GBrowse Details

Vigan.06G221200.01

Basic Information:
Name: Vigan.06G221200.01
Multiple alignment
Variant Information
Position: Chr06:35272358..35275970 (- strand)
Length: 3613
Functional Information:
Description: Similar to ras-related protein Rab7 isoformX1. [XP_003537879.1, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:331.19,119.59,84.36,98.69,124.89,88.18,82.72,85.56
Arabidopsis thaliana homolog: AT3G18820.1
Automatic updates:
Name: NM_001251489 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305642 (LOC100305642), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:35272358..35272832 (- strand)
Length: 475
Type: three_prime_UTR
Position: Chr06:35272833..35272899 (- strand)
Length: 67
Type: CDS
Position: Chr06:35273469..35273614 (- strand)
Length: 146
Type: CDS
Position: Chr06:35273754..35273834 (- strand)
Length: 81
Type: CDS
Position: Chr06:35273939..35274085 (- strand)
Length: 147
Type: CDS
Position: Chr06:35275136..35275235 (- strand)
Length: 100
Type: CDS
Position: Chr06:35275364..35275390 (- strand)
Length: 27
Type: CDS
Position: Chr06:35275713..35275765 (- strand)
Length: 53
Type: CDS
Position: Chr06:35275766..35275970 (- strand)
Length: 205
Type: five_prime_UTR

>Vigan.06G221200.01 class=Sequence position=Chr06:35272358..35275970 (- strand)
GCTGTCAGCG AGGGAATATT CGCGAAGAGA GAGAAGAAGG CGTTTGCAAT ATTGAGTAGA GAGAGACGAT AGAGAAGTTG
AGTTTGGAGG TGCAGGAGAG ACAGAGAGAG AGAGAGATCG TAGCGCATCG CAACGACTCA GTCAAACACT CTGTAACACT
TTATTTCAAT TCTTACTTTC TCCGATCGCA TCGCTCGCCA CCGCCATGCC TTCCCGAAGA AGAACTCTCC TGAAGGTCAT
CATTCTCGGT GACAGTGGGT TCGTCTCTTC ATCTTTTCCA TTTCTAGGGT TTCTTTTACA CAGATCTCTT CATTTTTCGC
GCTATTCAAC CTCTTTCTTC AATCTCCCTT CGATAATTTC GTTACGTTAA TTCGTTTTAC TTCCGATTGG TTTATATTGT
GGAATTTTTC ATGTTTATGT TTGGATCACA ATAACCGTTG CTTCCGTTAC TTAAATCTCT TTCGCATTTG CAATTGCGCT
TATTCGATTT GTTAGTTACA GAGTTTTACC ATTCCTACCG GTTATTAGTT CTTTATTTCT TTTGAAATCA TTGTATGATG
CTTCTGTTGA TGTTTCGCAG GGTGGGGAAG ACGTCTTTGA TGAACCAGTA TCCTTCGTTT CTGTCTAGAT ACTCCTTGTT
TATGTTTATT ATTGTTTTAA TCTTCGATGC TATTTGTTTT CTAGTGCTCA GTTCAGTATG GAAACTATGT ATTTCCCCTA
ACCTATGTAA TTTAGATATG TGAATAAGAA GTTTAGTAAT CAGTACAAGG CAACCATTGG AGCGGATTTT TTGACAAAAG
AAGTGCAATT CGAAGATAGG CTTTTCACCT TACAGGTTTG TCGATAGTGC TTAGCTTGTT TTTGCTATGC GTGGAAGTGA
ATGCATGCTT GGGCCTTAAG TTTGGGTGAG TGGTGGGTTT TGGGGATGCT AGGAAGGGGG GTAGAAGATA CTGATTATGT
TGGAGTCTCG CCTTCCTGAT GTTATTGCCT AGATTTCCCT ATCTTATTAT GTGTCATGTT ATGTACTGAT TTGGCGGAAT
AATTCGTTGA TTGTAACCTC CTTAATAATG GTTTTCATGT ATTGATCTTG CAAGCTATAA AGCCTGTGGA ACAAATTGTC
TAATTGCCGA GGCATCGTAT ATACTTTCAC ATCGTACTTA GTCTAAGCTT TCTAGATTAT TGGATTAAGT TTCTCTGGTT
ATTACTCCTA ATAATGTTAG AATGTTCAAG TGTGTACGAA ATTCCACTTT CAATGTAACG CCAATCCAAC GCTCGCATTA
CTTTTACTTT GTGCATCAGA ACGTGTAAAC CTCCATTTAA CGCTAATCAG TAGGTTTCAG ATACACTCTA GTTATTTTGA
AATATTTATA TACTCTTGTA CATGGGATGT AGGTTGTGCA GGGTACCAAT TTCTTGAATT TCTGAGAAAC TAATCATCCC
ATTATTTTTC ATGTCATTGT AGTATGTCTT GTACATGTGA CAGTTGTGAC CTTAACGTGG ACTTCATAGT ATTGTATACA
ATAAAATGGT TTTTATTAAT ATGATTGAGC ATCTTTGGGA TGTTGTATGG ATTGAATCTG ATGGGATAGA TAACTAAACT
ATTTTAAAGA TTACTAGATT ACTAATGATG AAAGGATAAT TGTTTTGTTG CTTTCTTAAG AGCCTTTATG GAGGATTTCC
AGTTAAAGAT TGTGATTTGT GAGTGACCAG TGTAGTTGTA CTACAGTCAC ACGCATGCAG TGTCGGAGAT GCCTATGTAA
CTTTGTTCCT AGTTGATATT ATTTTGGGGA TTTATTCTAT TTCTCACATT CTATTTCTGT ATTTTTAAAC AAGTTATGAC
GGTCAAAATT TTATTATTGT TAATTGTTTG TTCTTAACTT TACAGATTTG GGATACAGCT GGCCAAGAAA GATTCCAAAG
CCTTGGAGTT GCTTTCTATC GAGGTGCTGA TTGTTGTGTT CTTGTATATG ATGTTAATTC AATGAAATCA TTTGACAACC
TTAACAACTG GAGGGAGGAA TTTCTGATTC AAGTATGCTT ATATTCCTTC AAATGTGTAA ATCTTGTTTT TATCTATTAT
GGCAAGCACT ATTTTACAGA ATTTGCAACT TCTAATATTT GTGATCACTT TGTCAGGCAA GTCCTTCCGA TCCCGAGAAT
TTTCCTTTTG TTGTCATAGG AAACAAAATA GATATTGATG GTGGGAACAG CAGAGTGGTA TTTCCCCCCT TAAGTTTGCT
GTCTTCAATT TTACTTTCTA TTTTTAAAAA GATATCCCGC ATCAGACCCT CCTAGACTCG TAAAACACCA AATGCATAAT
GCTAAAGATA TGAACTCGAC AAGTTCCTAT GTGCAGGTGT CAGAAAAGAA GGCTCGGGCT TGGTGTGCAT CAAAAGGAAA
TATTCCATAT TTTGAGACAT CTGCCAAAGA AGGCATTAAT GTTGAAGAAG CATTCCAATG CATAGCAAAG AATGCCCTGA
AAAGTGGAGA AGAAGAAGAA TTGTAAGTTC CTATATCTGA GCATCTCTTC TTTCGTATTT GTCAACTGAC CAACTGAACT
TATCACCAGA GTCACATTAA ACCAGATGTC TTAGTTTATG AAGTTGTATT CATTGTTTGA GGAGCACAGT TTGGTCCCAT
CAGTGTCTTA ATTTACGATG TCCATATATT CAAATTGGAA GATCTATCTG TGGTTAATGT TTCCTTATTG ATATTTGAGA
CAAACCATTT TTTATACTGT ACCCAAAAAA TAATTGGTCA TTGGCATACA TTATTAATTT TAAGCTTGTT GTTTGTAAAG
TGCATGTTTC TGTTTTTAAT TTGTTGGTAA AATGGATTTT TTGTGTAATA TTGAAAGATC GTTGCTTACC ATAATCACGA
CTGCTTCGGG ATTTAGTTTT GGAGATGCTA GTTTGTTTAA TATGATTAAG TCCTGCAATT GGTTTTTGTT GTGTATTTTG
TTTGCAGTAT TTCTATTTCT TGGTTATGGT TCTTATTATT TGAAACTTGA TTTATTCATT CATGTGTTAT TAATATTACA
TTTTGGGTTT TGCTGTCCGT GCTTATTGAA GATACCTGCC AGACACAATT GATGTTGGAA ACAGCAGTCA GCCACGGGCA
ACAGGGTGCG AGTGCTGAAT ATATAGGTTT TCTTTTCAAA ACAAATAAAG TACATTACTT CAAAATGATT TCACTGTGTT
TAGTCATTGC TGTCTATGAA GAGGCGTCAT TGTACATTAG TGTTTGCTCA AGAAACAAAT TTATCCAATG CTATATTTGG
TACTTGTTTG GTATGTTATA TAATTGATCA TATTAGTTCT ACATGTATGC TATTCCGATA TTGTAAAAGA AAACTGCTTA
AGATCTTTTT GAAGTTATGT ATTGCATTCC TCATTGTTCG TACTCAACAT AGGCAGTATT TTGTACGACT GTTTTCGTTA
TTCCACAAAT TTGTGAACAA TGATTGATTG TCGTGGTCAT GATTCGAGCT TTTGTTGATG GACCAACCTC ACAACGCAGT
GGTTTGCTGG GATTCAGATG TTGCTGGGTA AATCTCTCGA GGTATTGAAA CCTTAAGATA TGGTGATTTC CTAAACAGGA
AATGGAAGCT ACA

>Vigan.06G221200.01
GCTGTCAGCG AGGGAATATT CGCGAAGAGA GAGAAGAAGG CGTTTGCAAT ATTGAGTAGA GAGAGACGAT AGAGAAGTTG
AGTTTGGAGG TGCAGGAGAG ACAGAGAGAG AGAGAGATCG TAGCGCATCG CAACGACTCA GTCAAACACT CTGTAACACT
TTATTTCAAT TCTTACTTTC TCCGATCGCA TCGCTCGCCA CCGCCATGCC TTCCCGAAGA AGAACTCTCC TGAAGGTCAT
CATTCTCGGT GACAGTGGGG TGGGGAAGAC GTCTTTGATG AACCAATATG TGAATAAGAA GTTTAGTAAT CAGTACAAGG
CAACCATTGG AGCGGATTTT TTGACAAAAG AAGTGCAATT CGAAGATAGG CTTTTCACCT TACAGATTTG GGATACAGCT
GGCCAAGAAA GATTCCAAAG CCTTGGAGTT GCTTTCTATC GAGGTGCTGA TTGTTGTGTT CTTGTATATG ATGTTAATTC
AATGAAATCA TTTGACAACC TTAACAACTG GAGGGAGGAA TTTCTGATTC AAGCAAGTCC TTCCGATCCC GAGAATTTTC
CTTTTGTTGT CATAGGAAAC AAAATAGATA TTGATGGTGG GAACAGCAGA GTGGTGTCAG AAAAGAAGGC TCGGGCTTGG
TGTGCATCAA AAGGAAATAT TCCATATTTT GAGACATCTG CCAAAGAAGG CATTAATGTT GAAGAAGCAT TCCAATGCAT
AGCAAAGAAT GCCCTGAAAA GTGGAGAAGA AGAAGAATTA TACCTGCCAG ACACAATTGA TGTTGGAAAC AGCAGTCAGC
CACGGGCAAC AGGGTGCGAG TGCTGAATAT ATAGGTTTTC TTTTCAAAAC AAATAAAGTA CATTACTTCA AAATGATTTC
ACTGTGTTTA GTCATTGCTG TCTATGAAGA GGCGTCATTG TACATTAGTG TTTGCTCAAG AAACAAATTT ATCCAATGCT
ATATTTGGTA CTTGTTTGGT ATGTTATATA ATTGATCATA TTAGTTCTAC ATGTATGCTA TTCCGATATT GTAAAAGAAA
ACTGCTTAAG ATCTTTTTGA AGTTATGTAT TGCATTCCTC ATTGTTCGTA CTCAACATAG GCAGTATTTT GTACGACTGT
TTTCGTTATT CCACAAATTT GTGAACAATG ATTGATTGTC GTGGTCATGA TTCGAGCTTT TGTTGATGGA CCAACCTCAC
AACGCAGTGG TTTGCTGGGA TTCAGATGTT GCTGGGTAAA TCTCTCGAGG TATTGAAACC TTAAGATATG GTGATTTCCT
AAACAGGAAA TGGAAGCTAC A

>Vigan.06G221200.01
ATGCCTTCCC GAAGAAGAAC TCTCCTGAAG GTCATCATTC TCGGTGACAG TGGGGTGGGG AAGACGTCTT TGATGAACCA
ATATGTGAAT AAGAAGTTTA GTAATCAGTA CAAGGCAACC ATTGGAGCGG ATTTTTTGAC AAAAGAAGTG CAATTCGAAG
ATAGGCTTTT CACCTTACAG ATTTGGGATA CAGCTGGCCA AGAAAGATTC CAAAGCCTTG GAGTTGCTTT CTATCGAGGT
GCTGATTGTT GTGTTCTTGT ATATGATGTT AATTCAATGA AATCATTTGA CAACCTTAAC AACTGGAGGG AGGAATTTCT
GATTCAAGCA AGTCCTTCCG ATCCCGAGAA TTTTCCTTTT GTTGTCATAG GAAACAAAAT AGATATTGAT GGTGGGAACA
GCAGAGTGGT GTCAGAAAAG AAGGCTCGGG CTTGGTGTGC ATCAAAAGGA AATATTCCAT ATTTTGAGAC ATCTGCCAAA
GAAGGCATTA ATGTTGAAGA AGCATTCCAA TGCATAGCAA AGAATGCCCT GAAAAGTGGA GAAGAAGAAG AATTATACCT
GCCAGACACA ATTGATGTTG GAAACAGCAG TCAGCCACGG GCAACAGGGT GCGAGTGCTG A

>Vigan.06G221200.01
MPSRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG
ADCCVLVYDV NSMKSFDNLN NWREEFLIQA SPSDPENFPF VVIGNKIDID GGNSRVVSEK KARAWCASKG NIPYFETSAK
EGINVEEAFQ CIAKNALKSG EEEELYLPDT IDVGNSSQPR ATGCEC*