GBrowse Details

Vigan.07G188800.01

Basic Information:
Name: Vigan.07G188800.01
Multiple alignment
Variant Information
Position: Chr07:26144437..26150245 (+ strand)
Length: 5809
Functional Information:
Description: Similar to SURP and G-patch domain-containing protein 1-like protein-like isoform X3. [XP_006585346.1, Glycine max]
GO: Biological Process: RNA processing (GO:0006396)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: RNA binding (GO:0003723)
InterPro: SWAP/Surp (IPR000061)
G-patch domain (IPR000467)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:162.19,118.72,57.72,74.14,51.15,29.10,60.48,58.60
Arabidopsis thaliana homolog: AT3G52120.1
Automatic updates:
Name: BT099051 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-26F12 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:26144437..26144531 (+ strand)
Length: 95
Type: five_prime_UTR
Position: Chr07:26145652..26145693 (+ strand)
Length: 42
Type: five_prime_UTR
Position: Chr07:26145694..26146096 (+ strand)
Length: 403
Type: CDS
Position: Chr07:26147627..26147753 (+ strand)
Length: 127
Type: CDS
Position: Chr07:26147848..26147954 (+ strand)
Length: 107
Type: CDS
Position: Chr07:26148525..26148683 (+ strand)
Length: 159
Type: CDS
Position: Chr07:26148944..26149078 (+ strand)
Length: 135
Type: CDS
Position: Chr07:26149208..26149381 (+ strand)
Length: 174
Type: CDS
Position: Chr07:26149734..26149912 (+ strand)
Length: 179
Type: CDS
Position: Chr07:26150031..26150057 (+ strand)
Length: 27
Type: CDS
Position: Chr07:26150058..26150245 (+ strand)
Length: 188
Type: three_prime_UTR

>Vigan.07G188800.01 class=Sequence position=Chr07:26144437..26150245 (+ strand)
CAACTATCTA TTTCGCTAGG TTTGTACAGC GTTTGGGGCG AAAAGTTCAG CCTTTTCCGA TTTGCATCAA ATTCAACACA
CAGCACCATC GTTTGGTCAG TCTTTTTTGC TTCTGCTTCC AATCTAGGGT TTTCTCTCTC AATCTTTTCT TATCTTCAAT
GGATGTGGTT CGATTTAAAG GGATTTAAGG CGGTGCGGGA ATCGAACTCG TAATTAGGGT TTGCCTTTTG GGATCATCTC
ATGTGAATCG ATTCTGTTAG ACGGTGTTGT TGGGTTTTCA TTCGGTGCGT TTTTCATCTT TGCTAATGTT TTCTATCAAA
TCTATCGCTC GACATAATGA TCTCAATCCG TTATCTTGTC TTTCACATGT GATAGATAGT CCCTAAAAAC CTGTTTAAGT
TTGCTATATA TTTTTTCCTG AATCTGTTAT GGAAGACTTA AGGTCATTGT ATGCAAGACT TAGGTTATCA TCATAGAGAT
TCATATGTTC TGTCCCCCTA TTTTTGTCCC CCTGGTTAAA TGCTGAAGGT CTAAGAAACA ATATGAACTA ACATATATAG
GAGAGAAACT ATCATATATA GTGAGCGTGC AAGAGATGAG AATAATAAGT CTTGGCCATA CAATTGTACA TGGACGGTCG
AACATGTTTT AGTTAATTTT AATCTTAGCT ATCCATTTGA ATTACACAGC TGAAATTTGC TTGTCTTACT CTTTCCTCTG
ATCTTCCTGA CGTGCCAGTT CGGTCTGAGG AACACATTAA AATTTGTGGT TTGATGTTGT TTCTTTCTTA CGAAGTCCTG
CTTCTTATGA ACAACCCTTT TTCATTGGAA GGGTTTCCTC TTTTGATTTA TATATAGATT GATGTGATAT AGTCACAATA
TGCATGATAA AATGATTGCT CTTGTATGGA CTTGTTTACC TTGTTTTTGA ATAATTTATG GTTGTGCTTA TTGTTAATGT
CATCAGGCTT GACATCGAAA TTATAATTCT TCACATGTTT AGATTTATAT CATGTTTGGC TACCGCTTCT TCATGACAAA
AAATGGCTTT TGTCAAAAGC TCTTATCGAA AGCTGCAAAA AAGAGATTTT CTTAAATTAA TTGAACCAAA CATGTATTTA
AACTATACCA TGTATATGTG TATACAAAAA ATAAAAGTCA GATTTTAAAG TCAACTGCAT CATCTAAAAG GCTTTAAAGC
TTGCTTGTCA AACAGTGGAC TGGGTTGCTG TAAACTGCAT TGTTTGGCTG TTAGCTAATG GATAAGGGGG TGCCACCTAG
CCTATTCGTC AATGATGGTT CTTTCATGGA GAGGTTCAAG CAACTTCAAC AAGAGCAGGA GAAAGGGAAG AATGTCAAAT
TAGAGAATTC TAAACCAATT AAGGTTATTT CAGGGTCTTT GTCGCCCAAT CCCTCCATTA CCAAAACATC TGTGGACTCG
AAGGTTAATG ATACTAGGAA AACATCCCAG GGTGGTTCTG GTGGCAAACT AGCTTTCAGT TTAAAACAAA AGTCAAAGCT
GGTACCACCC CCTGTTAAAT TGAGTGCCGA TGAAGATGAA GAAGAAACAG AAGCTGGGTA TATTTCAAAT GATGCACCAC
TAAAACGACA AAAGTTAGGC CAGGATGGCA TTGACCAATC ATCAAGACAA CTTGATGTTG GTAATTACTT CTTAAACTTT
CTAGTTTTTG CAGATAGTTG GCTCATGATT GGTATTCCTA CTTATTGTTG TTTTAAAATC AGAATAATCA AATAGCATGT
GATCCATAAT GCCAGCCTTT ATATGTCTTG CTATTTTTTC AATGAGATCT TGTTATTCAC TTATTACATT TTTTAGTTCA
TTAATGTGTG CTGAAGACCT TCTATGTGTA TGTCGTTGTG AATGTGAATT TTCGTATGTA AATATATCTT AAATACTAAC
CTGTCTTCTG ATTTTCTTTT CTTTCCTACA TTTATTGTTA TTTTTTTCTG TATCCAACTT TTGTATATCA TCATAACTTT
CTGTTAGATA CATAAACTAT TTATGAGGCT TTCCCTAGCA TCTTTGAGCT TTTGGGCTTG ATGGTCTTTG CTGTATCAGA
ATCTCTACTC AAGTTATCAA GAGATCAGTC CTTGCCAATT CTTACCAATT CTGAGTAAAA GTTCAATTTC AGCACATGGT
AAGGGCCAGC ATTTGCATTG TTCATGTGTC AGGCCCCAAG GTCTATGGGA GGGGGCATTA GATACAAAAT AAATTATGGG
ACTTTGCCTA TGGCTTAAGC AGCGTTGGTT GTTGACAGTT TTGTTACTGT TTCGAACACA ATCTTTAAAT TATATATTTC
TTTTTCTCTT TGATGTGAAT ACAACATTGC CTGCATCTGT GAGATTTTCC TAAGATTTAG TGTCTTCCAC AAACTATTCT
CAATGTGAGT AATAACCAAT TTTTTTTCAG GTCTTTTTGT AAAAAAAAAA ACCTTTTTTC CAGGCTGTTG AAAACAAAAT
TCTAAGTTTG ATTCTTTATT TTGAAAAGTG TTTTTGTGTA GCTTCTCAAA AAGGAGCTGA AATTAGAAAT ACGTTTTAAA
ACAAAAAAAG GTTATATAGT TTTTAACCAG AAAATACTAT TTTTTGCACT TCATAAACTT TGTATAAGAT AAAATCACTA
TTTTATACAT TTTTAAAACC GATTTTTTAA ATCATAAATA AACAGCTGGC CCTTGTTCTG TTTACTTGGA TATGGAAGAA
AGGGGGACAT AAGTGTAATA GCATTGAAAT AGGGACTTGT TCACCTGTAC TCATCCTTTG GGTCACAAAA GGTGTAGTGG
AGGACTAAGA AGGGTGAAAA TCATTGTTTG GTCAGTCTTT AACATTTCTG AACATTCCCC CAGAGCTAAT TTAGTTGAAG
GAAAATGCCA GTTGGCATAC AGTTGCAATT ACACCGTTTG CCCCCTTTTT TTCTTCACGT GAAAATAGTC ATCCTCTACA
ATACCTGCTG TTTCATTGTT GAAGAGGTCC TCTCCGTGTA TACCTTCTTT GCTCATTAAA GTGGCATGCA GCAAAGAGGA
GAAAATGTCT TGAATATTTT TGTCTCATGA ATGCAGCTTA TTCCCCAAGT ACCTATCAAG AAATGGTGTA TTGGCAGGCC
TGCTACAAGA CTAATTTGCA TTCCCTTGTT CATGCTCTCG GTATTAATCA GTTTTGTAAG TGATATGCAG CACCTCCTTC
CCCAAGTGAT CCTACAGTGA AGAAAGTTGC TGACAAACTA GCAAGTTTTG TGGCAAAAAA TGGAAGGCAA TTTGAGGATG
TTACGCGTCA AAAAAATCCA GGGGATACAC CTTTCAAGTA AGTATGAAAT CAACTTCTAA TCCTTGTTTA TTGATCATTT
ATATATGTGT TGTAATTGAT GATTATATTT GGTGCATTTT TTAATTTGCA GATTTTTATT TGATGAAAGA TGTGCTGAAT
ACAAGTACTA TGAATATCAG CTGGCTCAAG AAGAAAAGGC TCTTGCACAG ACAAGGGAAT CACAGGTGCC TCGTAATGGT
TAGTATTTCA GTATATTTTC ATATTTTTAG ACCAATTTAC AATGTATTAA GTTTCAGTAT ATTTCCATAA TTTTAGTTGC
TTTTTCAGTC TAGGAATTGT AAACCTTAAT TTTCTAAATT TAAAGTTTTC ATCCATCCAT TTTTATAGTA TTTTCATTTA
AACTGCATTG TTTGGTTGAT GATCATTGTT ACAGTATTTG AATATATTTT CATGATTTTA AACCATGTTC TTTAGGTGCT
TCAGTAGTTG CTTCATGAAT ATATTTATGT TTGAGATGAT ATCTTAAGAT TATGATTTAA ATTTCTATGG GTGTTACATG
GTAACTGTTA AGTCTCAGAA CTGCAATTGT TTTCTGTGGT GTCTTTGTTG ATACTAATTT GCGTTTTAAC TACACATGAT
ATATGTTTGA AGTGGTAACA GTATATGTGA TATATCTCCT AGTAATGTTG CTTAGTTCAT CCACTAGCCT GCAGATTTGA
TAAGTTTTGA TCTCTCTCTG ATGTGTAGAA TATGCTTTCT CATTTACCTC TTGTATATTT TGGTTTTTCA TGTGGTGGTT
TTATTCAGGG GGAACAAGTA CTTCATCTTC CAAACCCACT AGTGGTCATC AAAGATCATC TCAGCAGCTT ACATCCTACC
AAATTCCTGC ATCTGCTTTA TATGAAAGTG CGGACAATTC AAGAGCTTCT GGATCTTCAA TTCAAACATC TCCACTAGGA
ATGAGTGGTA ATTGCGATTT TGATGTGTAT TCTTTTTATT GTTTCCACAG CTGCTGTCTG TTTGATCTCT ATTTTTTTTG
TCAATTTGAT AAAGTTTAAT GTGTGTTCAA TGGAAGTCAT GATTTTGTTC CACTGCATTT CATTTTATCC TGAAAGTGCT
TAAAAATATC TGAACTACAC ATTCACTATT ATTTGTTATT ACTCTTCTCA TGGACTTGGT GTGCAACCTA CTCTTGTTGC
TATTTCCTTT GTTTATTTCT GCTGCAGAAG AGCCCAGTGG TTCATCAAAT GCTGATTCTT TGGCACTAAT GGAGTTCTAC
ATGAAGAAAG CTGCACGGGA AGAAAAGTAT AAACAACCTA AGTATTCAAA AGATGAGATG CCCCCTCCTG CCTCTCTTCA
AGGTTAAAAT TGATTTGTTA CTGGCGTTTT TTGATCAGAA TATTCATTTA GTTAAAACGG TTATTTTTAT GCACTTATCC
TTTTAATGGA ATAATCTATT GATTCTTTCG TTTTGGGTGA CACGTTACCA GGCAAAAAAG GCCATCACAT GGGTGATTTC
ATACCTCCAG AAGAACTTGA GAAGTTCTTG GCCAGTTGTA ATGATGCTGC AGCACAGAAA GCTGCAAAGG AGCATGTAGA
GAGGTCTAAG ATTCAGGCTG ATAATGTAGG CCACAGGCTC CTGTCAAAAA TGGGTTGGAA AGAAGGTGCT TTGTGCTTTC
CCAGTCTCAT TTTCAAGCTC TTGCTATATT CCATTGACTT GTGTCTAAAG GCATTTAAAA GCTGGACTCA TTCAAGCTGG
AACTTATTTT GAAGCTCCTT ATTTATTTTT TCTTGGGGGA AGTGTTTGGG CAAGCTATTT TTTCTTAAAA ATAGCTTACC
TTCGTTGTTA TCTTTGATGT GCAATGTGAA ACATACGAAT ACTAGGAATC TGCTGCAAAT TTGTCTTGTA TGAGTACACC
ATAGTGTTTT TAGAGTTGAT TGAAATTACA TAATTGTTGA TAATACATTA AACTTGCGTT ATTGTTGTTT CTTGTTCTAA
CAATCATTAA TTCCCAGGTG AGGGTCTGGG CGGATCCAGG AAGGGTATTT CAGATCCTAT CATGGCAGGT AATATTAAGA
AGAATAACTT GGGGGTTGGT GCTCAGGAAC CAGGGGAGGT GACTTCAGAG GATGACATAT ATGAGCAGTA CAAGAAGCGG
ATGATGCTTG GTTATCGTTA CAGACCCAAT CCTCTGGTAA ATAATGCTTG GAATCTTTTT TATTTTTTTC TATTGAAGTT
TCAGTTACTT GGTCAATATC AAGGTACTTT GCTTTGACAA ACTTTTTTTC ATGTTTTAAT TCTTTATTTT ACAGAACAAT
CCTCGAAAAG CTTATTACTG AACTTGACAA AGGATTTGCA AGTCTTTTCC TTGTGTTGGA TGAATTGATT TAGGGTTTTC
GTATTGTGTG TTGTAGTGCT TGTAAGACTT GGGGAGAAAA GAGGAGGAAG GGTTTAATGT TCGATACAAT CATATCTTTA
CCCGTCAAAA AATAATGGTT TCTTGTTATT TTCGATACAA TCATGTTTG

>Vigan.07G188800.01
CAACTATCTA TTTCGCTAGG TTTGTACAGC GTTTGGGGCG AAAAGTTCAG CCTTTTCCGA TTTGCATCAA ATTCAACACA
CAGCACCATC GTTTGTGGAC TGGGTTGCTG TAAACTGCAT TGTTTGGCTG TTAGCTAATG GATAAGGGGG TGCCACCTAG
CCTATTCGTC AATGATGGTT CTTTCATGGA GAGGTTCAAG CAACTTCAAC AAGAGCAGGA GAAAGGGAAG AATGTCAAAT
TAGAGAATTC TAAACCAATT AAGGTTATTT CAGGGTCTTT GTCGCCCAAT CCCTCCATTA CCAAAACATC TGTGGACTCG
AAGGTTAATG ATACTAGGAA AACATCCCAG GGTGGTTCTG GTGGCAAACT AGCTTTCAGT TTAAAACAAA AGTCAAAGCT
GGTACCACCC CCTGTTAAAT TGAGTGCCGA TGAAGATGAA GAAGAAACAG AAGCTGGGTA TATTTCAAAT GATGCACCAC
TAAAACGACA AAAGTTAGGC CAGGATGGCA TTGACCAATC ATCAAGACAA CTTGATGTTG CACCTCCTTC CCCAAGTGAT
CCTACAGTGA AGAAAGTTGC TGACAAACTA GCAAGTTTTG TGGCAAAAAA TGGAAGGCAA TTTGAGGATG TTACGCGTCA
AAAAAATCCA GGGGATACAC CTTTCAAATT TTTATTTGAT GAAAGATGTG CTGAATACAA GTACTATGAA TATCAGCTGG
CTCAAGAAGA AAAGGCTCTT GCACAGACAA GGGAATCACA GGTGCCTCGT AATGGGGGAA CAAGTACTTC ATCTTCCAAA
CCCACTAGTG GTCATCAAAG ATCATCTCAG CAGCTTACAT CCTACCAAAT TCCTGCATCT GCTTTATATG AAAGTGCGGA
CAATTCAAGA GCTTCTGGAT CTTCAATTCA AACATCTCCA CTAGGAATGA GTGAAGAGCC CAGTGGTTCA TCAAATGCTG
ATTCTTTGGC ACTAATGGAG TTCTACATGA AGAAAGCTGC ACGGGAAGAA AAGTATAAAC AACCTAAGTA TTCAAAAGAT
GAGATGCCCC CTCCTGCCTC TCTTCAAGGC AAAAAAGGCC ATCACATGGG TGATTTCATA CCTCCAGAAG AACTTGAGAA
GTTCTTGGCC AGTTGTAATG ATGCTGCAGC ACAGAAAGCT GCAAAGGAGC ATGTAGAGAG GTCTAAGATT CAGGCTGATA
ATGTAGGCCA CAGGCTCCTG TCAAAAATGG GTTGGAAAGA AGGTGAGGGT CTGGGCGGAT CCAGGAAGGG TATTTCAGAT
CCTATCATGG CAGGTAATAT TAAGAAGAAT AACTTGGGGG TTGGTGCTCA GGAACCAGGG GAGGTGACTT CAGAGGATGA
CATATATGAG CAGTACAAGA AGCGGATGAT GCTTGGTTAT CGTTACAGAC CCAATCCTCT GAACAATCCT CGAAAAGCTT
ATTACTGAAC TTGACAAAGG ATTTGCAAGT CTTTTCCTTG TGTTGGATGA ATTGATTTAG GGTTTTCGTA TTGTGTGTTG
TAGTGCTTGT AAGACTTGGG GAGAAAAGAG GAGGAAGGGT TTAATGTTCG ATACAATCAT ATCTTTACCC GTCAAAAAAT
AATGGTTTCT TGTTATTTTC GATACAATCA TGTTTG

>Vigan.07G188800.01
ATGGATAAGG GGGTGCCACC TAGCCTATTC GTCAATGATG GTTCTTTCAT GGAGAGGTTC AAGCAACTTC AACAAGAGCA
GGAGAAAGGG AAGAATGTCA AATTAGAGAA TTCTAAACCA ATTAAGGTTA TTTCAGGGTC TTTGTCGCCC AATCCCTCCA
TTACCAAAAC ATCTGTGGAC TCGAAGGTTA ATGATACTAG GAAAACATCC CAGGGTGGTT CTGGTGGCAA ACTAGCTTTC
AGTTTAAAAC AAAAGTCAAA GCTGGTACCA CCCCCTGTTA AATTGAGTGC CGATGAAGAT GAAGAAGAAA CAGAAGCTGG
GTATATTTCA AATGATGCAC CACTAAAACG ACAAAAGTTA GGCCAGGATG GCATTGACCA ATCATCAAGA CAACTTGATG
TTGCACCTCC TTCCCCAAGT GATCCTACAG TGAAGAAAGT TGCTGACAAA CTAGCAAGTT TTGTGGCAAA AAATGGAAGG
CAATTTGAGG ATGTTACGCG TCAAAAAAAT CCAGGGGATA CACCTTTCAA ATTTTTATTT GATGAAAGAT GTGCTGAATA
CAAGTACTAT GAATATCAGC TGGCTCAAGA AGAAAAGGCT CTTGCACAGA CAAGGGAATC ACAGGTGCCT CGTAATGGGG
GAACAAGTAC TTCATCTTCC AAACCCACTA GTGGTCATCA AAGATCATCT CAGCAGCTTA CATCCTACCA AATTCCTGCA
TCTGCTTTAT ATGAAAGTGC GGACAATTCA AGAGCTTCTG GATCTTCAAT TCAAACATCT CCACTAGGAA TGAGTGAAGA
GCCCAGTGGT TCATCAAATG CTGATTCTTT GGCACTAATG GAGTTCTACA TGAAGAAAGC TGCACGGGAA GAAAAGTATA
AACAACCTAA GTATTCAAAA GATGAGATGC CCCCTCCTGC CTCTCTTCAA GGCAAAAAAG GCCATCACAT GGGTGATTTC
ATACCTCCAG AAGAACTTGA GAAGTTCTTG GCCAGTTGTA ATGATGCTGC AGCACAGAAA GCTGCAAAGG AGCATGTAGA
GAGGTCTAAG ATTCAGGCTG ATAATGTAGG CCACAGGCTC CTGTCAAAAA TGGGTTGGAA AGAAGGTGAG GGTCTGGGCG
GATCCAGGAA GGGTATTTCA GATCCTATCA TGGCAGGTAA TATTAAGAAG AATAACTTGG GGGTTGGTGC TCAGGAACCA
GGGGAGGTGA CTTCAGAGGA TGACATATAT GAGCAGTACA AGAAGCGGAT GATGCTTGGT TATCGTTACA GACCCAATCC
TCTGAACAAT CCTCGAAAAG CTTATTACTG A

>Vigan.07G188800.01
MDKGVPPSLF VNDGSFMERF KQLQQEQEKG KNVKLENSKP IKVISGSLSP NPSITKTSVD SKVNDTRKTS QGGSGGKLAF
SLKQKSKLVP PPVKLSADED EEETEAGYIS NDAPLKRQKL GQDGIDQSSR QLDVAPPSPS DPTVKKVADK LASFVAKNGR
QFEDVTRQKN PGDTPFKFLF DERCAEYKYY EYQLAQEEKA LAQTRESQVP RNGGTSTSSS KPTSGHQRSS QQLTSYQIPA
SALYESADNS RASGSSIQTS PLGMSEEPSG SSNADSLALM EFYMKKAARE EKYKQPKYSK DEMPPPASLQ GKKGHHMGDF
IPPEELEKFL ASCNDAAAQK AAKEHVERSK IQADNVGHRL LSKMGWKEGE GLGGSRKGIS DPIMAGNIKK NNLGVGAQEP
GEVTSEDDIY EQYKKRMMLG YRYRPNPLNN PRKAYY*