GBrowse Details

Vigan.08G134300.01

Basic Information:
Name: Vigan.08G134300.01
Multiple alignment
Variant Information
Position: Chr08:11816028..11818963 (+ strand)
Length: 2936
Functional Information:
Description: Similar to Uncharacterized protein. [I1LCC7, Glycine max]
InterPro: Uncharacterised protein family UPF0497, trans-membrane plant (IPR006702)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.21,2.36,11.02,5.00,15.86,11.03,18.86,10.72
Arabidopsis thaliana homolog: AT3G23200.1
Automatic updates:
Name: BT096394 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-9D20 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:11816028..11816333 (+ strand)
Length: 306
Type: five_prime_UTR
Position: Chr08:11816334..11816464 (+ strand)
Length: 131
Type: CDS
Position: Chr08:11818148..11818280 (+ strand)
Length: 133
Type: CDS
Position: Chr08:11818367..11818561 (+ strand)
Length: 195
Type: CDS
Position: Chr08:11818562..11818963 (+ strand)
Length: 402
Type: three_prime_UTR

>Vigan.08G134300.01 class=Sequence position=Chr08:11816028..11818963 (+ strand)
AAGAGAAGAA AGAGAAATGC ATTTACAAGC AACCGAGGCT GTTCTGTTTG GTCACACGTT TGACTATTGC CATTTGCCAA
CCTTAACATC CTTGCTTTCC TTATCTAATC CAACTTCTTC GTTTTCCTGT CCTGTTTTGC CCGTGACAGG CAATCTTCTC
ACCCAGATTT CAATTTCCCT TCTTCCTTTC TGGGTCTTTT TCTGTTGCCC TTAAAATTCT TAACTTTCTT TTTTCTTAAT
TTTGGGTCAA ATATGAAGAT GGGTGTTCAT CCTTAGCCAT TGAGAATCCT AGATTTGGAG GGAAAGATGA GAGATTTCCC
TGGAACACCG GGCACTGTCC TTGGTTTGAC TCTAAGGATA TCACAGTTCG TATTTGCTGC TGGATCAATT GCTTCGATGG
CTACCACTTC CAGTTTCTTT AATTTTACGG CCTTTTGGTA ATAAGTTATA CATTTCGCCT TTCTGAAACT TTTTCTTGCA
TTATCTGTTT TGGTGTGACT TTGTTGCAGT ATGATGGTAT CCTTGAAACA CATTACTTGC GTGTTAGCCA ACCGTTTGTC
GTTGATTCGG CTTCATATTT GATTTTGTGC ATGTGATATG AGTTAATACA GTTTCTTCAA GCAAGTTTAG CACTTTGCCT
GTTTTAGTCC TTACTTGAGT GAATGTGTAG TGGAAATTTG TCATTGTTGT TGGGAAATGG GATTTGGGAA ATCTGATATT
CATGAAGCTT TCTAATCACA ATTTTGACCT GACTGAGGGT ATGCTAGGAA ACAGAGGATT CGAATGGGAT GTAAAAGCTA
ACTTTTAGTT TATAAAATCA CATCCAAAAT GTGGAACCAG ACAAGTTCTT AGCTTTTAAA AACCACATCT GAAACAGGAA
AGCAAACACG TTATGAATCA AACTTGTGTG GAAATTCGCT TATCAGTTGT TTACCATTTA ACGGAAATTG ATACAGGTCT
CCCCAGAAGA AACTTAGTGC TAGTTATTTT GATGGAGGAT AACTTATTAG GTAATTCAGG ACGAACTTGT TCATGGCTGA
TCAATCTCTA CAAGTATCTT GTATATCGCC GGTACTTTTA AACACAGATG AAAAATGCAA AAGTATACTT CAGAAAACAA
AATTGATTAA ATTGGTAGAA TATATTTGTA TCATAAAAGT ACATTTGTTT AAATTTTGAA AAACCTCAAT TTGTGTTAAT
TTATAGAAGG TTCCTTAACC AATAGTTTGC AAATATATAA TTAAACTTAG GATTTGAATG TGTTTGTGGT GCGTGTAAAA
GGAGCGTATT TTGATTTTGA TCCCAGTAAT GATGAAAAGT CAAGAGACCA TTTCATGGTA TCAGCAAGTC ACATCTTTAA
AAAAAAACTG TTGCGGTCTG TAAAATGTTT GTTATTTATC TATCTTAGAA TAGATGTTAG GATGAAAATA GTGATGTCAA
TGTTTGAAAT GATGAAAACC AGAGAACAAT ATTTATATGG ATTTAAACCA AAATTCATTC ATTTTATATG AACTAAAACA
ATGTTTTGTA ATGTTTTCTA AGTATAGAGG GGTTACGAAT AAAGAAAAAA AGGTTATAGC GACCAAAATT ATAACACAAT
CATTTTATAG GAATTAAAAC ATACTTAAAC CTTGTAATTA ATATTGATTG AAAAAATTTA ATAAGTTGCT TCAAGAAAAG
TTAAATGTCC TTTGGTTGAA TAACTAATTA AGGAGGAACA TGTCTACACG AAGATTGGGG ACATGTACAG ATGGAAATTA
TCCTGTCAAG AATGAGAATT GGAATGGAAC TAGGCTTGGA GGTGAGGATT AGATTGGGAA GGGTTTTGGC CAAAGAGGGA
TGTCTGTAGT AAAACCGTTT TTGTCAGTGC TCTTGTCACT AAGAACCTTT TGAAAAACAC ACTACAGAAG TTAACTTCAG
TAATTAATCA GCCCGGAATA ATATAAAACA CACTCTAAAA TTGTATACTT CTTATGTGGG ACTCCAGTAC CTTGCAATTG
GATCCCAACA TTTAGGCTTT TTTCTGTGAA AACATGTTTG TCATTAATTG TTGACTGTAT CATCTTGCAT AGATGTTGAA
TATGAATAAC TTGACTCCTA CTGTTCCTTT TATATTACAG TTACTTGATA GCTTCAATGG GTTTACAAGT CATTTGGAGT
TTTGTGCTTT CTTTATTGGA CGCATATGCA TTGGTGAATA AGAAGGTCCT TCACAACGCA GTACTGGTTA GCCTCTTTGT
AGTTGGAGAT TGGGTTAGTT TTTCATCGGT TTATACATAT AATAGATGTT CTGAAGTTAT GATCTTTCAT TTAAAAGTCT
TCTTGATTGA TTTCTACAGG TAACTGCAAC ACTATCACTA GCTGCAGCTT CTTCCTCAGC TGGCATCACC GTTTTGTACT
TCAATGATCT GGGACACTGC CATTTTGGAG AGGAATGCCA AAAGTACCAG ATTTCAGTGG CCTTAGCCTT CTTCAGCTGG
TTACCGATTT CAATATCATC CCTAATTATG CTCTGGCTAT TAGCAGCAGG CTAGCACACT CTATATCCCA CCAAGTTCTA
TCATCCATCA CATGTTCATC TAATTGGAAA TTTTCTTTGG AAGTGTCAAT AGGAAAGGAA ATAGAGTACA GGGTTTCACG
CATTTAAAAC GATTCCTTCA TTTCATCTCG AAATGTGCTA GCTGTAGATT GTAAAGAGTA AAAGAGTATA CGTGATTTTG
CCTTGCAAAG AAATTAAGTT ACCAAAGTGT TATGCTGATT TCCTGTTCTT GTAACTAGAA CAAAGTTATA CATTTTATGT
TTACAGGGAA TTGGGTTGCT AGTGCATGTT TTTGCAAGAT GGTTTTCTCT TTTCTTATCT CACAAGTATC TATTATTGGA
GTACCTTTTT ATCCTGGATT ATTATGTCAC TGATAACTAA AGCTAGTATT AAGAAG

>Vigan.08G134300.01
AAGAGAAGAA AGAGAAATGC ATTTACAAGC AACCGAGGCT GTTCTGTTTG GTCACACGTT TGACTATTGC CATTTGCCAA
CCTTAACATC CTTGCTTTCC TTATCTAATC CAACTTCTTC GTTTTCCTGT CCTGTTTTGC CCGTGACAGG CAATCTTCTC
ACCCAGATTT CAATTTCCCT TCTTCCTTTC TGGGTCTTTT TCTGTTGCCC TTAAAATTCT TAACTTTCTT TTTTCTTAAT
TTTGGGTCAA ATATGAAGAT GGGTGTTCAT CCTTAGCCAT TGAGAATCCT AGATTTGGAG GGAAAGATGA GAGATTTCCC
TGGAACACCG GGCACTGTCC TTGGTTTGAC TCTAAGGATA TCACAGTTCG TATTTGCTGC TGGATCAATT GCTTCGATGG
CTACCACTTC CAGTTTCTTT AATTTTACGG CCTTTTGTTA CTTGATAGCT TCAATGGGTT TACAAGTCAT TTGGAGTTTT
GTGCTTTCTT TATTGGACGC ATATGCATTG GTGAATAAGA AGGTCCTTCA CAACGCAGTA CTGGTTAGCC TCTTTGTAGT
TGGAGATTGG GTAACTGCAA CACTATCACT AGCTGCAGCT TCTTCCTCAG CTGGCATCAC CGTTTTGTAC TTCAATGATC
TGGGACACTG CCATTTTGGA GAGGAATGCC AAAAGTACCA GATTTCAGTG GCCTTAGCCT TCTTCAGCTG GTTACCGATT
TCAATATCAT CCCTAATTAT GCTCTGGCTA TTAGCAGCAG GCTAGCACAC TCTATATCCC ACCAAGTTCT ATCATCCATC
ACATGTTCAT CTAATTGGAA ATTTTCTTTG GAAGTGTCAA TAGGAAAGGA AATAGAGTAC AGGGTTTCAC GCATTTAAAA
CGATTCCTTC ATTTCATCTC GAAATGTGCT AGCTGTAGAT TGTAAAGAGT AAAAGAGTAT ACGTGATTTT GCCTTGCAAA
GAAATTAAGT TACCAAAGTG TTATGCTGAT TTCCTGTTCT TGTAACTAGA ACAAAGTTAT ACATTTTATG TTTACAGGGA
ATTGGGTTGC TAGTGCATGT TTTTGCAAGA TGGTTTTCTC TTTTCTTATC TCACAAGTAT CTATTATTGG AGTACCTTTT
TATCCTGGAT TATTATGTCA CTGATAACTA AAGCTAGTAT TAAGAAG

>Vigan.08G134300.01
ATGAGAGATT TCCCTGGAAC ACCGGGCACT GTCCTTGGTT TGACTCTAAG GATATCACAG TTCGTATTTG CTGCTGGATC
AATTGCTTCG ATGGCTACCA CTTCCAGTTT CTTTAATTTT ACGGCCTTTT GTTACTTGAT AGCTTCAATG GGTTTACAAG
TCATTTGGAG TTTTGTGCTT TCTTTATTGG ACGCATATGC ATTGGTGAAT AAGAAGGTCC TTCACAACGC AGTACTGGTT
AGCCTCTTTG TAGTTGGAGA TTGGGTAACT GCAACACTAT CACTAGCTGC AGCTTCTTCC TCAGCTGGCA TCACCGTTTT
GTACTTCAAT GATCTGGGAC ACTGCCATTT TGGAGAGGAA TGCCAAAAGT ACCAGATTTC AGTGGCCTTA GCCTTCTTCA
GCTGGTTACC GATTTCAATA TCATCCCTAA TTATGCTCTG GCTATTAGCA GCAGGCTAG

>Vigan.08G134300.01
MRDFPGTPGT VLGLTLRISQ FVFAAGSIAS MATTSSFFNF TAFCYLIASM GLQVIWSFVL SLLDAYALVN KKVLHNAVLV
SLFVVGDWVT ATLSLAAASS SAGITVLYFN DLGHCHFGEE CQKYQISVAL AFFSWLPISI SSLIMLWLLA AG*