GBrowse Details

Vigan.08G203400.01

Basic Information:
Name: Vigan.08G203400.01
Multiple alignment
Variant Information
Position: Chr08:18193359..18195646 (+ strand)
Length: 2288
Functional Information:
Description: Similar to Lesion inducing protein. [U5TZH0, Phaseolus vulgaris]
InterPro: HR-like lesion-inducer (IPR008637)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:27.69,31.97,84.79,35.13,65.18,92.21,149.26,53.79
Arabidopsis thaliana homolog: AT4G14420.1
Automatic updates:
Name: NM_001248064 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500227 (LOC100500227), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250663 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative HR-like lesion-inducing protein (LOC100305592), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:18193359..18193470 (+ strand)
Length: 112
Type: five_prime_UTR
Position: Chr08:18193471..18193538 (+ strand)
Length: 68
Type: CDS
Position: Chr08:18194295..18194409 (+ strand)
Length: 115
Type: CDS
Position: Chr08:18194672..18194761 (+ strand)
Length: 90
Type: CDS
Position: Chr08:18194873..18194971 (+ strand)
Length: 99
Type: CDS
Position: Chr08:18195070..18195168 (+ strand)
Length: 99
Type: CDS
Position: Chr08:18195169..18195646 (+ strand)
Length: 478
Type: three_prime_UTR

>Vigan.08G203400.01 class=Sequence position=Chr08:18193359..18195646 (+ strand)
AAATCTGTTC TTTTTCTTGC TTTTTCTGTC CGAGGAAAAG TAGAAGAGAA ACACAGTACC CTAGATTTGC CCTTCTCTGC
TTCGGAAGAA AGTGAAACAG AACAAAATTG CAATGGCTTT CGCTTCTTTC CTTGGCAGAG TTCTCTTCGC TTCCGTCTTT
ATACTCTCTG CTTACCAAGA GTTAGTACTC TTTTCACTTC TTTCATAAAT ATTTCCTCTG TTGATTTGTA CCATAAGATG
TCGTTTCTGT CATTTTAATT CAAGAATGAA GTAGTAAATG TTTGTGGATT TTTTGTATGT TTGGTTCATA GATTCAGTTA
TTTACATTCT GCAGTAGTTG GATCCGTAAT GCTTAAGGTT TGGAACCGTT TCTCTGAGTA AAGTAGCCTC GTAGATCTGC
GTTTACTTTT TGTCTTTTGT TCTATTTAGA TTTCGAAAGC GTTACTTACT TAGATTTCCT GTTTTGACTT TGATGGACCG
TGTTAATAAG TTTATACTAA GATTTGGTAG AAGTGCGAGA AACTCGATCC TATTTTTGCA TTTGAATATT GTTAATTGTG
AAATTATCCA TAAGTTCTTG TCTAGTCTGC ATATTTGCAT TTTCGGATTA ATTTTTATGG TAAAATATGG TATAGTTGTC
GTTATGTTTG AAAATTACTA TGTTTTTCTC TGTTTATGTG CAATTCTGGG TTGACTTTAT CGCGTTTTTA TTCTTCCTGA
ATTGGGTTAC TTTGAATTAT TGAGTATGAC TTCATTATTG GATAACTGTG CTTGACTTGG AAATTATTCA TTGTGATTTT
GGTGGGGATG GCGGAGTTGG TTGCTAGTAC TATATTATTC ATGACCGTTC TTTTTGATAA AAGTATATGT GGTTCATCCC
CTCTTTTTTG TTGCTGAAGT GAAGTTTCTT TTTTACTCGG TCGTTCTTTA ATATAGATTT AATGAGTTTG GAGTTGATGG
TGGGCCTGCA GCGAAAGCAC TCAGACCAAA GTTTGATGCA TTTACACATC GCGTGCATTC TCAAGTTGGC TTTCAACTCC
CACAGATTGA TGTTAGTTTC TCTTCTTTCT CTATCATGTG TATCTTTTCT GGAAAATTAT GTCTGAGCAT CATGTCTTCA
TTTCAAAGTA ATTGGAGATT AATTAAATAC TATAATAAAT ATCTATTTAA TACTATCTCA TAGAACTTGC AATATATGTT
GAACGAGGAT TGTACCTTTA TCCTTCAGGC TCATATTGTA CTTTATATCT CGAATGTATA TTATATTATC TTGTATGGTA
GAATTTCTCT GATATGGTTG ATGTCCTGAG CAGACGCAAA TTTTAATTGC TGGGGCTATT GCTCTCAAGG GCCTTGGAGG
AGTTCTTTTC ATATTTGGCA GCTCTTTCGG AGCTCTCCTT CTGGTTTGTA TTCAAATTTT CCCTAATAAA TTGAATTTCA
TATTCTTCTG ACATGCTTCT CTTTTTTTTT TCCTAGTTTT GACTATTTAT TTAATTTATT TATTTTGGCT GTAGCTCCTG
CATCAGCTTA TTGCTACTCC TATCCACTAT GATTTTTACA ATTATGAGAG CGAGGACAAA GAATTTACTC AACTTTTCAT
CAAATTTACA CAGGTCAGAG ACGTGACTTT TTTAAAAAAC TTTATTTTCA ATACAATATT CCCAGATGTA TTTTTACATT
TGTTCTCTAA ATATAATATA ATTCCTTGTA GAATATGGCT CTCTTTGGGG CTCTGTTGTT TTTCATCGGC ATGAAGAACT
CCATCCCTAA AAGGCAACAC AAGAAGGCAC CGAAAACAAA AACCTATTAG TACCAGCAGC ATTGGAGGAC CCCGTTTCAA
GGAGGGGATG CTGTTGGCTC TTAATCATAT CCTCACAAAT GTACCAGGAT TTGGGTTGGA TACTTCTCTG GTTCAGAATC
AGTCTTCCTC TCCCTTTGAG TTTTGTAGTT TTGGCTTCAC TTGGATTAAA TTATTGGCTA TTATTTTGTA TGATCTTGTC
ATCACGGCTT TAGGAACTAT CTTCCAGTTA GACTTGTCTG TTAAAAATGA AAACAAAAGG ATGAGAAACC TTGGCTCTTG
AACTTCAGAA TGCCAATTTC ATTCTGTTCT ATCTTTCTTG ATGTAAGGTC TTCAAAGCCT GGCATTGGAA GTTATGTAAC
TTAACTGGAG TTATCCACTT CAGCCATGAA TTTGTGTGCC CCATCTGATT CTTGTGCTCA TTTTATTTTT ACCACCTACC
TGTTATTTTT CACTTCCAAA ACAAACTTTA AATGTGTTGG AATCTAAC

>Vigan.08G203400.01
AAATCTGTTC TTTTTCTTGC TTTTTCTGTC CGAGGAAAAG TAGAAGAGAA ACACAGTACC CTAGATTTGC CCTTCTCTGC
TTCGGAAGAA AGTGAAACAG AACAAAATTG CAATGGCTTT CGCTTCTTTC CTTGGCAGAG TTCTCTTCGC TTCCGTCTTT
ATACTCTCTG CTTACCAAGA ATTTAATGAG TTTGGAGTTG ATGGTGGGCC TGCAGCGAAA GCACTCAGAC CAAAGTTTGA
TGCATTTACA CATCGCGTGC ATTCTCAAGT TGGCTTTCAA CTCCCACAGA TTGATACGCA AATTTTAATT GCTGGGGCTA
TTGCTCTCAA GGGCCTTGGA GGAGTTCTTT TCATATTTGG CAGCTCTTTC GGAGCTCTCC TTCTGCTCCT GCATCAGCTT
ATTGCTACTC CTATCCACTA TGATTTTTAC AATTATGAGA GCGAGGACAA AGAATTTACT CAACTTTTCA TCAAATTTAC
ACAGAATATG GCTCTCTTTG GGGCTCTGTT GTTTTTCATC GGCATGAAGA ACTCCATCCC TAAAAGGCAA CACAAGAAGG
CACCGAAAAC AAAAACCTAT TAGTACCAGC AGCATTGGAG GACCCCGTTT CAAGGAGGGG ATGCTGTTGG CTCTTAATCA
TATCCTCACA AATGTACCAG GATTTGGGTT GGATACTTCT CTGGTTCAGA ATCAGTCTTC CTCTCCCTTT GAGTTTTGTA
GTTTTGGCTT CACTTGGATT AAATTATTGG CTATTATTTT GTATGATCTT GTCATCACGG CTTTAGGAAC TATCTTCCAG
TTAGACTTGT CTGTTAAAAA TGAAAACAAA AGGATGAGAA ACCTTGGCTC TTGAACTTCA GAATGCCAAT TTCATTCTGT
TCTATCTTTC TTGATGTAAG GTCTTCAAAG CCTGGCATTG GAAGTTATGT AACTTAACTG GAGTTATCCA CTTCAGCCAT
GAATTTGTGT GCCCCATCTG ATTCTTGTGC TCATTTTATT TTTACCACCT ACCTGTTATT TTTCACTTCC AAAACAAACT
TTAAATGTGT TGGAATCTAA C

>Vigan.08G203400.01
ATGGCTTTCG CTTCTTTCCT TGGCAGAGTT CTCTTCGCTT CCGTCTTTAT ACTCTCTGCT TACCAAGAAT TTAATGAGTT
TGGAGTTGAT GGTGGGCCTG CAGCGAAAGC ACTCAGACCA AAGTTTGATG CATTTACACA TCGCGTGCAT TCTCAAGTTG
GCTTTCAACT CCCACAGATT GATACGCAAA TTTTAATTGC TGGGGCTATT GCTCTCAAGG GCCTTGGAGG AGTTCTTTTC
ATATTTGGCA GCTCTTTCGG AGCTCTCCTT CTGCTCCTGC ATCAGCTTAT TGCTACTCCT ATCCACTATG ATTTTTACAA
TTATGAGAGC GAGGACAAAG AATTTACTCA ACTTTTCATC AAATTTACAC AGAATATGGC TCTCTTTGGG GCTCTGTTGT
TTTTCATCGG CATGAAGAAC TCCATCCCTA AAAGGCAACA CAAGAAGGCA CCGAAAACAA AAACCTATTA G

>Vigan.08G203400.01
MAFASFLGRV LFASVFILSA YQEFNEFGVD GGPAAKALRP KFDAFTHRVH SQVGFQLPQI DTQILIAGAI ALKGLGGVLF
IFGSSFGALL LLLHQLIATP IHYDFYNYES EDKEFTQLFI KFTQNMALFG ALLFFIGMKN SIPKRQHKKA PKTKTY*