GBrowse Details

Vigan.08G050200.01

Basic Information:
Name: Vigan.08G050200.01
Multiple alignment
Variant Information
Position: Chr08:3896956..3901366 (+ strand)
Length: 4411
Functional Information:
Description: Similar to ATP-dependent Clp protease proteolytic subunit. [V7BC00, Phaseolus vulgaris]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: serine-type endopeptidase activity (GO:0004252)
InterPro: ClpP (IPR001907)
Clp protease proteolytic subunit /Translocation-enhancing protein TepA (IPR023562)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:87.08,59.60,58.74,221.46,25.70,36.50,22.71,52.90
Arabidopsis thaliana homolog: AT1G49970.1
Automatic updates:
Name: BT095788 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-25G16 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3896956..3897149 (+ strand)
Length: 194
Type: five_prime_UTR
Position: Chr08:3897150..3897333 (+ strand)
Length: 184
Type: CDS
Position: Chr08:3898123..3898235 (+ strand)
Length: 113
Type: CDS
Position: Chr08:3898390..3898590 (+ strand)
Length: 201
Type: CDS
Position: Chr08:3898714..3898818 (+ strand)
Length: 105
Type: CDS
Position: Chr08:3898913..3898975 (+ strand)
Length: 63
Type: CDS
Position: Chr08:3899109..3899220 (+ strand)
Length: 112
Type: CDS
Position: Chr08:3900166..3900227 (+ strand)
Length: 62
Type: CDS
Position: Chr08:3900323..3900511 (+ strand)
Length: 189
Type: CDS
Position: Chr08:3900590..3900673 (+ strand)
Length: 84
Type: CDS
Position: Chr08:3900674..3901366 (+ strand)
Length: 693
Type: three_prime_UTR

>Vigan.08G050200.01 class=Sequence position=Chr08:3896956..3901366 (+ strand)
AGATTAAGAG GTATTAAGAT TATGAAAAAA ACAGAATAGT GTTTATAACC CGACCCGTTT ACCACAAGAA GTGGATAGTG
GCTTCTAGCA CACCTATCTT CCTCGCCGTT GGAACCAAAA CTATATTTCT GGTGTCATAC CCTTCACCCC TTCACATCAA
ATTTTGAAAC TTTGTTTCCA ATTGCGTGTA CCCAATGTCC TCTTCTCTCT CCCCACCACT TTCTGGGTCC TTCATCCACG
ATTCTTCGTT CCTCCGTGGA ACAAAGCTTT TTCCCCTTTC TCGAAGAGTG GTACCACGCG GCTTCAGCTC TTTCTCTGCT
AAGTGCTCCC TCGACCACGT CCCCAAACAG TTCAGAAAGG AAAATCTCGC AGATGGATGT TAGTTTTTAT ACCTTTCGTT
CCTTCTCTTT TGTGTTTGAT GATAATTTTC TCTGTTCGAT TTAGATTAGG CCAAAGAAAA AAAAAACTTG AATGTGTTTT
ACAGGAAAAG TTAGAGCAGA AAAATTGAAG AAGTTGGGAT TTTTAATCTG GTTATGAATT AGTTTAGTGT TTTTTATGTG
ATTTAGAATT GAACTGTGTG CGATTGGTTA CTTACCCCCT TAGAAAGGTT TAAATACTTA AAATAAATCT CACTTTACCT
TCCTATTTTT TGTCCAATCT CGTAAAGTTT TCAGGGGCAT GAACCACAGG TCCTTAAATT TTGAGACAAA ATGAAGGTCA
TATTTATTTC TCCCCTAAAT ACCAAATGCA TATAGATGTG TCTTTTGAAA TTTATTTGTA GAACAGATAG TGAATTATGT
GCATAATTTG TAGGAAAATA AAATAAAGAG ACACTATGAA TTCTTGTAGT ATACACTAGG AGAAACAGCC TTGGGCAAGA
CTATGTGAAG TCTTGGTTGG CTATCAAATT AACAATATGC GTCTCCGTTT TCAGTTTTGA CTGGTTTTCA CATTCTTGGT
GTTTCAAAGT GTTATAGGCA AACATAGGTT TTAAAGGTTG TTTATAAATC ATAAAGCTTC AAACTCGTGC TCTTAGATTA
ATTTGGATGA AATTTTCTGG ACAATTTTCC CAAATAAAAA ATCTTAATTT TTTTTTTCTC AAGTTCAGTT GAAAGGTTTA
AAAATTTGGT GCCCAACCTT TAGTTTTATT TTGTTTATCA TATGCAGTGA CGCAAAACTA CAAGAACGTA CCTCAATATC
TATATGGCCT TACACCTTCA CAAATGGACA TGTTCATGAC AGGAGATGCT ATCAGCGGGC AAACTGCAAG AGTTACAGAG
GTTCTCACCA TATATATTCT TCATACTGTC TAACTTTCTG TGATGTTATA ATAGCAAATA TACTAAACTG TAACCTAATT
TTGCAAAGCA CCCAGATTTT ATCACGGCTG ATAAGACTAT TCAAAACTGC TCTTAATTTT AATCATTGTG ACAGGAAAGC
ATCTCATCTG CCAAGAATTA TATAGATAAT GGTGGAACGT GGAGTCTATC TGGCATGGGG AAAAATGATG CTTCAAGATA
CAGCATGAGT GCTAGAATGT ATCAAGGAGG TTGGGGAAGT GAAAGGCCAC CAACTGCTCC ACCAGATCTG CCTTCTTTGC
TTTTGGATGC TCGAATATGC TATCTGGGTA TGCCGGTAAG CCTCATCCTG ACGGCTTGTG TTTTTAGCTC GCCACCTTTC
GTATATGGAT AAAATACCTC GTATCTTTCA TGCCCATCTT TTTTATGTTC CTCTGTAAGT CTCTATAAAT TTTTACAGAT
TGTTCCAGCT GTGACGGAAC TTATTGTTGC TCAATTCATG TGGTTGGATT TTGATAACCC AACCAAACCT ATTTACTTTT
ACATTAATTC ATCTGGAACT CAGGTAAGTG TTATAACCAT TTTCTAACAT TTTTCCTTGT GATGTATGAG GTGCTGATTT
ATATAATTGC TTTTTTTTAC CATTTTTTCC TGTTCAGAAT GAGAAGCATG AGACAGTGGG ATCAGAAACT GACGCATATT
CCATAGCTGA TATGATTTCT GTAAGTTTTA TCACGAATCA TGTGCCAATC CTACTGCTCC TGCCCTACCA AGGCTGAGAC
ATGATTTTCC TCTTTGAACT ACTCTTTTGT AACTCTTGCT TTTTAATTAA TCTTTTTTTT TTTTTGCTTG AAGTATGTCA
AAGCAGATGT GTATACTGTG AATTGTGGTA TGGCATTTGG TCAGGCAGCA ATGCTTCTGT CTCTTGGAAC AAAGGGTTAT
CGTGCGGTAC AACCAAACTC ATCTAGTACG AATCACATCT TCGCAAACTT TTGAAAAAAA TTGCTTTCAC TTATTTGTGT
TTTTTTTTTG GAACTTCTGA CACAACTATA GTATCCGATT AATCAGTATA TTTGAAGAAT AGACAAGGGG TTACTGATTT
ATAATTTTCC CATTATCTCT ATTGTCATCA CATATTACAC TTTTTGATCA ACTGGCTACT AATATGCTTG TTAAGAAGTA
TTTTCCGGAA TATCAGTTTA TCGAACTCTA GTTCTTAGTA TCCTTAGGGC ATGGATTGTA GACTTACGAT CTGTGTGAAG
CCCAGTACTC TGCATTGAAA CTGTTGGGTT GCCATTGTTG TGATTAAAAG AAACCCTAAT TTTCAGGGGC CTAATAAAAG
AATTTCGATC TTTATGTAAT GCTACAATGC TTTGTGCACA AACGTGGCCT ACATGTTCAT GGAATGAAAG GCTGCAGCCA
CAGCAGAACG ACTTATTAGT CATGTTTCTT TACCATTGTT GTGTGGGCTT TGTATTATTT ATTAGTCATG TTTCTTTACC
ATTGTTGTGT GGGCTTTGTA TTATTTATTC ATCAAGCACA AGTATAACCT ATTTTCCTTC ATATTTTGAC ACACTATGGT
ATTGATTCTG GCCACACATA AAATATAGTT CAGGAAAACA TAGAAAAATG TCTTGATTGG ATTGAATTTT CGTAGAAAGC
CTTCTTCTGT ATTGGCTATA GAGTTTCTTT CCGCCCTTCA ACGCTGAATT GCAGAAGGTA TATTTTTTTC TGACCCGAAA
TTTCTGCATA AATAGGGATA TTTCTTCCTG TCAGTTGGTA GTTTTGATCA TTGACAAGGT AGAAAGATAG CTGTTCGTAT
GCTCTGAATA AATTATGTGG AATATAGGGT GTATAAATAA ACTATGTCTT TAGCATTGGC GTACCGAGGA TTAACTGTTT
GCTATTGCAG CAAAATTATA TCTCCCAAAG GTCAATAGAT CAAGTGGTGC TGTTATAGAC ATGTGGATCA AGGTACTGTC
TACCTGTTTG TATGTTCTCT TCTCTATATT CTCTCCATTA TTTTAGACAC TATATTTATA TCAATTATGT TGGCAAAACA
CATACAGGCA AAAGAGCTTG AGGCAAATTC GGACTATTAC ATTGATCTGT TGGTAAAAGG GACAGGGAAA TCAAAGGAAG
AAATTACTAA AGATGTTCAG AGGCCTAAGT ATCTTCAAGC ACAGCAAGCT ATAGACTACG GACTTGCTGA CAAAATGATT
CAGTCAAGTT CAACGGATTC TGCATTTGAG AAGCGGGTAA TAATTATTTC TATTTACTAT TGATATTCTC TTTAAACATT
TATATAATAT ACTTACGATT ACTGTCTGGA TCAGAACTAT GAGGAAATTC TTGCTCAATC AAGTATGAGG AATCAAGGTG
GTGTCGATCC TCAAGCGTCT CCTTCGGGAT TCAGGTAATC ACACAGCGAA AGGCCACTTA ATCGCTCCGA ATCCAATGCC
CTTCAATGCT ATATGGGTTT AAGTTGACGA CTGGTGTAAA GGTCCAGCAG CTATCTCATC AAAAGGCCAA ATTGGAAACT
TTCAACGGAG AGATATTATA TGAAAATTGT ATCTTGGCTG TTGGGTGACT TTTTCAATAC TTAAATTACA TATGCTTAGT
TTGAATAACT TAATGTAAAT ATTGATTGAG ACACATCATG TTTGCTCAGT AGCTGGCATT GTGTCCTTGA AAATTTTTGC
TTTGATTTTT CTTGTCCCAG ATTAACAATT TCGCAGTAGT TGTTTTGCAA TTAAGTGAAT GCATATGTGA CTTCAATTTA
TAATTTACAC TATACCTACT TGCACGAAGT GCACAGTTTG AAGAAAATCT AGAAAAACAG ACTATTAGTT TACTTGTTTT
TGGCATTCAC AAGAGGGAAG TGAAACACTA AATAAAAAAA GAAAACCCTG TCAGACATGG CCATCAAGAA TTACGCTGGA
GGATTGGGAT AGACTTTGGG CTTCGGCTTC ACCTCAATCT CGTTTACACT ACGGACAAAA ATAGCATCTG ATTCGTTGCT
GTGAATGCAA TGAACAAAGT TACTTAAACA AGCTCGTATA AGAGAGTCAG ATAGTTAGAT ACAGAACATA CCTTTTAGGT
CCTTCTTCGA A

>Vigan.08G050200.01
AGATTAAGAG GTATTAAGAT TATGAAAAAA ACAGAATAGT GTTTATAACC CGACCCGTTT ACCACAAGAA GTGGATAGTG
GCTTCTAGCA CACCTATCTT CCTCGCCGTT GGAACCAAAA CTATATTTCT GGTGTCATAC CCTTCACCCC TTCACATCAA
ATTTTGAAAC TTTGTTTCCA ATTGCGTGTA CCCAATGTCC TCTTCTCTCT CCCCACCACT TTCTGGGTCC TTCATCCACG
ATTCTTCGTT CCTCCGTGGA ACAAAGCTTT TTCCCCTTTC TCGAAGAGTG GTACCACGCG GCTTCAGCTC TTTCTCTGCT
AAGTGCTCCC TCGACCACGT CCCCAAACAG TTCAGAAAGG AAAATCTCGC AGATGGATTG ACGCAAAACT ACAAGAACGT
ACCTCAATAT CTATATGGCC TTACACCTTC ACAAATGGAC ATGTTCATGA CAGGAGATGC TATCAGCGGG CAAACTGCAA
GAGTTACAGA GGAAAGCATC TCATCTGCCA AGAATTATAT AGATAATGGT GGAACGTGGA GTCTATCTGG CATGGGGAAA
AATGATGCTT CAAGATACAG CATGAGTGCT AGAATGTATC AAGGAGGTTG GGGAAGTGAA AGGCCACCAA CTGCTCCACC
AGATCTGCCT TCTTTGCTTT TGGATGCTCG AATATGCTAT CTGGGTATGC CGATTGTTCC AGCTGTGACG GAACTTATTG
TTGCTCAATT CATGTGGTTG GATTTTGATA ACCCAACCAA ACCTATTTAC TTTTACATTA ATTCATCTGG AACTCAGAAT
GAGAAGCATG AGACAGTGGG ATCAGAAACT GACGCATATT CCATAGCTGA TATGATTTCT TATGTCAAAG CAGATGTGTA
TACTGTGAAT TGTGGTATGG CATTTGGTCA GGCAGCAATG CTTCTGTCTC TTGGAACAAA GGGTTATCGT GCGGTACAAC
CAAACTCATC TACAAAATTA TATCTCCCAA AGGTCAATAG ATCAAGTGGT GCTGTTATAG ACATGTGGAT CAAGGCAAAA
GAGCTTGAGG CAAATTCGGA CTATTACATT GATCTGTTGG TAAAAGGGAC AGGGAAATCA AAGGAAGAAA TTACTAAAGA
TGTTCAGAGG CCTAAGTATC TTCAAGCACA GCAAGCTATA GACTACGGAC TTGCTGACAA AATGATTCAG TCAAGTTCAA
CGGATTCTGC ATTTGAGAAG CGGAACTATG AGGAAATTCT TGCTCAATCA AGTATGAGGA ATCAAGGTGG TGTCGATCCT
CAAGCGTCTC CTTCGGGATT CAGGTAATCA CACAGCGAAA GGCCACTTAA TCGCTCCGAA TCCAATGCCC TTCAATGCTA
TATGGGTTTA AGTTGACGAC TGGTGTAAAG GTCCAGCAGC TATCTCATCA AAAGGCCAAA TTGGAAACTT TCAACGGAGA
GATATTATAT GAAAATTGTA TCTTGGCTGT TGGGTGACTT TTTCAATACT TAAATTACAT ATGCTTAGTT TGAATAACTT
AATGTAAATA TTGATTGAGA CACATCATGT TTGCTCAGTA GCTGGCATTG TGTCCTTGAA AATTTTTGCT TTGATTTTTC
TTGTCCCAGA TTAACAATTT CGCAGTAGTT GTTTTGCAAT TAAGTGAATG CATATGTGAC TTCAATTTAT AATTTACACT
ATACCTACTT GCACGAAGTG CACAGTTTGA AGAAAATCTA GAAAAACAGA CTATTAGTTT ACTTGTTTTT GGCATTCACA
AGAGGGAAGT GAAACACTAA ATAAAAAAAG AAAACCCTGT CAGACATGGC CATCAAGAAT TACGCTGGAG GATTGGGATA
GACTTTGGGC TTCGGCTTCA CCTCAATCTC GTTTACACTA CGGACAAAAA TAGCATCTGA TTCGTTGCTG TGAATGCAAT
GAACAAAGTT ACTTAAACAA GCTCGTATAA GAGAGTCAGA TAGTTAGATA CAGAACATAC CTTTTAGGTC CTTCTTCGAA

>Vigan.08G050200.01
ATGTCCTCTT CTCTCTCCCC ACCACTTTCT GGGTCCTTCA TCCACGATTC TTCGTTCCTC CGTGGAACAA AGCTTTTTCC
CCTTTCTCGA AGAGTGGTAC CACGCGGCTT CAGCTCTTTC TCTGCTAAGT GCTCCCTCGA CCACGTCCCC AAACAGTTCA
GAAAGGAAAA TCTCGCAGAT GGATTGACGC AAAACTACAA GAACGTACCT CAATATCTAT ATGGCCTTAC ACCTTCACAA
ATGGACATGT TCATGACAGG AGATGCTATC AGCGGGCAAA CTGCAAGAGT TACAGAGGAA AGCATCTCAT CTGCCAAGAA
TTATATAGAT AATGGTGGAA CGTGGAGTCT ATCTGGCATG GGGAAAAATG ATGCTTCAAG ATACAGCATG AGTGCTAGAA
TGTATCAAGG AGGTTGGGGA AGTGAAAGGC CACCAACTGC TCCACCAGAT CTGCCTTCTT TGCTTTTGGA TGCTCGAATA
TGCTATCTGG GTATGCCGAT TGTTCCAGCT GTGACGGAAC TTATTGTTGC TCAATTCATG TGGTTGGATT TTGATAACCC
AACCAAACCT ATTTACTTTT ACATTAATTC ATCTGGAACT CAGAATGAGA AGCATGAGAC AGTGGGATCA GAAACTGACG
CATATTCCAT AGCTGATATG ATTTCTTATG TCAAAGCAGA TGTGTATACT GTGAATTGTG GTATGGCATT TGGTCAGGCA
GCAATGCTTC TGTCTCTTGG AACAAAGGGT TATCGTGCGG TACAACCAAA CTCATCTACA AAATTATATC TCCCAAAGGT
CAATAGATCA AGTGGTGCTG TTATAGACAT GTGGATCAAG GCAAAAGAGC TTGAGGCAAA TTCGGACTAT TACATTGATC
TGTTGGTAAA AGGGACAGGG AAATCAAAGG AAGAAATTAC TAAAGATGTT CAGAGGCCTA AGTATCTTCA AGCACAGCAA
GCTATAGACT ACGGACTTGC TGACAAAATG ATTCAGTCAA GTTCAACGGA TTCTGCATTT GAGAAGCGGA ACTATGAGGA
AATTCTTGCT CAATCAAGTA TGAGGAATCA AGGTGGTGTC GATCCTCAAG CGTCTCCTTC GGGATTCAGG TAA

>Vigan.08G050200.01
MSSSLSPPLS GSFIHDSSFL RGTKLFPLSR RVVPRGFSSF SAKCSLDHVP KQFRKENLAD GLTQNYKNVP QYLYGLTPSQ
MDMFMTGDAI SGQTARVTEE SISSAKNYID NGGTWSLSGM GKNDASRYSM SARMYQGGWG SERPPTAPPD LPSLLLDARI
CYLGMPIVPA VTELIVAQFM WLDFDNPTKP IYFYINSSGT QNEKHETVGS ETDAYSIADM ISYVKADVYT VNCGMAFGQA
AMLLSLGTKG YRAVQPNSST KLYLPKVNRS SGAVIDMWIK AKELEANSDY YIDLLVKGTG KSKEEITKDV QRPKYLQAQQ
AIDYGLADKM IQSSSTDSAF EKRNYEEILA QSSMRNQGGV DPQASPSGFR *