GBrowse Details

Vigan.08G078200.01

Basic Information:
Name: Vigan.08G078200.01
Multiple alignment
Variant Information
Position: Chr08:6337121..6340435 (- strand)
Length: 3315
Functional Information:
Description: Similar to transmembrane ascorbate ferrireductase 1-like isoform X2. [XP_004496576.1, Cicer arietinum]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Cytochrome b561, eukaryote (IPR004877)
Cytochrome b561/ferric reductase transmembrane (IPR006593)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:203.97,25.35,183.66,252.79,156.50,125.20,220.61,173.87
Arabidopsis thaliana homolog: AT4G25570.1
Automatic updates:
Name: NM_001248069 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306179 (LOC100306179), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250219 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527259 (LOC100527259), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:6337121..6337415 (- strand)
Length: 295
Type: three_prime_UTR
Position: Chr08:6337416..6337712 (- strand)
Length: 297
Type: CDS
Position: Chr08:6337925..6338124 (- strand)
Length: 200
Type: CDS
Position: Chr08:6338229..6338277 (- strand)
Length: 49
Type: CDS
Position: Chr08:6340098..6340241 (- strand)
Length: 144
Type: CDS
Position: Chr08:6340242..6340435 (- strand)
Length: 194
Type: five_prime_UTR

>Vigan.08G078200.01 class=Sequence position=Chr08:6337121..6340435 (- strand)
AGCGGATAAT GTAAAAGATC TAGATGGGGC GCATGATAAG GTCAAATAGG GTGGAGGCTC CTGATATCTT CTTATATACT
AATTGGAGTT TGTTTGAATT CACAGATTGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGT GTTTGTAATA ACCTCCATTG
AAGAGAAGGC AGAGAGAAGA GAAAAGAAGA GAAGATGGGG TTAGGTATAC CTGCTTTTCC CTTGACGATC GTGACTCACG
TTCTGGGCGT GGTTGCCACC GTTCTCGTAT TGGTTTGGCT CGTCAATTTC AGGGGAGGCT TGGCTTGGGA AGATGAAAAC
AAGCAACTCA TCTTCAATGT ATGCTTCCAC CCTCTCTTTC TTCAATTTTA GATAACTTTA CATGTTAGAC TACTTCTTCC
TCATTCCCCA ACTCTAGTTT TTCCCTTTAC TGTCACTCTT ATCCATTTCT TTTCGAAGTA AGTTTCAAAG GATAATGATT
TGTATGTTTT TAAACCTTAA TAATGTTTTT TTTAACTTAG ATGAATATGT TTTTATCTTT TCAAATTATA TTTTACCATG
ATAAGTATGG AGATATTTTT ATGCTTAGTA AAACTTCTTT ATAAGTATGT AATTGAACAT GTGTAATTGT GTAAAAAAAA
AAATATTAAC AGTTTTTTTA CCCTTTCTTT CCCTGCTTAT TCCTATAATT AATTATGTTA ACACTGATCT TGTTTTTAAT
AAATACACAT CACAAATATT AAAGACCAAT CATGTTTGGA GTTATTTAAT TATTAACTAA GTTAAATGTT ATATTAAGAC
ATGTTTGTTA TTATTGTATT GCAGTGAATA TTTACTCTAA ATTAAAAATA TATATATATA TATATATATA TATATATATA
TATATATATA TACTTTCTCA AATTTAAAAA TAAAGCGTTG GTGGCAAGAG GTGACATTAG AAGTATCTCA AATTTAATAC
TTGATTCGTT AAACTAGTTT GTGTCTGAAG CTCTGAAACG TTGCTTTTGA TATGATTCAT TTATAGCAAA TTGTACTAAC
TGGGATGTTT CTTAAGGGCG TGAACCTCGT GTGATATGTA TACCTATATT ATATTTATGA GGATGCTGCT AGTTGTCATA
AAATTCAATG TGAGATATTA TTTTTATATC TAAAAGAGGG CATTCATATA AACCAGTGCC AGATCACTCT GCTCAAAAAA
AGGAAATACA ATATTCAGTA GCAGATCCCT TGGTTGTCCC ATAAATTAAA TAAGCTAAGA TATGTTTTAA TGGCTAGCTA
AATGATGGCT AAAGAAGCTG ACTTACTTTA GCTTTATTTT GGTATGTTTA TCTAATAATT TAAGAGGGAA TGTTTAGGTA
ATTATTACCA AGTTTCTGTT TTACTGCTCT AGTCACTTTG AGTGTTGCTA TTGCAAATTG AATCCCTAGT ATGAAGAATG
TTGAATTCAC AGGTTGAACA GAGCCTGAAT TGATGTAATC TTTCAGTATC AGAATATACT CTTATATGCG AATAAAATAG
AATTGGGACC TAATTTTGTT TTCCTATTTT GTCGGTCAAG TCCTGCTTTC TAAGCTTAAC TGGAAAATGA AAACTGTGTT
TCGGAAGCTT TGCGTGTGCA TTCTTTATTA TTATTTTATT ATTTGTCGAT TAATTATTGA CCATGTTTTC ACTTGTGGAA
CGCACATGGA CAGACATGAC ATGCTTATCT GTTTTGGACT TGAGTGAGAA ATAAACTAGC CGTCATGTGC CACCTATGGC
TGCGTCTCTA TTTTCTTGGT CAAGAGTTTT GAATTTTGGG TGTCTATCTT CTATGATTAA TTATTTGAAC ATGCCATTTG
CACATGTCGT TTCCTTCAGG CAGAAAATCA GTATGCCTAT CAGTACACTC CTTTACATTT GCATGCGTCT GTGATTAGAA
AAGAACGCGA TACTCTGAGA TGGAGTCCTT TGAATTTTAT TTTTTGAAGA GAGAAAAGTA TAATTTTTTA AATTCTCTTA
ATCTGAATTA ACATTATGGC TTATGCATCA AGAGATCAAA GAAATGTCTG TAGAATATTT TGTTACACAA TTTGGTTGAT
GTACAGAGTA TTTGTTGCTG AATTCTGATA TTACTTTTTG GAAGTCCCTA TAACTTACGT ATATTTTCCA TTATACAGAT
TCATCCATTT CTTATTGTTT TTGGCCTCAT AGTTCATGGA GGTGAAGGTA ATCAAAATAC TTTCAAAGGA ATTTCTTCAT
TAATCAATTC CATTTGATTT GTTAACCCAC TAATTGTTTC TCTGATTTTC TCACACGGAA AATATATTCA GCTATTATAA
GTTACAAAGC TCTTCCTCTG AAGAAGGAAG TGAAGAAAGT GGTACACCTT GGTCTTCACG GAGCCGCTTT ATCACTTGGA
ATAATTGGAA TTTATACTGC CTTCAAGTAT CACAATGAAA GTGGGATTGC CAACCTATAC AGTTTGCATT CATGGCTTGG
AATTGGGGTT ATTGTCCTCT ATGGCATTCA GGTAAACCAC TGGGTGTATA TACCAGGCTA TCCTATGAAT GTAGTATACC
TTGGAGACAG GATATGATTA TGGTTAAGTT TATGATTTTA GTTTAAGCAC CAGACATATA CTCTATGGTG CAAGCTATGA
ATTAAAAATG TGGACTTTGC TTGTGTCCAA ATGAAACTCA ATTATTTACT AATTTTGTCT AACATTGTGT TGGTTACCTG
CAGTGGATAT ATGGGTTTGT GATCTTTTTC TACCCTGGTG GGACTCCAGA TATTAGACGT TTCTCTCTTC CTTGGCATGC
ACTGTTTGGG CTCTTTGTGT TTGTCTTGGC TGTGGGAACA GCTACTCTTG GATTTCTGGA GAAGCTCACT TTCTTGGAGA
GCACAGGATT GGATAAGTAT GGTTCTGAGG CTTTGCTTGT GAACTTCACT GCTATCATCA CAATCTTATT TGGTGTCTTT
GTTGTGCTAT CTGCTTTAGC TGATGCTCCT GCAGCAGCAG ATGACTATGA AGCAATATAA ACTTTTGTCT GTATCATATT
TTTATTCTTA TGAAATAATC TCATGTCTGC TATTAGTTTG TGTGTATTGG GTGTAGGAAG AAGGAACCAA TTTGTTGTTT
GTATTTTTGG GCATAATAAA GTCTGTGATT TGATCATCAG TATCAACACA TCAACCCAAA AGTGTGTGAT CAGTCACTGG
TTTACGTAAG GTTTATTAGT TGTCAACTTA AACTTGGTCA AATTGCGGCC AAATGTTGAA AAATCAGTCT GTAATTTTAG
TGCATGTTTC TTTTTCTGTC AAGTTTGATC TGAAT

>Vigan.08G078200.01
AGCGGATAAT GTAAAAGATC TAGATGGGGC GCATGATAAG GTCAAATAGG GTGGAGGCTC CTGATATCTT CTTATATACT
AATTGGAGTT TGTTTGAATT CACAGATTGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGT GTTTGTAATA ACCTCCATTG
AAGAGAAGGC AGAGAGAAGA GAAAAGAAGA GAAGATGGGG TTAGGTATAC CTGCTTTTCC CTTGACGATC GTGACTCACG
TTCTGGGCGT GGTTGCCACC GTTCTCGTAT TGGTTTGGCT CGTCAATTTC AGGGGAGGCT TGGCTTGGGA AGATGAAAAC
AAGCAACTCA TCTTCAATAT TCATCCATTT CTTATTGTTT TTGGCCTCAT AGTTCATGGA GGTGAAGCTA TTATAAGTTA
CAAAGCTCTT CCTCTGAAGA AGGAAGTGAA GAAAGTGGTA CACCTTGGTC TTCACGGAGC CGCTTTATCA CTTGGAATAA
TTGGAATTTA TACTGCCTTC AAGTATCACA ATGAAAGTGG GATTGCCAAC CTATACAGTT TGCATTCATG GCTTGGAATT
GGGGTTATTG TCCTCTATGG CATTCAGTGG ATATATGGGT TTGTGATCTT TTTCTACCCT GGTGGGACTC CAGATATTAG
ACGTTTCTCT CTTCCTTGGC ATGCACTGTT TGGGCTCTTT GTGTTTGTCT TGGCTGTGGG AACAGCTACT CTTGGATTTC
TGGAGAAGCT CACTTTCTTG GAGAGCACAG GATTGGATAA GTATGGTTCT GAGGCTTTGC TTGTGAACTT CACTGCTATC
ATCACAATCT TATTTGGTGT CTTTGTTGTG CTATCTGCTT TAGCTGATGC TCCTGCAGCA GCAGATGACT ATGAAGCAAT
ATAAACTTTT GTCTGTATCA TATTTTTATT CTTATGAAAT AATCTCATGT CTGCTATTAG TTTGTGTGTA TTGGGTGTAG
GAAGAAGGAA CCAATTTGTT GTTTGTATTT TTGGGCATAA TAAAGTCTGT GATTTGATCA TCAGTATCAA CACATCAACC
CAAAAGTGTG TGATCAGTCA CTGGTTTACG TAAGGTTTAT TAGTTGTCAA CTTAAACTTG GTCAAATTGC GGCCAAATGT
TGAAAAATCA GTCTGTAATT TTAGTGCATG TTTCTTTTTC TGTCAAGTTT GATCTGAAT

>Vigan.08G078200.01
ATGGGGTTAG GTATACCTGC TTTTCCCTTG ACGATCGTGA CTCACGTTCT GGGCGTGGTT GCCACCGTTC TCGTATTGGT
TTGGCTCGTC AATTTCAGGG GAGGCTTGGC TTGGGAAGAT GAAAACAAGC AACTCATCTT CAATATTCAT CCATTTCTTA
TTGTTTTTGG CCTCATAGTT CATGGAGGTG AAGCTATTAT AAGTTACAAA GCTCTTCCTC TGAAGAAGGA AGTGAAGAAA
GTGGTACACC TTGGTCTTCA CGGAGCCGCT TTATCACTTG GAATAATTGG AATTTATACT GCCTTCAAGT ATCACAATGA
AAGTGGGATT GCCAACCTAT ACAGTTTGCA TTCATGGCTT GGAATTGGGG TTATTGTCCT CTATGGCATT CAGTGGATAT
ATGGGTTTGT GATCTTTTTC TACCCTGGTG GGACTCCAGA TATTAGACGT TTCTCTCTTC CTTGGCATGC ACTGTTTGGG
CTCTTTGTGT TTGTCTTGGC TGTGGGAACA GCTACTCTTG GATTTCTGGA GAAGCTCACT TTCTTGGAGA GCACAGGATT
GGATAAGTAT GGTTCTGAGG CTTTGCTTGT GAACTTCACT GCTATCATCA CAATCTTATT TGGTGTCTTT GTTGTGCTAT
CTGCTTTAGC TGATGCTCCT GCAGCAGCAG ATGACTATGA AGCAATATAA 

>Vigan.08G078200.01
MGLGIPAFPL TIVTHVLGVV ATVLVLVWLV NFRGGLAWED ENKQLIFNIH PFLIVFGLIV HGGEAIISYK ALPLKKEVKK
VVHLGLHGAA LSLGIIGIYT AFKYHNESGI ANLYSLHSWL GIGVIVLYGI QWIYGFVIFF YPGGTPDIRR FSLPWHALFG
LFVFVLAVGT ATLGFLEKLT FLESTGLDKY GSEALLVNFT AIITILFGVF VVLSALADAP AAADDYEAI*