTATTACT GTTATAAAAT AACTATAAAT AATTTTTATA AATGTATTGT AGGTAGGTTT
TATTTAGTTT GTAGGTATCT ATTTTATTAT AGGGAGTTAT TCTAGTTTTA AAAAAATGGT TACTTTAATA ATAAAATGGT
AAGAATTTGT ACTCATAGGA GAAAATCTTT ATTAATGTTA TAGATAAAAG CTATTTTTTT GAGATATTAT TTTGTTTTAG
ATTTTATTAG TTTTAATATT ACAATTTTCG TATAACTATT GAAAATGGCT TTTATAAATT AGTTGAAAAT ATTGAAGGTA
TTTTTTTTAC ATTTACGATA TTTTTTTAAT CTAAATTTTT TATTGATAAA AAAATTGAAA AAATATTAAG TGAATATGAA
GCAAAAGGAA TTGAAAAAGA GAATTGAAGT TAATTAATAG AGATGGTCAA ACTTTTCAAC TTTCAAAGAT AAAATACTTA
TTTAAATGAA TTAATATTTT TTGTTAAACA ATTATTATCT TATTTATTCA TATTTGTAAT AACTAATATA CTTTTTTAGA
GTATAAAGCG AGAGAATATT ATGATTTTGA TAACAAATAA AAAAAATAAT ACTTTTGTAA GATAAACAAT ATACATTGTG
TTGTTAGAAG TCTCACATCG ATTAGAGATA AGAACAATTT AGAGTATATA TATGGTTCTA GACCTCATCT TACAAACAGA
TTTTGTGGAG GAGTTGAGTT ACGCTTAAAG TCCACTTAAT TTAGAGTATA TATCTAGATG CATATCTCAC CTTACAACTT
TATTTAGATT TTTTACTATT ATTGCATTGC TTTTTACCCT ATGGATTTCT ATAATCATGA CAAGTACAGG TTTAGTAGTG
TTCTAGTCTT TTATTAAACA TTCGTTATCC TTGTATGTAT TCATGAACCT AAAGTTGGCA TTTATTCTTT TGACCAGACA
TTCTTTATTG CTGCACTCTT GGCAATGCAA TTTGAAAAGG GATTGGTGAG TCTTCTGACT TCTTTTCTTG ATAATTTCTC
TCCCCTCCCC CTCTCCAGCT TTTATTGCCA TCAAATCCAT CATTGATATA ATATTATCTA GTTTTCTTTT TTGTTGGCTT
ATATACTCCT AATTTTTAGA ATTGGAGTTA TTCTTCTCTC TATGGTTTAT TTCCTCTCTG TTCAACAAAT TCTTCTGTTT
CTGGTATATT ATTACATGTC TTTACTCTGT TTTATTGTAA AAGGCTAGAC AAACAATTTT ACTCAAATAC GAGTTCTTAA
CTTGTGTAGC AGTTTCTTCC TACACACACT AATTAATTGA TTATCAAGCA GTGTAATTTA CATTTTGAAA CATTTTATAT
TCAACTGAGA TTTTATGTAT TGATCAGGTC CTATTGGGTT CAATGGGTGC TCTTGGACTC ATGTCAATCC TATCTGTTGT
AATTGGCCGA ATCTTTCAAT CAGTGCCTGC TCAGTTTCAG ACAAGTAAGT TGTAGCATAT GGTATTTCTT GTACTTTTCA
GATTTAGCAC ATTTTAGCAT GTCTTTCTAG TAAAGGAATT TGACTCAGCA TTTTAGGCAA TGCATTCTGT TCTGAAGTAC
TGATTTATTG TAATTTGTTT GGTAAACACA GATTAAAGTT TCATAATGAA TTGGTAGTGT GTATGAAGTG GAGTAAGAAA
ATTACTATAT ATTATATCTT ATGCTTTTCT GAAAATTTTC ATAAGTTTTA TAGTTTAACT AGAACTAGGG AGTGGTTTTT
GTTATTATTT TCTTTTTCAC ACTGTGGCTT GCTTTAACTT CTCCAATTAT ATCCACATAT TTGTCTCTTG TTTTAAATCT
GTTTTGATGT ACAGCAGTCA GTACCAAATA GAATTAACTT CCTAAAATTA GGCTTCTCAT GGAAAGAGTT CCATCTGGTT
GTGCACACTA CACATTGTTT ATGACTTTGA ATGCTCTTTC CAAACTGTCA TTATAATTCA AGGAGGTAAA GTTCAATTGG
TCGAGCAGTG CGTGTGAGTT GTTGTAAAGC CTCTGGTACC TGTGTCAAGT CGAATGAATA AGTAAAAAAC TGGCATTATA
ATATATTTTA AAGAAAAAGA AAATTGCTGC TGATACAGTA CAGAACCACC TTTTTCACTG TTCTTATTTT CAATCAAAAT
ATGATGCAAT TTTCCCTTTG CACCTACTTG GGCAAGTAAG AAAGCCTCTT GATTTGCATT GTTAAATTGA AAGCATTCCC
TTGGCACATA ATTATGCCAT GTCCACATGC ATGCTAACAT CTGTCTCCCA CTCTCCCTTC ACAATTGAGA TTGGATGGAT
CATGTTGGAA ATGGAAATGA TGGCAGTAGA AATTAGAGCG TTGGAAAACT GTTAAGATCT TCCACGTTCT CTTAATATGG
CCAGAGTATT CCCTATAAGA CTTGGGTAAT CCTCTGTTTT TGACTAGCTT TCAAGAATGA ACTTGGCTCA GTTAATTTCT
TTCAGAATCA TTAGGAATGT ATGTAGAATT AGCCATTGGG AACATTACGC TGATTGAAAA TAATCAATTT TTTTGTTATT
ACAATATTAA TAATAAGTTG TTTTAAATCT TCTTAGACTG GAATGCAAGT TACAATTACC TTCTTCAACA TTGATATAAA
CAGACCTGCC AAGTTGGTCC TTCTGAAGTT CCACTATAAG AGAGCTTAAA TTTTATTGAT CTGCAATAAG TAGCTTTCGG
GTTTTTGCAG TGTATCTCTC TGTTTTCATT ATTAACTGCA CTTTTTACAT CAGATAGAAA TATCTGAAGT TTGTTTTTCA
TAATTTTCTT TCGTCTTTGT CCTACTTTAA TTCAACACTT TTACTTTCAG GTAATCTCGG TTCTGTAGTA TTTAATTCTC
TTTTCACCCT GGGAGAGAGT TGATCTAGAT CATTTGTTAT GCTAGTAACT GATGTTTCTG CTTTATGTGG TCTACCTACA
GCCGTGCCAA TTGGAGAATA TGCAGCAGTA ACCCTTCTTT TGTTTTTCGG CCTAAAAGCA ATAAAAGATG CATGGGATCT
TCCATCTGAT GTGGTTAAGA AAGGTGATAG CAGCAGTCCC GAACTTGATG AACTTGCTGA AGCAGAGGAG CTTGTGAAAG
AGAAGGTTAG AATAGAAACG CATGGCTAAC AGTCCTGAAT ATTTGTGCAC ATGTAAACAT TTTGGTTAAG TTTTTATGCT
ACACAGCTCA GTAACATATC CAAGGCCGGC AACATTTGGT TACATTATTC TACCTTCAAA TTTGCAATTC AACTGTCATT
TATACCCTTT AACCATGTCT TTCTGAATTA TCTTCAGGTA TCAAAAAAAC TTTCAAATCC TCTAGAGATT ATATGGAAGT
CGTTCAGCCT CGTATTTTTT GCTGTAAGGC TCCTCTTTAT CCTGTTTTAT CGAGGAACAA TTTAGCATAA ATTTTTTATT
GTAAAATCAC CACTATAATG AAACAATTGT ATCGGAAGTC CCACATCTAC TAGAGATAAG ACCAATTCAT AGTTTATAAG
TGGGTGCAAA CCTCACTCTA CAAGTTGGTT TTGTGGGGTT GAGTTAGACT TAAAGTTCAC TTCTAACATG GTATAGTACA
TTGTGAAAAT CTTACTGTAT GTTGCATTTG CTCAAAATGT TCCCCCTGAT TTCCATGAAT GCAGACAACC TGAAATTACT
TTTTTCGCCT GAATTCTGAC TCTATATGTT ATTGGCACTA GGTAATGATT AATCAACACT TAATTTATAG CCGGAAGCAA
TTGTGTTATC CAGCATGAAT TTAATGTAGT TACTGGGATT ATGTAGGAAT GGGGAGATCG CTCTATGCTT GCAACTATTG
CACTAGGAGC TGCTCAGGTG CACTATTAAA TTCTGTGATG ACTCAACACT TTCTGCTTTA TATATATATG TATATGTGTG
TGTGTATTAA GTTCAATAAT ATCTTATTTG TTTCAGTCTC CTTGGGGTGT GGCAAGTGGA GCCATTGCTG GACACCTAGT
CGCAACAACT ATTGCCATTC TTGGAGGAGC CTTCCTTGCT AACTACATTT CTGAAAAACT GGTAAAAGTC ATAACTTGAT
TGAACATTGA ATGCTTGAAT TTGTAGTTTG ATATCTAATA ATGTAACTTA CTTTCATCAG GTTGGCTACG TGGGTGGAGG
GCTGTTTCTA ATTTTTGCTG TGGCCACCTT TTTTGGGGTT TTCTGATTCA TTGCTTTTCG GTGTGTAATC TATCATTCAT
GGAGTTGGAA GGAATAAGAC ATACTCATAA CACAGAAAGA TTGCTGAGAG AACTGAGAAA AGCTCATATT TTAACTTTGT
TAAATTTCTT TAGCAGACAT TAGGAGCAAA TTGCTGACAT TGGTAGAGAA TAAGAAGCAT GAAATGTGCC ATTAGAGTGA
GGTACGAAGA GAAACTTGTG CAATTCTTTC TGGAGACTAC CTTTTGTGGG GTTGTGCTTA TTTGTTGTAT TAATAAAAAT
AGTAGGAGTG TGCTGATTTG TTGTATTAAT AAAACTACAT CACATTTACT TTTATTTTTT TGAATTACAT CCACCAAGGA
AAGCATATTG GTGGTCGAAA GAGGAGTAAG ATATTAATAT TTAAGTTTAC CATATGTTTT TTGTTTCCTC TTCTAAGCTC
AAGAAGGATG AGGAGGGATT TTATAAGTCA TAATTAATTA TTACATGGTG AATCATGTGG TTAATTTGTT GCCACTTAAT
AAATGAAGC

>Vigan.08G308400.01
GTTGCATTGT ATACGTGGCA ACCTTCAAGA ACTCTCTTTC ATGTACCAGC CTTAGCTCAA CTTGATTCCT TCAAAGTTCG
AGTTTGACAG AACCCACTCA ACCCAGAAAT GAAATTGTAG AACCTCTTTC ACAGAAAACA TGAGAGGGTT AGGACCTCAT
GCCCCTTTGG TTTCAAGGGG AAAGCCTCCT CCTTCCTTGG TAGTGGTGGA TGCGTTGCCT TCCTCTTCTC ATTTCACTAG
AACCACCACG CTATACCCAT TAAGACGCAG ACAGAAATCA GGGCTGAGCT TTGCCCGTGG CACAATTCGA GCCCTAGCAT
CCAATATTAG TGGTGTTGAA CCAGGAGATT ATGGAAGCAG TAATGAGAAA GATGGTCACA ATGTCTTTGA AAAGAATGCC
ATAGACGACA GTTCTTCTAA AGTTGTGAAG CCTCCTAATC AAATCCCTTA TCTTCTCTCT ATAGCTTTTG TGCTGTTGGG
GTGTGCTTTT GTCTTTTCAC TAATTGCCTT TGTCAAAGGA GGACCTTCAT CAGTTTTAGC AGCAGTTGCA AAATCAGGAT
TCACTGCTGC ATTTACATTG ATATTTGTTT CTGAGATTGG AGACAAGACA TTCTTTATTG CTGCACTCTT GGCAATGCAA
TTTGAAAAGG GATTGGTCCT ATTGGGTTCA ATGGGTGCTC TTGGACTCAT GTCAATCCTA TCTGTTGTAA TTGGCCGAAT
CTTTCAATCA GTGCCTGCTC AGTTTCAGAC AACCGTGCCA ATTGGAGAAT ATGCAGCAGT AACCCTTCTT TTGTTTTTCG
GCCTAAAAGC AATAAAAGAT GCATGGGATC TTCCATCTGA TGTGGTTAAG AAAGGTGATA GCAGCAGTCC CGAACTTGAT
GAACTTGCTG AAGCAGAGGA GCTTGTGAAA GAGAAGGTAT CAAAAAAACT TTCAAATCCT CTAGAGATTA TATGGAAGTC
GTTCAGCCTC GTATTTTTTG CTGAATGGGG AGATCGCTCT ATGCTTGCAA CTATTGCACT AGGAGCTGCT CAGTCTCCTT
GGGGTGTGGC AAGTGGAGCC ATTGCTGGAC ACCTAGTCGC AACAACTATT GCCATTCTTG GAGGAGCCTT CCTTGCTAAC
TACATTTCTG AAAAACTGGT TGGCTACGTG GGTGGAGGGC TGTTTCTAAT TTTTGCTGTG GCCACCTTTT TTGGGGTTTT
CTGATTCATT GCTTTTCGGT GTGTAATCTA TCATTCATGG AGTTGGAAGG AATAAGACAT ACTCATAACA CAGAAAGATT
GCTGAGAGAA CTGAGAAAAG CTCATATTTT AACTTTGTTA AATTTCTTTA GCAGACATTA GGAGCAAATT GCTGACATTG
GTAGAGAATA AGAAGCATGA AATGTGCCAT TAGAGTGAGG TACGAAGAGA AACTTGTGCA ATTCTTTCTG GAGACTACCT
TTTGTGGGGT TGTGCTTATT TGTTGTATTA ATAAAAATAG TAGGAGTGTG CTGATTTGTT GTATTAATAA AACTACATCA
CATTTACTTT TATTTTTTTG AATTACATCC ACCAAGGAAA GCATATTGGT GGTCGAAAGA GGAGTAAGAT ATTAATATTT
AAGTTTACCA TATGTTTTTT GTTTCCTCTT CTAAGCTCAA GAAGGATGAG GAGGGATTTT ATAAGTCATA ATTAATTATT
ACATGGTGAA TCATGTGGTT AATTTGTTGC CACTTAATAA ATGAAGC

>Vigan.08G308400.01
ATGAGAGGGT TAGGACCTCA TGCCCCTTTG GTTTCAAGGG GAAAGCCTCC TCCTTCCTTG GTAGTGGTGG ATGCGTTGCC
TTCCTCTTCT CATTTCACTA GAACCACCAC GCTATACCCA TTAAGACGCA GACAGAAATC AGGGCTGAGC TTTGCCCGTG
GCACAATTCG AGCCCTAGCA TCCAATATTA GTGGTGTTGA ACCAGGAGAT TATGGAAGCA GTAATGAGAA AGATGGTCAC
AATGTCTTTG AAAAGAATGC CATAGACGAC AGTTCTTCTA AAGTTGTGAA GCCTCCTAAT CAAATCCCTT ATCTTCTCTC
TATAGCTTTT GTGCTGTTGG GGTGTGCTTT TGTCTTTTCA CTAATTGCCT TTGTCAAAGG AGGACCTTCA TCAGTTTTAG
CAGCAGTTGC AAAATCAGGA TTCACTGCTG CATTTACATT GATATTTGTT TCTGAGATTG GAGACAAGAC ATTCTTTATT
GCTGCACTCT TGGCAATGCA ATTTGAAAAG GGATTGGTCC TATTGGGTTC AATGGGTGCT CTTGGACTCA TGTCAATCCT
ATCTGTTGTA ATTGGCCGAA TCTTTCAATC AGTGCCTGCT CAGTTTCAGA CAACCGTGCC AATTGGAGAA TATGCAGCAG
TAACCCTTCT TTTGTTTTTC GGCCTAAAAG CAATAAAAGA TGCATGGGAT CTTCCATCTG ATGTGGTTAA GAAAGGTGAT
AGCAGCAGTC CCGAACTTGA TGAACTTGCT GAAGCAGAGG AGCTTGTGAA AGAGAAGGTA TCAAAAAAAC TTTCAAATCC
TCTAGAGATT ATATGGAAGT CGTTCAGCCT CGTATTTTTT GCTGAATGGG GAGATCGCTC TATGCTTGCA ACTATTGCAC
TAGGAGCTGC TCAGTCTCCT TGGGGTGTGG CAAGTGGAGC CATTGCTGGA CACCTAGTCG CAACAACTAT TGCCATTCTT
GGAGGAGCCT TCCTTGCTAA CTACATTTCT GAAAAACTGG TTGGCTACGT GGGTGGAGGG CTGTTTCTAA TTTTTGCTGT
GGCCACCTTT TTTGGGGTTT TCTGA

>Vigan.08G308400.01
MRGLGPHAPL VSRGKPPPSL VVVDALPSSS HFTRTTTLYP LRRRQKSGLS FARGTIRALA SNISGVEPGD YGSSNEKDGH
NVFEKNAIDD SSSKVVKPPN QIPYLLSIAF VLLGCAFVFS LIAFVKGGPS SVLAAVAKSG FTAAFTLIFV SEIGDKTFFI
AALLAMQFEK GLVLLGSMGA LGLMSILSVV IGRIFQSVPA QFQTTVPIGE YAAVTLLLFF GLKAIKDAWD LPSDVVKKGD
SSSPELDELA EAEELVKEKV SKKLSNPLEI IWKSFSLVFF AEWGDRSMLA TIALGAAQSP WGVASGAIAG HLVATTIAIL
GGAFLANYIS EKLVGYVGGG LFLIFAVATF FGVF*