GBrowse Details

Vigan.08G068300.01

Basic Information:
Name: Vigan.08G068300.01
Multiple alignment
Variant Information
Position: Chr08:5365258..5367578 (- strand)
Length: 2321
Functional Information:
Description: Similar to Uncharacterized protein. [I1LE20, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: IQ motif, EF-hand binding site (IPR000048)
Domain of unknown function DUF4005 (IPR025064)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.05,5.50,1.65,0.42,0.08,0.31,3.39,0.67
Arabidopsis thaliana homolog: AT4G14750.1
Automatic updates:
Name: NM_001357605 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max calmodulin-binding domain-containing protein IQD38 (GMIQD38), mRNA.
PubMed ID: 25343341 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:5365258..5365325 (- strand)
Length: 68
Type: three_prime_UTR
Position: Chr08:5365326..5366141 (- strand)
Length: 816
Type: CDS
Position: Chr08:5366375..5366599 (- strand)
Length: 225
Type: CDS
Position: Chr08:5366709..5367170 (- strand)
Length: 462
Type: CDS
Position: Chr08:5367171..5367578 (- strand)
Length: 408
Type: five_prime_UTR

>Vigan.08G068300.01 class=Sequence position=Chr08:5365258..5367578 (- strand)
GGGAAATGAA AATTCTTTTT AACTTTAGAC TATGGAGGGC AAGGAATCTT ATTATCTTAA TCGGTAACAG TTGCATAATG
CTCCAGATTG TGGCAAGTGG CTTATGCGGG GAGCTTCCTC TTGGCTTTTT TTTCTTTCAC ACAGCCAGGC CTTACCTGTT
GCATGGCATA GAGACCCCCA AAAACATATT CTCAAAATGG TGGTTAGTAA TTAGTACGGA AAAGATGTCA TGAGACAGTG
AGTTTAAGCT GTCAAATAGC GTTGTCTATT TTCAATAAGG GGGCCATGAT GTTGAAAGAA ACTTAAAAAA TGTAGATATG
AAGAGATCTA CAGATCGTTT TTGTTACTTT CTTTAAGTTT GTTGCTACTT GTTAGTATCC GTATCAGCTT ACTAGGAGTT
TGAAAGAGAT GGGGAAGACG GGCAAATGGC TTAGAAACTT GTTGACCGGT AAGAAAGACA AGGAAAAAGA GAAGGAAAAA
TCTACATCTA ACCTGAATTT TGCTTCAAAT GGAACAGAAA ACTCAGCCAC TCCAACTTCC ACAACCCCAA AGGAGAAAAA
GAGATGGAGT TTCAGAAGAT CATCAGCCAC TTCCACAGCC ACACTAGTAT CAGTTTCCAA GGAATTGAAT TTTGTAGAAC
CAACTGTCAC TGCTTCGCAG ACAGTGCAAG CTGACACGGA TGATCAGAAT GAGCAAAGGA AGCATGCCAT GGCTGTGGCT
GCTGCCACCG CAGCAGCAGC TGATGCTGCG GTGGCAGCTG CTGAGGCTGT AGCTGTTGTG ATCCGTTTGA CTTCTGCTTC
CAATGCAACA TCTAAAAGCA TTAAAGAGGC TGCTGCCATT AAAATCCAAT CAGTCTTTCG GTCTCATTTG GTATTTCAGT
TATATGGAAG CTAGTTTTGT CTTTCATTCA CTAGGGAATC GTTGGAATTT GAGTGTGTGG TTGTGTGATA CGATATGTAT
CATTGTTTAT ATATGACAGG CAAGGAAAGC ATTGTGCGCT CTAAGAGGAC TGGTGAAGTT GCAGGCACTG GTAAGGGGTC
ATTTGGTGAG AAAACAGGCC AAGGAAACAC TGAGATGCAT GCAGGCTTTG GTGACGGCAC AAGCTAGAGC TCGTATTCAG
AGGATCCGAA TGGGTTCAGA AGGAATTCCT AATCAACAAC AAAGAAAAGC CACAGATGAT GATCTGTTCA GGCAAATATA
TAATGTCAGT ATCATAACTG CTCTCAATTA TCTTTTGACA GTTGAAAATG AAATTTCAAT CATTTATGGG ATATATAATA
TACATGATGG TGTGAAATTC TTTGTTAGCT GTATCTTTTC AGCATAATAA CGAAATTTTG CACTGAAAGT ACAAAAATTT
AATGTTGAAA TATATGGCGA AGCACTCAAG GAAATGTGGG TATCATTGAT ATGAAATATG GATTTTTGTA CATATAGGAA
ATGGAGAGAG GCTTGGAAGA CAATATCAAG ATTGTTGAGA TGGATGTGGG TGAAACAAAA AGTGATTGCA GAAGTAGAAG
CAGCAGTGTA TATCATCATG GGCATCAAGA ACAGCATGAC CATAGATTTT CCACACATTA TTCAACAAAT GGTTTCTACT
CAAAGGAAGA AAACTACAAG GTGTCACCAG CTCCATCAGC ATTGACAGAG TTGAGCACAA GAGAATGCAG TGGCCATTTT
GAGGACTGTT TCAGCACAGC CCAAAGCAGC CCTCAGTTCC ACTCTGCTGT GTCAAGAACA GAAAATTCAA AGCACCTTTT
TTCTTTTCCA AGGCCAGCTT ATGCAGAGTC TATGTGCGAT GACTACCCTC TGTTTCCAAA TTACATGGCT AACACTGAAT
CATCAAGGGC CAAAGTCAGA TCGCATAGTG CACCGAAACA AAGACCCGAT TCATTTGAGA GGCAACCAAG CCGCCGAAGA
GCTTCAGTAG AGGGAAGAAA TGTCCCAAGG CCAATTAGGA TGCAAAGGTC ATCTTCACAT GTGAGTGCCA CTGCTCAAAA
CTATCAATAT CCTTGGTCAA TCAAGCTTGA CAGATCCGCA GTTTCACTCA AAGACAGCGA GTGTGGCTCT GCAAGTACAG
TGCTCACTAA CACTAATTAT TGCAGATCTC TTGTTGCATT TGACGTGAGT ACTTTCCGTT CTCGCACTCA TACCATAAAT
TTTGTCATAA ACTCGAATAC TAAAGTAGAT ATAAACAAGA AAATTAAGAG TAACCATGTT TGCTGTTTAA TAATATACTA
TGTGTATTCT TAATATCGGT TTGTAACATT GTTGGTCTGA CAATGTTTTT TCGATTGACT GCAGCCACGT GGAGATAGGT
A

>Vigan.08G068300.01
GGGAAATGAA AATTCTTTTT AACTTTAGAC TATGGAGGGC AAGGAATCTT ATTATCTTAA TCGGTAACAG TTGCATAATG
CTCCAGATTG TGGCAAGTGG CTTATGCGGG GAGCTTCCTC TTGGCTTTTT TTTCTTTCAC ACAGCCAGGC CTTACCTGTT
GCATGGCATA GAGACCCCCA AAAACATATT CTCAAAATGG TGGTTAGTAA TTAGTACGGA AAAGATGTCA TGAGACAGTG
AGTTTAAGCT GTCAAATAGC GTTGTCTATT TTCAATAAGG GGGCCATGAT GTTGAAAGAA ACTTAAAAAA TGTAGATATG
AAGAGATCTA CAGATCGTTT TTGTTACTTT CTTTAAGTTT GTTGCTACTT GTTAGTATCC GTATCAGCTT ACTAGGAGTT
TGAAAGAGAT GGGGAAGACG GGCAAATGGC TTAGAAACTT GTTGACCGGT AAGAAAGACA AGGAAAAAGA GAAGGAAAAA
TCTACATCTA ACCTGAATTT TGCTTCAAAT GGAACAGAAA ACTCAGCCAC TCCAACTTCC ACAACCCCAA AGGAGAAAAA
GAGATGGAGT TTCAGAAGAT CATCAGCCAC TTCCACAGCC ACACTAGTAT CAGTTTCCAA GGAATTGAAT TTTGTAGAAC
CAACTGTCAC TGCTTCGCAG ACAGTGCAAG CTGACACGGA TGATCAGAAT GAGCAAAGGA AGCATGCCAT GGCTGTGGCT
GCTGCCACCG CAGCAGCAGC TGATGCTGCG GTGGCAGCTG CTGAGGCTGT AGCTGTTGTG ATCCGTTTGA CTTCTGCTTC
CAATGCAACA TCTAAAAGCA TTAAAGAGGC TGCTGCCATT AAAATCCAAT CAGTCTTTCG GTCTCATTTG GCAAGGAAAG
CATTGTGCGC TCTAAGAGGA CTGGTGAAGT TGCAGGCACT GGTAAGGGGT CATTTGGTGA GAAAACAGGC CAAGGAAACA
CTGAGATGCA TGCAGGCTTT GGTGACGGCA CAAGCTAGAG CTCGTATTCA GAGGATCCGA ATGGGTTCAG AAGGAATTCC
TAATCAACAA CAAAGAAAAG CCACAGATGA TGATCTGTTC AGGCAAATAT ATAATGAAAT GGAGAGAGGC TTGGAAGACA
ATATCAAGAT TGTTGAGATG GATGTGGGTG AAACAAAAAG TGATTGCAGA AGTAGAAGCA GCAGTGTATA TCATCATGGG
CATCAAGAAC AGCATGACCA TAGATTTTCC ACACATTATT CAACAAATGG TTTCTACTCA AAGGAAGAAA ACTACAAGGT
GTCACCAGCT CCATCAGCAT TGACAGAGTT GAGCACAAGA GAATGCAGTG GCCATTTTGA GGACTGTTTC AGCACAGCCC
AAAGCAGCCC TCAGTTCCAC TCTGCTGTGT CAAGAACAGA AAATTCAAAG CACCTTTTTT CTTTTCCAAG GCCAGCTTAT
GCAGAGTCTA TGTGCGATGA CTACCCTCTG TTTCCAAATT ACATGGCTAA CACTGAATCA TCAAGGGCCA AAGTCAGATC
GCATAGTGCA CCGAAACAAA GACCCGATTC ATTTGAGAGG CAACCAAGCC GCCGAAGAGC TTCAGTAGAG GGAAGAAATG
TCCCAAGGCC AATTAGGATG CAAAGGTCAT CTTCACATGT GAGTGCCACT GCTCAAAACT ATCAATATCC TTGGTCAATC
AAGCTTGACA GATCCGCAGT TTCACTCAAA GACAGCGAGT GTGGCTCTGC AAGTACAGTG CTCACTAACA CTAATTATTG
CAGATCTCTT GTTGCATTTG ACGTGAGTAC TTTCCGTTCT CGCACTCATA CCATAAATTT TGTCATAAAC TCGAATACTA
AAGTAGATAT AAACAAGAAA ATTAAGAGTA ACCATGTTTG CTGTTTAATA ATATACTATG TGTATTCTTA ATATCGGTTT
GTAACATTGT TGGTCTGACA ATGTTTTTTC GATTGACTGC AGCCACGTGG AGATAGGTA

>Vigan.08G068300.01
ATGGGGAAGA CGGGCAAATG GCTTAGAAAC TTGTTGACCG GTAAGAAAGA CAAGGAAAAA GAGAAGGAAA AATCTACATC
TAACCTGAAT TTTGCTTCAA ATGGAACAGA AAACTCAGCC ACTCCAACTT CCACAACCCC AAAGGAGAAA AAGAGATGGA
GTTTCAGAAG ATCATCAGCC ACTTCCACAG CCACACTAGT ATCAGTTTCC AAGGAATTGA ATTTTGTAGA ACCAACTGTC
ACTGCTTCGC AGACAGTGCA AGCTGACACG GATGATCAGA ATGAGCAAAG GAAGCATGCC ATGGCTGTGG CTGCTGCCAC
CGCAGCAGCA GCTGATGCTG CGGTGGCAGC TGCTGAGGCT GTAGCTGTTG TGATCCGTTT GACTTCTGCT TCCAATGCAA
CATCTAAAAG CATTAAAGAG GCTGCTGCCA TTAAAATCCA ATCAGTCTTT CGGTCTCATT TGGCAAGGAA AGCATTGTGC
GCTCTAAGAG GACTGGTGAA GTTGCAGGCA CTGGTAAGGG GTCATTTGGT GAGAAAACAG GCCAAGGAAA CACTGAGATG
CATGCAGGCT TTGGTGACGG CACAAGCTAG AGCTCGTATT CAGAGGATCC GAATGGGTTC AGAAGGAATT CCTAATCAAC
AACAAAGAAA AGCCACAGAT GATGATCTGT TCAGGCAAAT ATATAATGAA ATGGAGAGAG GCTTGGAAGA CAATATCAAG
ATTGTTGAGA TGGATGTGGG TGAAACAAAA AGTGATTGCA GAAGTAGAAG CAGCAGTGTA TATCATCATG GGCATCAAGA
ACAGCATGAC CATAGATTTT CCACACATTA TTCAACAAAT GGTTTCTACT CAAAGGAAGA AAACTACAAG GTGTCACCAG
CTCCATCAGC ATTGACAGAG TTGAGCACAA GAGAATGCAG TGGCCATTTT GAGGACTGTT TCAGCACAGC CCAAAGCAGC
CCTCAGTTCC ACTCTGCTGT GTCAAGAACA GAAAATTCAA AGCACCTTTT TTCTTTTCCA AGGCCAGCTT ATGCAGAGTC
TATGTGCGAT GACTACCCTC TGTTTCCAAA TTACATGGCT AACACTGAAT CATCAAGGGC CAAAGTCAGA TCGCATAGTG
CACCGAAACA AAGACCCGAT TCATTTGAGA GGCAACCAAG CCGCCGAAGA GCTTCAGTAG AGGGAAGAAA TGTCCCAAGG
CCAATTAGGA TGCAAAGGTC ATCTTCACAT GTGAGTGCCA CTGCTCAAAA CTATCAATAT CCTTGGTCAA TCAAGCTTGA
CAGATCCGCA GTTTCACTCA AAGACAGCGA GTGTGGCTCT GCAAGTACAG TGCTCACTAA CACTAATTAT TGCAGATCTC
TTGTTGCATT TGACGTGAGT ACTTTCCGTT CTCGCACTCA TACCATAAAT TTTGTCATAA ACTCGAATAC TAAAGTAGAT
ATAAACAAGA AAATTAAGAG TAACCATGTT TGCTGTTTAA TAATATACTA TGTGTATTCT TAA

>Vigan.08G068300.01
MGKTGKWLRN LLTGKKDKEK EKEKSTSNLN FASNGTENSA TPTSTTPKEK KRWSFRRSSA TSTATLVSVS KELNFVEPTV
TASQTVQADT DDQNEQRKHA MAVAAATAAA ADAAVAAAEA VAVVIRLTSA SNATSKSIKE AAAIKIQSVF RSHLARKALC
ALRGLVKLQA LVRGHLVRKQ AKETLRCMQA LVTAQARARI QRIRMGSEGI PNQQQRKATD DDLFRQIYNE MERGLEDNIK
IVEMDVGETK SDCRSRSSSV YHHGHQEQHD HRFSTHYSTN GFYSKEENYK VSPAPSALTE LSTRECSGHF EDCFSTAQSS
PQFHSAVSRT ENSKHLFSFP RPAYAESMCD DYPLFPNYMA NTESSRAKVR SHSAPKQRPD SFERQPSRRR ASVEGRNVPR
PIRMQRSSSH VSATAQNYQY PWSIKLDRSA VSLKDSECGS ASTVLTNTNY CRSLVAFDVS TFRSRTHTIN FVINSNTKVD
INKKIKSNHV CCLIIYYVYS *