GBrowse Details

Vigan.07G113700.01

Basic Information:
Name: Vigan.07G113700.01
Multiple alignment
Variant Information
Position: Chr07:10564235..10566639 (- strand)
Length: 2405
Functional Information:
Description: Similar to Uncharacterized protein. [B7FHX6, Medicago truncatula]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:83.47,42.45,41.10,55.72,43.05,68.75,44.00,42.09
Automatic updates:
Name: KT031121 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_83 bHLH transcription factor (Glyma13g36260.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:10564235..10564529 (- strand)
Length: 295
Type: three_prime_UTR
Position: Chr07:10564530..10564796 (- strand)
Length: 267
Type: CDS
Position: Chr07:10565067..10565229 (- strand)
Length: 163
Type: CDS
Position: Chr07:10565308..10565385 (- strand)
Length: 78
Type: CDS
Position: Chr07:10566066..10566128 (- strand)
Length: 63
Type: CDS
Position: Chr07:10566212..10566342 (- strand)
Length: 131
Type: CDS
Position: Chr07:10566343..10566639 (- strand)
Length: 297
Type: five_prime_UTR

>Vigan.07G113700.01 class=Sequence position=Chr07:10564235..10566639 (- strand)
GTGGGAAGTG GTTGAAGGTA GGATTTTGAT GGTGTAATTG GTTCATTGAT GTGTCATTAT GGTCACATCA TGGGTCACTG
TAGAAGCATA GCCATAGATT CTCCTTTTCG CAGAAGGCTC TCTTTTTCTC TCTACCCTCC AACGTGCTCT CTTCAACACT
GCACAACACC CATTTCAATT CCTTCTCTCT TTCACCATAT CTCCTCAACC CACACTCTCC CTTACAATCA CTTCAAAGGA
ACAAGAAACA AATAAATACT CCAAATTCAC AATTCTCCGG GAAAATCCCT ACACGCCATG GTTTCCCCGG AAAACAGCAA
TTGGCTCTTC GACTACCCGT TGATCGACGA TGACATTACT GTCGGAGACG GCTCCTTCAC CGTCTCCGCT TCCGCCTTCT
CATGGCCCCC GCCTCCCTCC AATGTCAGGT ACTATTTCAT TCCCCTAATT AGGGTTTCTG ATTCATTTTC ACTTCGCTAA
TTCGTGTTCT GGTGATGCTG TCTGCTTCTA GTGTTGAAAT TGATGCTTCA CTCGTTGATT CTGATGGCCT CAAAGACCCT
GCTTTGAAGA AGAGGTACAC AATTCCCCCC ACATTTTCTT TCGAATTATT TAAAGTTAAA GAAAGAAATA ATATAACTCA
TAAATAACAC CATGCAATTG GATCAATAGT GTGTGGTATT AATTTCAAGG CTGGTTCCTG AATTAGTTGG ATTGTTTTTG
GTAGAAGAGA GTTATGTTGT CAATCCAAAG AGAGGAAAAC TTAATCGCCA GTTTGCACTT TATTTCTTTT ATTTCTCAAT
TTCTGCTGTT TGGCGTGTGG TAGAGTCCAG CTTATTTACT TTGCGATTTT TTTTTCTTTT AGCTTTGAAG TAACAATTGA
AGACTGAAAT GAAAACGGTT GCATGAATTT CTTTAATGAT TTAAAAAGAC AAGCTATGTT ATTCATAGGT TGGTCATCGA
TTAACTCACG GTTGTGAAGT AATATAATTA AGTGAAATGG CGATTCAACG ATGTTTCTGA TATGAAGATG ATAAGTTCGT
CAGCATTAGT TCAGCAACAT CAATGAAGAA ATTGCCACGA CTATACTATT TCGTATAACT TATAGGCTTA TGTTGCTTAA
GTATGATATT GCGATGTTTT CTCCTGTTTT CTCTGGCCAC TCTCACTGAC AAGAGCTTAA AGATTATTGG ATCCTATTCA
GATACTTATT CTTGGATGAA GTTACGCTAT ATCTCTTGTT TATTCCTGTT GTAGGGGTAG ATCTGATTCA TGTACTGCTT
CTAGCTCCAA GGCGTGTCGG GAGAAGTTGC GAAGGGATAG ACTTAATGAC AAGTAACCTT TTGAATCCTT GCCATCTTCC
TGTTTGTAAC TGTTTTGAGG GCTTGTATTT AAAACGATTG ACATGCATAG GTTTGTTGAA TTGGGCTCCA TCTTGGAGCC
CGGAAGGCCT CCCAAAACAG ACAAGGCTGC CATTCTTATG GATGCTGTCC GAATGGTGAC CCAGCTCCGG GATGAAGCCC
AGAAGTTGAA AGAGTCAACT ACGAGTCTTC AAGAGAAGAT TAAAGAGTTA AAGGTGAGAC CTCAATTTAT ATTCAATACA
TTTCTTTTTA AGATTGGAGG ACTTGTTTGG GAGGTCCTTA TTCTAGGTCA TTTCATTTCG TTAAATTTTT TGCCATAACA
GTAGTACATT ACCCAGTGGG TAAGGCTATG TTGAATTTTG TAGCCGGACT CATCTAGCTA GTATAGGACT TTGTTGTTAT
AGTAGTAAGT AGTAGCCGTG ATGGAAAACA TGCAAACCAA ACCTTACAAG ACACTAACTG TTGAATTCCC ATTTACTATG
CAGGCTGAGA AGAATGAACT TCGTGATGAG AAACAGAGGC TCAAGGTGGA GAAAGAGAAG CTGGAGCTAC AAGTAAAATC
AATGAGTGCC CAACCTGCTT TCTTGCCACC CCCTCCCGCA ATTCCAGCCG CGTTTGCTCC ACAAGGTCAA GCCCCGGGCA
ACAAGTTGGT GCCTTTCATC AGTTATCCGG GTGTTGCCAT GTGGCAATTT ATGCCTCCTG CCGCAGTGGA TACATCACAA
GATCATGTAC TCCGTCCACC AGTTGCCTAA GTTGGCATTT GTACAATTAT TTGGGTTTCC ATTTTTTGCC CAAAAGTTGT
ATTCATTTTA CTATAGCTTA TAAGTATTCC ATGTAACTGG ATTCGGAGGT GACTTTGACT GTATTTGGCA TCTGATACTA
CTATGAAGTA ATCGCTGGTA TTTGCATGTA AATTTTAATA AGCTTCTCTG GCTGTCCTCG CCGGGTCTCT AATCTTTGTT
ACTGGTTTTG ATAAACCAAG GGCGGATCCA AAATGATAAT ATAACAATAA AAATAAAAGG TCGAACACAA CTTGTTTTCG
TACTC

>Vigan.07G113700.01
GTGGGAAGTG GTTGAAGGTA GGATTTTGAT GGTGTAATTG GTTCATTGAT GTGTCATTAT GGTCACATCA TGGGTCACTG
TAGAAGCATA GCCATAGATT CTCCTTTTCG CAGAAGGCTC TCTTTTTCTC TCTACCCTCC AACGTGCTCT CTTCAACACT
GCACAACACC CATTTCAATT CCTTCTCTCT TTCACCATAT CTCCTCAACC CACACTCTCC CTTACAATCA CTTCAAAGGA
ACAAGAAACA AATAAATACT CCAAATTCAC AATTCTCCGG GAAAATCCCT ACACGCCATG GTTTCCCCGG AAAACAGCAA
TTGGCTCTTC GACTACCCGT TGATCGACGA TGACATTACT GTCGGAGACG GCTCCTTCAC CGTCTCCGCT TCCGCCTTCT
CATGGCCCCC GCCTCCCTCC AATGTCAGTG TTGAAATTGA TGCTTCACTC GTTGATTCTG ATGGCCTCAA AGACCCTGCT
TTGAAGAAGA GGGGTAGATC TGATTCATGT ACTGCTTCTA GCTCCAAGGC GTGTCGGGAG AAGTTGCGAA GGGATAGACT
TAATGACAAG TTTGTTGAAT TGGGCTCCAT CTTGGAGCCC GGAAGGCCTC CCAAAACAGA CAAGGCTGCC ATTCTTATGG
ATGCTGTCCG AATGGTGACC CAGCTCCGGG ATGAAGCCCA GAAGTTGAAA GAGTCAACTA CGAGTCTTCA AGAGAAGATT
AAAGAGTTAA AGGCTGAGAA GAATGAACTT CGTGATGAGA AACAGAGGCT CAAGGTGGAG AAAGAGAAGC TGGAGCTACA
AGTAAAATCA ATGAGTGCCC AACCTGCTTT CTTGCCACCC CCTCCCGCAA TTCCAGCCGC GTTTGCTCCA CAAGGTCAAG
CCCCGGGCAA CAAGTTGGTG CCTTTCATCA GTTATCCGGG TGTTGCCATG TGGCAATTTA TGCCTCCTGC CGCAGTGGAT
ACATCACAAG ATCATGTACT CCGTCCACCA GTTGCCTAAG TTGGCATTTG TACAATTATT TGGGTTTCCA TTTTTTGCCC
AAAAGTTGTA TTCATTTTAC TATAGCTTAT AAGTATTCCA TGTAACTGGA TTCGGAGGTG ACTTTGACTG TATTTGGCAT
CTGATACTAC TATGAAGTAA TCGCTGGTAT TTGCATGTAA ATTTTAATAA GCTTCTCTGG CTGTCCTCGC CGGGTCTCTA
ATCTTTGTTA CTGGTTTTGA TAAACCAAGG GCGGATCCAA AATGATAATA TAACAATAAA AATAAAAGGT CGAACACAAC
TTGTTTTCGT ACTC

>Vigan.07G113700.01
ATGGTTTCCC CGGAAAACAG CAATTGGCTC TTCGACTACC CGTTGATCGA CGATGACATT ACTGTCGGAG ACGGCTCCTT
CACCGTCTCC GCTTCCGCCT TCTCATGGCC CCCGCCTCCC TCCAATGTCA GTGTTGAAAT TGATGCTTCA CTCGTTGATT
CTGATGGCCT CAAAGACCCT GCTTTGAAGA AGAGGGGTAG ATCTGATTCA TGTACTGCTT CTAGCTCCAA GGCGTGTCGG
GAGAAGTTGC GAAGGGATAG ACTTAATGAC AAGTTTGTTG AATTGGGCTC CATCTTGGAG CCCGGAAGGC CTCCCAAAAC
AGACAAGGCT GCCATTCTTA TGGATGCTGT CCGAATGGTG ACCCAGCTCC GGGATGAAGC CCAGAAGTTG AAAGAGTCAA
CTACGAGTCT TCAAGAGAAG ATTAAAGAGT TAAAGGCTGA GAAGAATGAA CTTCGTGATG AGAAACAGAG GCTCAAGGTG
GAGAAAGAGA AGCTGGAGCT ACAAGTAAAA TCAATGAGTG CCCAACCTGC TTTCTTGCCA CCCCCTCCCG CAATTCCAGC
CGCGTTTGCT CCACAAGGTC AAGCCCCGGG CAACAAGTTG GTGCCTTTCA TCAGTTATCC GGGTGTTGCC ATGTGGCAAT
TTATGCCTCC TGCCGCAGTG GATACATCAC AAGATCATGT ACTCCGTCCA CCAGTTGCCT AA

>Vigan.07G113700.01
MVSPENSNWL FDYPLIDDDI TVGDGSFTVS ASAFSWPPPP SNVSVEIDAS LVDSDGLKDP ALKKRGRSDS CTASSSKACR
EKLRRDRLND KFVELGSILE PGRPPKTDKA AILMDAVRMV TQLRDEAQKL KESTTSLQEK IKELKAEKNE LRDEKQRLKV
EKEKLELQVK SMSAQPAFLP PPPAIPAAFA PQGQAPGNKL VPFISYPGVA MWQFMPPAAV DTSQDHVLRP PVA*