GBrowse Details

Vigan.08G115000.01

Basic Information:
Name: Vigan.08G115000.01
Multiple alignment
Variant Information
Position: Chr08:10012474..10015606 (+ strand)
Length: 3133
Functional Information:
Description: Similar to Uncharacterized protein. [I1LCS9, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Myb domain, plants (IPR006447)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.17,1.95,5.21,3.71,7.35,3.16,25.63,3.02
Arabidopsis thaliana homolog: AT1G25550.1
Automatic updates:
Name: KT031196 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_161 MYB/HD-like transcription factor (Glyma10g34780.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:10012474..10012828 (+ strand)
Length: 355
Type: five_prime_UTR
Position: Chr08:10012829..10012964 (+ strand)
Length: 136
Type: CDS
Position: Chr08:10013104..10013396 (+ strand)
Length: 293
Type: CDS
Position: Chr08:10013527..10013803 (+ strand)
Length: 277
Type: CDS
Position: Chr08:10013885..10013961 (+ strand)
Length: 77
Type: CDS
Position: Chr08:10014263..10014634 (+ strand)
Length: 372
Type: CDS
Position: Chr08:10014635..10015606 (+ strand)
Length: 972
Type: three_prime_UTR

>Vigan.08G115000.01 class=Sequence position=Chr08:10012474..10015606 (+ strand)
AAACAAATGA AAAAACAATA TAAAAAGCAT CAAAGATTCT GTATGCGACG CCCCGACCGC GATATTTTCC CGAGCTGTTG
GTTTCAATTC AATGTCTCGT TTTCTCGACC CATCTCTCTC TGTTCCTCTT TTGTTGGGAA TTTTCTTTTT TCTTTTTAGT
TTTTCCAATT GTTTTCCTTG CTTGGTTTAC AAGACTATTT TATTATTCCA AAATTTGATT CCAAGATCCC ATATTCTTCA
ATGAGAAGCT CTCTCCTCGC TCCTTTCTGC TTCCATAAAA CGCCATTTCC TTGTATATCT CTTTTCCCTC TTCTTTCTGT
TTTTCTACTT TACTCCACCA CCTTGGCTTC CATAAATGTA TTTTTTCACT GAGAAAATGC AGCGTTTGAA GCTGGGGTTT
CCTGACTACA TCCAGGCATT GGAAGAAGAA CGCCGTAAGA TTCAGGTCTT CTGCAAAGAG CTTCCTCTTT CCTTCGAGCT
AGTTACTCAA GGTAACCCAA CAAACAAACA AACAAACCAT ATCCTTTTGT TGCTTTCTAG AAGATCATAA AGTTTCCTCC
TTTATTTTCT GGGTTTGTTT ACTGAAAGGT TTTTGTTTTC TTGGTTTTGT TGTTTTTATT ATGTTTGCAG CAATTGAAGC
TTGCAGACAA CAGTTGTCTG GCACCACTAG CGAGTATAAT TTGAATGGTC AATCGGAGTG TTCGGAGCGG ACAACATCAT
CGGAGGGACC AGTCTTGGAG GAGTTCATTC CGATCAAGAA AAGGGCATCA TCATCCCCCT GTTGCGATGA AGATGACGAA
GACTATGAAC AGCATTCTCT CAGGCAAACG GTTTTAAATG AGAATAATAA TAACAGTGAT AAGAGGAAAT CCGACTGGCT
CAGATCTGTT CAGCTGTGGA ATCCAGATCC CCCAGCTGAG GAGGTAAAAA GACCAAAGCT TAATTGTGAA TTTTCCATTG
TTTGAATAAG TTTTGTGCTT TTTGTAGACG ATGTTTGTTA ATTGACTATT TTTCCTTTTT GTGTGTATGC AATTTCCTTG
GCAAATTGTT CAGGATGCGA CTAAGAAAGT TCCTGGGATG GAATTGAAGA GAAGTGGGAG TGGTGGTGGT GCTTTCCAGC
CATTCCACAG GGAAGAAAGA GCTACAAAGG AAACTGAAAC ATTGTATAAA GCACCCTCTT CAACTCGGGT ACCTGCTGCG
AGTTCTAGCG CCGGAGAACT CACCCCAGAA AAAAATCAGA ATGAGGGACA GAGAAAGCAG CGCAGATGCT GGTCTCAGGA
CTTACACAAG CGCTTCTTGC ATGCCCTTCA GCAGCTTGGG GGTGCAGATT GTGAGTATCT TAATCGGTTT TGATTGTTTT
GTCATGTGCT TGGGATGTCA CTATAATTGC CTATTTTCGT GGTTTCTGCA GCTGCCACAC CAAAACAAAT CCGAGAGCTA
ATGAATGTTG ATGGACTCAC AAATGATGAA GTGAAAAGCC ATTTACAGGT ATGTTAGGTA TATATATATG CTGTTTGTAT
CCAAATTCAC AAAGATTGGT TAACAAAATT AACTTAAGCT GGTAGAATCA CAATCGGGGT CTTTGCTATT GTAATTTCCA
TTGTCTAGTC TAGTCTCCCC GGTGTGGAAT CGTTAACTGT TTGTTCTTGT TTCCTTAACC CTCCCCTCCA GTTTTAAGGG
GGTCCAAACT AATTAAGTTT TTTTGTTTCA GAAGGTATAG TAAATATTCT TGAGATCCAG CCGTTCCATA TTCTGAATCA
TAGTCTAAAT TTTTCTGTGT TTTGGACAGA AATACCGTTT GCACACCAGA AGGCCAAGTC CCTTGGTTCA CAACAATTCC
AGTCCACAAG CAGCGCCTTT TGTCCTTGTA GGGAACATTT TTGTTCAGTC ACCAGAATAT GCTGCTGTAG CTACCTCAAC
AGCATCAAGA GAAGTGACCA CAGTTACAGC ACCTGCTGGA GTTTATGCAC CAGTGGCCAC ACATCCTAAG CCTGTTTCAC
AACCATCAGC CGATTCAATT AAGAAGCCAC AGTTTAAGAA ATTTAAGCAT TCTGAACATT CAAATTCAAA TGAAAGGGGT
CATCACAGTG AAGGAGCCGT TCATTCAAAT TCCCCTACCT CATCCTCCTC TACACACACC TCTGCTTCCC CTGGTTATTA
AGTTTAAAAT GTTGCACAAG TTTTGTTACC AAATTGCTGT AGAAAGTCCT TTGATATTTC CTTCTGACGT TTTTTTTGTA
CTAAAATTAT CTTTACTCCT GTTATATGGG ATTTAAATCA GAGGTAAAAT ACACAGTGAC AGTTTTGATG TTAAATAAGT
CCACCCCACC CTCATAGCTG GCTACCATGT TATCTCCTTG CACAGAAGGT GAACTGAAAT TTCAAATTTT AAATTTGGAA
GCATGATCAA TGTTTCAATT GGTACTTCTT GAGATTGTGA CTAATTAAAA GTTACTAGTC TGACTTAGTC ATACTCCTTC
CACATTGAGC AAATTCTTAA TCACACCTAT GTACTTGTGT TGTTGATGCG TTATTTTAGT GGTCCACCTA AGCATCTAAA
TTGATTTGGT TGATTGGTTG TGGTTAGAAT TAATGGGTTA TAGTTGCAGC ACGATTTTTC TTAAGGAGGA TCTAAGAATA
TCCAATGGAA TATGCAATGA TATTATCTAC ATAGAACAAA AGGAGATGCA GACATGTGTC AGTTGTGAAA GTGCCAAATT
CAGCATCTCT GAATTACAAT ATTGCTAAAG ACCTTCCTTG ATTTTTAAAA AACGGTTTGT TACGATATTA ATTGGATTGT
GACCAAATAC TATTGAGGAA TATTAAAGAT TACAGCAATG GTTAGGTTCT GCCGGATAGT CCTCATTAAT TATTTTGGCC
CTTGTTTCTT CTTTTGGAGT GAGCCAAAGT AACCTTGCGA GTTGGACAAG AGATTGCCAA ATAAGCAAAG GTACTACTCA
AAGTTTGCAC AAATATTCAA GCCATTTGCA CTGCAGGATT CTGCTCTCGA ATCTTCTAAA TTTGATTCTC ATTGAACTAC
TATTTTTGTC TTTACTTGGC AAAATATGGC TAGAGACAAG CCTTCATAAC TAAGGACGGG TTAACTTAAT TTCCTTTCTT
TTTTTAATTT TCA

>Vigan.08G115000.01
AAACAAATGA AAAAACAATA TAAAAAGCAT CAAAGATTCT GTATGCGACG CCCCGACCGC GATATTTTCC CGAGCTGTTG
GTTTCAATTC AATGTCTCGT TTTCTCGACC CATCTCTCTC TGTTCCTCTT TTGTTGGGAA TTTTCTTTTT TCTTTTTAGT
TTTTCCAATT GTTTTCCTTG CTTGGTTTAC AAGACTATTT TATTATTCCA AAATTTGATT CCAAGATCCC ATATTCTTCA
ATGAGAAGCT CTCTCCTCGC TCCTTTCTGC TTCCATAAAA CGCCATTTCC TTGTATATCT CTTTTCCCTC TTCTTTCTGT
TTTTCTACTT TACTCCACCA CCTTGGCTTC CATAAATGTA TTTTTTCACT GAGAAAATGC AGCGTTTGAA GCTGGGGTTT
CCTGACTACA TCCAGGCATT GGAAGAAGAA CGCCGTAAGA TTCAGGTCTT CTGCAAAGAG CTTCCTCTTT CCTTCGAGCT
AGTTACTCAA GCAATTGAAG CTTGCAGACA ACAGTTGTCT GGCACCACTA GCGAGTATAA TTTGAATGGT CAATCGGAGT
GTTCGGAGCG GACAACATCA TCGGAGGGAC CAGTCTTGGA GGAGTTCATT CCGATCAAGA AAAGGGCATC ATCATCCCCC
TGTTGCGATG AAGATGACGA AGACTATGAA CAGCATTCTC TCAGGCAAAC GGTTTTAAAT GAGAATAATA ATAACAGTGA
TAAGAGGAAA TCCGACTGGC TCAGATCTGT TCAGCTGTGG AATCCAGATC CCCCAGCTGA GGAGGATGCG ACTAAGAAAG
TTCCTGGGAT GGAATTGAAG AGAAGTGGGA GTGGTGGTGG TGCTTTCCAG CCATTCCACA GGGAAGAAAG AGCTACAAAG
GAAACTGAAA CATTGTATAA AGCACCCTCT TCAACTCGGG TACCTGCTGC GAGTTCTAGC GCCGGAGAAC TCACCCCAGA
AAAAAATCAG AATGAGGGAC AGAGAAAGCA GCGCAGATGC TGGTCTCAGG ACTTACACAA GCGCTTCTTG CATGCCCTTC
AGCAGCTTGG GGGTGCAGAT TCTGCCACAC CAAAACAAAT CCGAGAGCTA ATGAATGTTG ATGGACTCAC AAATGATGAA
GTGAAAAGCC ATTTACAGAA ATACCGTTTG CACACCAGAA GGCCAAGTCC CTTGGTTCAC AACAATTCCA GTCCACAAGC
AGCGCCTTTT GTCCTTGTAG GGAACATTTT TGTTCAGTCA CCAGAATATG CTGCTGTAGC TACCTCAACA GCATCAAGAG
AAGTGACCAC AGTTACAGCA CCTGCTGGAG TTTATGCACC AGTGGCCACA CATCCTAAGC CTGTTTCACA ACCATCAGCC
GATTCAATTA AGAAGCCACA GTTTAAGAAA TTTAAGCATT CTGAACATTC AAATTCAAAT GAAAGGGGTC ATCACAGTGA
AGGAGCCGTT CATTCAAATT CCCCTACCTC ATCCTCCTCT ACACACACCT CTGCTTCCCC TGGTTATTAA GTTTAAAATG
TTGCACAAGT TTTGTTACCA AATTGCTGTA GAAAGTCCTT TGATATTTCC TTCTGACGTT TTTTTTGTAC TAAAATTATC
TTTACTCCTG TTATATGGGA TTTAAATCAG AGGTAAAATA CACAGTGACA GTTTTGATGT TAAATAAGTC CACCCCACCC
TCATAGCTGG CTACCATGTT ATCTCCTTGC ACAGAAGGTG AACTGAAATT TCAAATTTTA AATTTGGAAG CATGATCAAT
GTTTCAATTG GTACTTCTTG AGATTGTGAC TAATTAAAAG TTACTAGTCT GACTTAGTCA TACTCCTTCC ACATTGAGCA
AATTCTTAAT CACACCTATG TACTTGTGTT GTTGATGCGT TATTTTAGTG GTCCACCTAA GCATCTAAAT TGATTTGGTT
GATTGGTTGT GGTTAGAATT AATGGGTTAT AGTTGCAGCA CGATTTTTCT TAAGGAGGAT CTAAGAATAT CCAATGGAAT
ATGCAATGAT ATTATCTACA TAGAACAAAA GGAGATGCAG ACATGTGTCA GTTGTGAAAG TGCCAAATTC AGCATCTCTG
AATTACAATA TTGCTAAAGA CCTTCCTTGA TTTTTAAAAA ACGGTTTGTT ACGATATTAA TTGGATTGTG ACCAAATACT
ATTGAGGAAT ATTAAAGATT ACAGCAATGG TTAGGTTCTG CCGGATAGTC CTCATTAATT ATTTTGGCCC TTGTTTCTTC
TTTTGGAGTG AGCCAAAGTA ACCTTGCGAG TTGGACAAGA GATTGCCAAA TAAGCAAAGG TACTACTCAA AGTTTGCACA
AATATTCAAG CCATTTGCAC TGCAGGATTC TGCTCTCGAA TCTTCTAAAT TTGATTCTCA TTGAACTACT ATTTTTGTCT
TTACTTGGCA AAATATGGCT AGAGACAAGC CTTCATAACT AAGGACGGGT TAACTTAATT TCCTTTCTTT TTTTAATTTT
CA

>Vigan.08G115000.01
ATGTATTTTT TCACTGAGAA AATGCAGCGT TTGAAGCTGG GGTTTCCTGA CTACATCCAG GCATTGGAAG AAGAACGCCG
TAAGATTCAG GTCTTCTGCA AAGAGCTTCC TCTTTCCTTC GAGCTAGTTA CTCAAGCAAT TGAAGCTTGC AGACAACAGT
TGTCTGGCAC CACTAGCGAG TATAATTTGA ATGGTCAATC GGAGTGTTCG GAGCGGACAA CATCATCGGA GGGACCAGTC
TTGGAGGAGT TCATTCCGAT CAAGAAAAGG GCATCATCAT CCCCCTGTTG CGATGAAGAT GACGAAGACT ATGAACAGCA
TTCTCTCAGG CAAACGGTTT TAAATGAGAA TAATAATAAC AGTGATAAGA GGAAATCCGA CTGGCTCAGA TCTGTTCAGC
TGTGGAATCC AGATCCCCCA GCTGAGGAGG ATGCGACTAA GAAAGTTCCT GGGATGGAAT TGAAGAGAAG TGGGAGTGGT
GGTGGTGCTT TCCAGCCATT CCACAGGGAA GAAAGAGCTA CAAAGGAAAC TGAAACATTG TATAAAGCAC CCTCTTCAAC
TCGGGTACCT GCTGCGAGTT CTAGCGCCGG AGAACTCACC CCAGAAAAAA ATCAGAATGA GGGACAGAGA AAGCAGCGCA
GATGCTGGTC TCAGGACTTA CACAAGCGCT TCTTGCATGC CCTTCAGCAG CTTGGGGGTG CAGATTCTGC CACACCAAAA
CAAATCCGAG AGCTAATGAA TGTTGATGGA CTCACAAATG ATGAAGTGAA AAGCCATTTA CAGAAATACC GTTTGCACAC
CAGAAGGCCA AGTCCCTTGG TTCACAACAA TTCCAGTCCA CAAGCAGCGC CTTTTGTCCT TGTAGGGAAC ATTTTTGTTC
AGTCACCAGA ATATGCTGCT GTAGCTACCT CAACAGCATC AAGAGAAGTG ACCACAGTTA CAGCACCTGC TGGAGTTTAT
GCACCAGTGG CCACACATCC TAAGCCTGTT TCACAACCAT CAGCCGATTC AATTAAGAAG CCACAGTTTA AGAAATTTAA
GCATTCTGAA CATTCAAATT CAAATGAAAG GGGTCATCAC AGTGAAGGAG CCGTTCATTC AAATTCCCCT ACCTCATCCT
CCTCTACACA CACCTCTGCT TCCCCTGGTT ATTAA

>Vigan.08G115000.01
MYFFTEKMQR LKLGFPDYIQ ALEEERRKIQ VFCKELPLSF ELVTQAIEAC RQQLSGTTSE YNLNGQSECS ERTTSSEGPV
LEEFIPIKKR ASSSPCCDED DEDYEQHSLR QTVLNENNNN SDKRKSDWLR SVQLWNPDPP AEEDATKKVP GMELKRSGSG
GGAFQPFHRE ERATKETETL YKAPSSTRVP AASSSAGELT PEKNQNEGQR KQRRCWSQDL HKRFLHALQQ LGGADSATPK
QIRELMNVDG LTNDEVKSHL QKYRLHTRRP SPLVHNNSSP QAAPFVLVGN IFVQSPEYAA VATSTASREV TTVTAPAGVY
APVATHPKPV SQPSADSIKK PQFKKFKHSE HSNSNERGHH SEGAVHSNSP TSSSSTHTSA SPGY*