GBrowse Details

Vigan.07G062100.01

Basic Information:
Name: Vigan.07G062100.01
Multiple alignment
Variant Information
Position: Chr07:4631018..4633863 (+ strand)
Length: 2846
Functional Information:
Description: Similar to Uncharacterized protein. [I1LTH4, Glycine max]
InterPro: Double-stranded RNA-binding domain (IPR014720)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.25,16.42,10.20,7.66,18.40,13.54,9.94,10.50
Automatic updates:
Name: NM_001358363 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max double-stranded RNA-binding protein 2-like (LOC100815739), mRNA.
PubMed ID: 29087011 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:4631018..4631430 (+ strand)
Length: 413
Type: five_prime_UTR
Position: Chr07:4631431..4631676 (+ strand)
Length: 246
Type: CDS
Position: Chr07:4632228..4632447 (+ strand)
Length: 220
Type: CDS
Position: Chr07:4632855..4633609 (+ strand)
Length: 755
Type: CDS
Position: Chr07:4633610..4633863 (+ strand)
Length: 254
Type: three_prime_UTR

>Vigan.07G062100.01 class=Sequence position=Chr07:4631018..4633863 (+ strand)
ATGCGAAGTA AATAAATAGT GGTCTCATAA AGCATGAAAA TATAGGAAAA GATCACATTC ACATCCATGC ACTGCACTGG
TGCACTGCAG CCGAACCTTT GAGTTGACTC ACAACAGCAA CGCAATAAAT AACCTCCCAA TATAATTATA ATAATATTAA
TTAATTATTA TTATTATTAT TATTATTATT ATTATTATCA TTCACAGAAA TTACCCTCCA CTCTCCCCTT CTGCACTTTC
CTCTCTTTTT CTCACTCCTC AACTTTCTCT CACTACACCG TCTCCTTTCT CCGTCGACAA ACCCTAAGCC CATTCATTTG
CCCTCGGACC AATTTCCCGG GCCGGTCAGA AATATTCGAC CCGATCCGCG CGTGGCTACC GTCTTCTCGG TGGTGCTGGT
GACGGTGGTG GAAATGTACA AAAACCAGCT TCAAGAGCTG GCCCAACGGA GCTGCTTCAA CCTGCCTTCA TACACGTGCA
TTCGGGAAGG TCCCGATCAC GCGCCCAGGT TCAAGGCCAC CGTCAACTTT AACGGCGAGA TCTTCGAGAG TCCTCACTAC
TGCTCCACTC TCCGTCAGGC AGAACACTCC GCCGCCGAAG TCGCTCTCAA TTCCCTGTCC CACCGTGGCC CTTCCCACTC
CCTCGCCGCC AAGATCCTCG TGAGTCTCAT TGCCGCTTCT AGGGTTTTTG CTTTCTCCCT TTCTCGCTCT GCTTAACCCC
CAAATATTTT GCGCACTCAA CACCAATAAC CCACGTTTTT TGCTAACCTG CGCCTTCTCA CCAACCTCCA CCCTTTTACT
CTTCGTTTAT ATTAAAACTC ATCGACCTCT TTTACAATTA TGCTAATGTT TCTTATTTAC TTGATTTTTT AAATTAATGC
ACAAATGTTG CTGGTAGGTG TAGAACGTTG ATCATACCAA TTAATCCATT TTTATTTATT TATTCATGCT TAAGTCTTTA
TTAGAAAACT TTATGAAAGA GAACATAACA TGAATCTGTT TCTAAAATTA GAAGTGAACT TTATGCTGCT CTGCTTTTAT
AGCTTGTAAA AAGTTCACCT GCTGTAAACT TGTAATTTTT TTTTTTTTGT AATTTTGTTG ATGTGGAGTA AACATGTGTA
ACCATTGAAC CTCATTGCAT GGTGTTTCTT TGTTGCATAT GTGGTCTTTT TTCTTTGTTC CACATGCTTA TTCTGTTCAA
TGTCTTTTAG GATGAGACTG GAGTGTACAA GAACCTTCTA CAGGAAATTG CGCAAAGGGT AGGAGCCCCA TTGCCTCACT
ACACAACGTA CAGGTCTGGC CTAGGACATT TACCTGTTTT TACCGGGATA GTAGAGCTTG CTGGAATCTC ATTTACTGGA
GAACCCGCAA AGAATAAGAA ACAAGCTGAG AAAAATGCAG CTATGGCAGC TTGGTCGGCT TTGAAACAAT GTAAGTTGTA
GGTGTCTTTG ATCTGGAAAA TTAGTTGTTT TCATGTAAAA TATACATACT TTATGTCAAT TTGTCCTCTG AACATAGCGT
GATATAAGTT GGAGATTAAA ATTGGATAGC GGAAATACCC AACCCAAGCC TGATTCCCTG TTTCTTCCGT TCTCATTACA
GATGGCAAAA GAATTTGGTT GGCAAATTTA TTTGTGATAA GAGAGAATAC TAAAAAGCCT TTTTATAGTA CATATCTATT
TTAGTTTAAA GATAATTTCT TTAGAAGACA TCGTGCCAGA TAGATTTACT CATGACTTTT TGGCAATAAA ACTACATTTT
TCATCTCCTG TGTATCTGAT GATTTATGAT TCGTTTGTGA ATGATTGAAT ACGAATGGGT AATAATTTTC TTACCAGTGG
CAAAAGAGAC TGCAAGCTCC TCTACAGAAC CAGAGAACAA TGATGAACTG GAACAGATCA CAATAGCGCG GGCTTTACTG
AATTACCGTT TGAAGGAGAA GATGACAATG TCTAATCCAA ACACTCTCAT TCCATTTCAT AAAAGGTTTC AGATTCAAAA
TCCCAGACCA ATCAATTCGC AACCACCGCC AGCCACTTCG TCAAAAATCC TTCCCCTAAT TTGCCAAAGG ACCGCACCTC
GAAGCAAGCC ATCAATGGCA ACAGCAAATG AAAGTTCTCG AAACAGGCAT CCACAGGCTG CAGTGACCGG TGACAATTCC
ACCCTACCAC CACAGTCTTG TGCTCTAGAA AGCCGAGGGA TCCGTCCCCT TAAGTTCCCT GCAGTAGGAG CAGCACCTTA
TGTTCCTATT CGACAAATGA GATCAACTTG CCAAGGGATT GCTCCTGCAG TGACTATACG GACTGTGGTA CCAGCATTTG
CTGCACCACC TTGTCCACCA CCTGCCTCAG TGCCACCCCA TCCTGTAATA CAGGCTTCTC CAATGCGAGT TGCTCCTGCA
GTCAATATTC GGCAGGCTGT TCCTGTATAT GCTGCTCCAC CTCCAAGAAG GAATGAACCT GCTCCCATCC AAAAGGATCT
ACCAACTGCC AGTGCCTCTT GCCAACAAGA TAAACAACCA ATTAAAATTC AAGAGACGGA CAAGGCTGAG AACATCGAGA
CTATGCATAT TTTGGAGCAG CTGAAAATTT GAAATTTATT GAAGTAGGTC TGATCCATGG GAACACTGTC ATGTTTTTGT
ACTTGATCCT ATAATGAGTG ATGTTAAATC ATCCGTTCTT TTTTCCTTCC TCACCCTCAC CCCATTTTGT CCTGTTAAAT
GTTCTTTTTT CCTTCCTCAC CCTCACCCCC ATTTTGTCCT GTTAAATGTG ACAGTTGCCG CAGGTTGATT AGTATCAGCA
GTTCAATTTC TGTGAAATTC AAGGGCAGTT TGGATTTAAA TTTTAC

>Vigan.07G062100.01
ATGCGAAGTA AATAAATAGT GGTCTCATAA AGCATGAAAA TATAGGAAAA GATCACATTC ACATCCATGC ACTGCACTGG
TGCACTGCAG CCGAACCTTT GAGTTGACTC ACAACAGCAA CGCAATAAAT AACCTCCCAA TATAATTATA ATAATATTAA
TTAATTATTA TTATTATTAT TATTATTATT ATTATTATCA TTCACAGAAA TTACCCTCCA CTCTCCCCTT CTGCACTTTC
CTCTCTTTTT CTCACTCCTC AACTTTCTCT CACTACACCG TCTCCTTTCT CCGTCGACAA ACCCTAAGCC CATTCATTTG
CCCTCGGACC AATTTCCCGG GCCGGTCAGA AATATTCGAC CCGATCCGCG CGTGGCTACC GTCTTCTCGG TGGTGCTGGT
GACGGTGGTG GAAATGTACA AAAACCAGCT TCAAGAGCTG GCCCAACGGA GCTGCTTCAA CCTGCCTTCA TACACGTGCA
TTCGGGAAGG TCCCGATCAC GCGCCCAGGT TCAAGGCCAC CGTCAACTTT AACGGCGAGA TCTTCGAGAG TCCTCACTAC
TGCTCCACTC TCCGTCAGGC AGAACACTCC GCCGCCGAAG TCGCTCTCAA TTCCCTGTCC CACCGTGGCC CTTCCCACTC
CCTCGCCGCC AAGATCCTCG ATGAGACTGG AGTGTACAAG AACCTTCTAC AGGAAATTGC GCAAAGGGTA GGAGCCCCAT
TGCCTCACTA CACAACGTAC AGGTCTGGCC TAGGACATTT ACCTGTTTTT ACCGGGATAG TAGAGCTTGC TGGAATCTCA
TTTACTGGAG AACCCGCAAA GAATAAGAAA CAAGCTGAGA AAAATGCAGC TATGGCAGCT TGGTCGGCTT TGAAACAATT
GGCAAAAGAG ACTGCAAGCT CCTCTACAGA ACCAGAGAAC AATGATGAAC TGGAACAGAT CACAATAGCG CGGGCTTTAC
TGAATTACCG TTTGAAGGAG AAGATGACAA TGTCTAATCC AAACACTCTC ATTCCATTTC ATAAAAGGTT TCAGATTCAA
AATCCCAGAC CAATCAATTC GCAACCACCG CCAGCCACTT CGTCAAAAAT CCTTCCCCTA ATTTGCCAAA GGACCGCACC
TCGAAGCAAG CCATCAATGG CAACAGCAAA TGAAAGTTCT CGAAACAGGC ATCCACAGGC TGCAGTGACC GGTGACAATT
CCACCCTACC ACCACAGTCT TGTGCTCTAG AAAGCCGAGG GATCCGTCCC CTTAAGTTCC CTGCAGTAGG AGCAGCACCT
TATGTTCCTA TTCGACAAAT GAGATCAACT TGCCAAGGGA TTGCTCCTGC AGTGACTATA CGGACTGTGG TACCAGCATT
TGCTGCACCA CCTTGTCCAC CACCTGCCTC AGTGCCACCC CATCCTGTAA TACAGGCTTC TCCAATGCGA GTTGCTCCTG
CAGTCAATAT TCGGCAGGCT GTTCCTGTAT ATGCTGCTCC ACCTCCAAGA AGGAATGAAC CTGCTCCCAT CCAAAAGGAT
CTACCAACTG CCAGTGCCTC TTGCCAACAA GATAAACAAC CAATTAAAAT TCAAGAGACG GACAAGGCTG AGAACATCGA
GACTATGCAT ATTTTGGAGC AGCTGAAAAT TTGAAATTTA TTGAAGTAGG TCTGATCCAT GGGAACACTG TCATGTTTTT
GTACTTGATC CTATAATGAG TGATGTTAAA TCATCCGTTC TTTTTTCCTT CCTCACCCTC ACCCCATTTT GTCCTGTTAA
ATGTTCTTTT TTCCTTCCTC ACCCTCACCC CCATTTTGTC CTGTTAAATG TGACAGTTGC CGCAGGTTGA TTAGTATCAG
CAGTTCAATT TCTGTGAAAT TCAAGGGCAG TTTGGATTTA AATTTTAC

>Vigan.07G062100.01
ATGTACAAAA ACCAGCTTCA AGAGCTGGCC CAACGGAGCT GCTTCAACCT GCCTTCATAC ACGTGCATTC GGGAAGGTCC
CGATCACGCG CCCAGGTTCA AGGCCACCGT CAACTTTAAC GGCGAGATCT TCGAGAGTCC TCACTACTGC TCCACTCTCC
GTCAGGCAGA ACACTCCGCC GCCGAAGTCG CTCTCAATTC CCTGTCCCAC CGTGGCCCTT CCCACTCCCT CGCCGCCAAG
ATCCTCGATG AGACTGGAGT GTACAAGAAC CTTCTACAGG AAATTGCGCA AAGGGTAGGA GCCCCATTGC CTCACTACAC
AACGTACAGG TCTGGCCTAG GACATTTACC TGTTTTTACC GGGATAGTAG AGCTTGCTGG AATCTCATTT ACTGGAGAAC
CCGCAAAGAA TAAGAAACAA GCTGAGAAAA ATGCAGCTAT GGCAGCTTGG TCGGCTTTGA AACAATTGGC AAAAGAGACT
GCAAGCTCCT CTACAGAACC AGAGAACAAT GATGAACTGG AACAGATCAC AATAGCGCGG GCTTTACTGA ATTACCGTTT
GAAGGAGAAG ATGACAATGT CTAATCCAAA CACTCTCATT CCATTTCATA AAAGGTTTCA GATTCAAAAT CCCAGACCAA
TCAATTCGCA ACCACCGCCA GCCACTTCGT CAAAAATCCT TCCCCTAATT TGCCAAAGGA CCGCACCTCG AAGCAAGCCA
TCAATGGCAA CAGCAAATGA AAGTTCTCGA AACAGGCATC CACAGGCTGC AGTGACCGGT GACAATTCCA CCCTACCACC
ACAGTCTTGT GCTCTAGAAA GCCGAGGGAT CCGTCCCCTT AAGTTCCCTG CAGTAGGAGC AGCACCTTAT GTTCCTATTC
GACAAATGAG ATCAACTTGC CAAGGGATTG CTCCTGCAGT GACTATACGG ACTGTGGTAC CAGCATTTGC TGCACCACCT
TGTCCACCAC CTGCCTCAGT GCCACCCCAT CCTGTAATAC AGGCTTCTCC AATGCGAGTT GCTCCTGCAG TCAATATTCG
GCAGGCTGTT CCTGTATATG CTGCTCCACC TCCAAGAAGG AATGAACCTG CTCCCATCCA AAAGGATCTA CCAACTGCCA
GTGCCTCTTG CCAACAAGAT AAACAACCAA TTAAAATTCA AGAGACGGAC AAGGCTGAGA ACATCGAGAC TATGCATATT
TTGGAGCAGC TGAAAATTTG A

>Vigan.07G062100.01
MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPHYC STLRQAEHSA AEVALNSLSH RGPSHSLAAK
ILDETGVYKN LLQEIAQRVG APLPHYTTYR SGLGHLPVFT GIVELAGISF TGEPAKNKKQ AEKNAAMAAW SALKQLAKET
ASSSTEPENN DELEQITIAR ALLNYRLKEK MTMSNPNTLI PFHKRFQIQN PRPINSQPPP ATSSKILPLI CQRTAPRSKP
SMATANESSR NRHPQAAVTG DNSTLPPQSC ALESRGIRPL KFPAVGAAPY VPIRQMRSTC QGIAPAVTIR TVVPAFAAPP
CPPPASVPPH PVIQASPMRV APAVNIRQAV PVYAAPPPRR NEPAPIQKDL PTASASCQQD KQPIKIQETD KAENIETMHI
LEQLKI*