GBrowse Details

Vigan.06G192300.01

Basic Information:
Name: Vigan.06G192300.01
Multiple alignment
Variant Information
Position: Chr06:32867798..32871653 (- strand)
Length: 3856
Functional Information:
Description: Similar to Uncharacterized protein. [I1LR16, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
InterPro: AP2/ERF domain (IPR001471)
DNA-binding domain (IPR016177)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:37.76,73.82,3.92,18.15,11.47,3.71,17.94,28.27
Arabidopsis thaliana homolog: AT2G28550.3
Automatic updates:
Name: KT031086 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:32867798..32867845 (- strand)
Length: 48
Type: three_prime_UTR
Position: Chr06:32867846..32868118 (- strand)
Length: 273
Type: CDS
Position: Chr06:32868687..32868800 (- strand)
Length: 114
Type: CDS
Position: Chr06:32869186..32869310 (- strand)
Length: 125
Type: CDS
Position: Chr06:32869418..32869521 (- strand)
Length: 104
Type: CDS
Position: Chr06:32869635..32869679 (- strand)
Length: 45
Type: CDS
Position: Chr06:32869913..32870058 (- strand)
Length: 146
Type: CDS
Position: Chr06:32870143..32870230 (- strand)
Length: 88
Type: CDS
Position: Chr06:32870354..32870384 (- strand)
Length: 31
Type: CDS
Position: Chr06:32870467..32870492 (- strand)
Length: 26
Type: CDS
Position: Chr06:32870673..32871169 (- strand)
Length: 497
Type: CDS
Position: Chr06:32871170..32871653 (- strand)
Length: 484
Type: five_prime_UTR

>Vigan.06G192300.01 class=Sequence position=Chr06:32867798..32871653 (- strand)
AAGAAAGTGT TTCTTCGCAC TTCTCTCTCT TCCATGGAAT CCAATAGTCG GCGACGCTTT CACTTTCTCC GGCGACAATG
AACTCATCGC CGGCGAAGTG GGTTCGCGTT GCTCTCTTCT CACTCGTTCC TTCAGTTCCT TCCTCTCACT CCTCCTTTTC
CGGTCGTCGG AAAATTTATC CGCCGTCCTC ACAAAGATTG AACGAATCGG AAAACTAGAA GCGATTCCGT TTTCTTCTTG
ACTTTTCTTT TTACCTCTCT CTCTCATTCT CGATCGCTAG CTCGCTTACA TTCTGTTGTT TTCGATCGGA TCCATTTCTT
TGCCGGAAAC ACCATCGCCG GCGATATGGA AACGTAGTTC AATAAGCCTC TGCTGACGTT AGAAAACCTT AGGAATTATA
AAAGAGAAAA GCGAAATTTA ATAGTTAGTT TGGTTGTTTA GTTAGTTAAC GTTTGGAACG GTGTAACTAA ATATAAACGC
GACGATGTTA GATCTTAATC TCAATGCTGA GTGGACCGAT TCGGCTCGTG ACGGCGACTC GCCGGTTCCG TTAGAGGAGT
TTCCTGAAGG TTCGCGGAAC CAAATGGCGG AATCAGGGAC TTCGAATTCC TCTGTGGTGA ATGCGGACGG GTCCAGTAAC
GGCTGCTGCG ACGAGGACTC GTGCTCCACG CGCGCTGATG ACGTGTACAC CTTCAATTTC GATATCCTTA AAGTGGAAGG
CGCGAGCGAC GTCGTAACGA AGGAGTTGTT TCCGGTGAGT GGAGGAGTGG CAACGTCGTC GTTTTCGGCG AGAAAAAGTT
TCGTGGATCT CGCGTTCGAT CGTGAGGGAG GAAACAGTGA CATAAAGATG CTTCAGCCGC AGCCTCAGAC TCAGACTCAG
CAACCGGCGA AGAAGAGTAG GAGAGGACCA AGGTCTCGAA GCTCACAGTA CAGAGGGGTT ACCTTTTATA GAAGAACGGG
AAGATGGGAA TCGCATATCT GGTTAGTGAA TTTTTGTAGT GATATGAATT TAGCTCGCTT CGGTTTCGTT TTAGTTGCGT
CTTCTTCCCT TTTGACGGGG AAGGGAATAT AAGTTTGTGT GAAGTTTGGT TTTGGTGATT CATGGTTGAA TTGCATCTGA
CCTTATGTTC TTTGGTCTAT TTTTGTAATT ATTTGGTGTA GGGATTGCGG GAAACAAGTC TATTTGGGTA TGGATTTTGA
ATTTATGAAT TTCGGTGTTT AGGGTACATT TTAAGCATTA TTTGACGGAA TTGGTATTTG AACTTGTAGG AGGATTTGAC
ACGGCTCATG CTGCTGCTAG GTAGAGATTT GTGCTTATTT TGGTTCTCTT TCTCATAAAT TTGGTTTCAA GAAACGGTCC
ACTGTTTTTT TATTTATGAG GATTTTCCTG TGCTCGTCAA CTGACTTGGG GTTTTCAATT TAGAGCCTAT GATCGAGCTG
CTATTAAGTT CAGGGGAGTT GATGCTGACA TCAATTTCAA TCTGAGTGAT TATGAGGATG ATCTTAGACA GGTTAGAAAA
CTCAGAAGAC TTGATGAACA TGAAACTAGA TGGTGCTCAT GATTGATTTT TAACCATTTT CTTAATTACG GACAGTTGAA
GAATTTGTCC AAGGAGGAAT TCGTACATAT ACTGCGCCGC CAAAGTACTG GTTTCTCAAG AGGAAGTTCT AAATACCGAG
GAGTTACTCT CCACAAGTGT GGCCGGTGGG AAGCTCGAAT GGGACAATTC CTTGGCAAAA AGTGAGGACC TACTTTTATA
TATTAACTTA AGTAGTGATG TACTGTGACT ATTCTAGATG TTTGAATTCG AGTGCCTATT TGTCGGCAAA ATGAGTTGGT
TTCGGCTTAG GTCTTAATGC ATCTTTAAGC ATTTTTCCAT GTTTGGAGAA ACATGTCTAA GATGTAAGAT GCATGTTTTC
AACGAAACGA TTGGAAGGTA TTTTAGTTAT AGAGATTGCA ATGCTTTCAT GCAGGTATAT ATATCTTGGA TTATTCGACA
GCGAAGTAGA AGCTGCAAGG TCCTAATGTT ACATGAATTA CTTTCTTCCT GTACTGAATT TATTACACTG AATTATCGAA
ACTGATTTGG TTCAATCCAA CACGTATCTC CCTTTTTATT TTCTTAAAGT AGGGCTTATG ACAAGGCAGC TATCAAATGC
AACGGAAGGG AAGCAGTGAC CAACTTTGAG CCAAGTACAT ACGAAGGAGA GATGAAATCT GCAGCCACTA ATGAAGGTAA
CACTGTTATG GCAAATATGT TCTATTTTTT TAAATTCCCA ATTGAATTTC TTAATCAAGA AATGTTCCTT TTCTGAAATG
CGGTTATAAT TTTGTTAACA CAGTTAACAA TCATAATCTT GATCTCAATT TGGGCATAGC AACCCCAGGA ACTGGGTCCA
AAGAAAATTG GCAGCGACTT CAGTTCCCCT CTGTCCATTA CAACACGCAT GGTGGAATAA GTTCAATGGT ATAATTGAAC
TTACGTATTT ATTTATTTTA GGTTTGTTCT AAATTATTTG GAGTGAAGGT GAATAACCTT GTTGTTCTCA AGTTCGGGCT
AGCTTCAATA CCTGTTCAGT TGAATTTATG GCATTTGAAT CAACATATGT GGGAAAAGAG TAAAAGAAAC GAACCTATTT
TGATAAAAAC TCGGCATATC ATGAGACCCA TTGACAATAT GTTTGTCTCG ATAAAGACCG TTTCTAGCCT TTATAGGTTC
ACATGTAGCT AATTACATCC TGTTTTCCTT TGAATTCATT CATCTTCGTA GAACTGTAGG TCTTTGGTAT TTTTAATTAA
CTCTAGACTT GCAATTTAGT GATCATAATT GGCATGGTCC CCTTTATTTG CAGATGGAAA CAAATGTTGA TTCAGGAGTT
GGTAATCCAT CTTTGAAAAG ACTGGTTGTG AATGAAGACT GTCCTTCTGT ATGGAATGGA ATGTGTCCTA GTTTCTTTCC
CAATGAGGTA ATCCGCATAG TGTTCATTTC TTGTTTCTTT ATTAGGTACA TCATTTAAAA CATTTACAAT TGTTTTCTTC
CTAGGACCTC CATTTTCATT AGAATACTGA AGAATGCTTC ACTTTTAAAT ATGTAATTCA TGGCAAAAAT TGGTTGTTTA
TGATCAGGAT TTACTGATTA ATATATACAA CCTTTTGGTG TATTTTTTGT TATTGGAGCG GTATTCTGTT TATATATATG
TGTGTGTTCC ATGTTTACTT ATTCTGTTAA CAAAAATGAA TTGGTCCAAA ACATGTCTCA AAAGCATTAC TTGGAACATT
CAACCTTTGA CACAGTTTTA TTTTCTTTTT TCGTTTCGGT AATGCATGGT TAATGTATTC ATAAAGTAAG ATTACAATGG
AGGATGGCTT GAGTTTGAAA ACATAGATCA TCACAACATG GTGTGATTTT CGCAGGATGT TCTGTTAGGT TCATTTTATT
CTCGTACATT GAACTTGGAG AGTCAACAAT TATAATTGTG GCATGCAGTT TTGTATGTGA CTATTTAAGA CTGTAAAAGA
TTGTTAATAA TTTAGCAGGA AAAAACAGAG AGAATGAACA CGGAGCATTC GAAAGGACTG CCCAATTGGG CGTGGCAAAC
GCATGCCCAG GTCAATGCTA CCCCAGTACC AACGTTCTCT GCTGCAGCAG CATCATCAGG ATTCTCAATT TCAGCTACCT
TTCCTCCCAC TGCCACCTTT CCAACAAGAT CTACGAACTC CAATCCCCAG AGTCTCTGTT TTACTTCATC CAGCATGCAT
TCGTCTGAAT ATTATTACCA GGTTAAGCCC CGGCAGGCAC CACTGTAGCC GATCTTGTAC TACTCGTTAA AGGCAAACCA
CAAAAAGTTT TTGCGC

>Vigan.06G192300.01
AAGAAAGTGT TTCTTCGCAC TTCTCTCTCT TCCATGGAAT CCAATAGTCG GCGACGCTTT CACTTTCTCC GGCGACAATG
AACTCATCGC CGGCGAAGTG GGTTCGCGTT GCTCTCTTCT CACTCGTTCC TTCAGTTCCT TCCTCTCACT CCTCCTTTTC
CGGTCGTCGG AAAATTTATC CGCCGTCCTC ACAAAGATTG AACGAATCGG AAAACTAGAA GCGATTCCGT TTTCTTCTTG
ACTTTTCTTT TTACCTCTCT CTCTCATTCT CGATCGCTAG CTCGCTTACA TTCTGTTGTT TTCGATCGGA TCCATTTCTT
TGCCGGAAAC ACCATCGCCG GCGATATGGA AACGTAGTTC AATAAGCCTC TGCTGACGTT AGAAAACCTT AGGAATTATA
AAAGAGAAAA GCGAAATTTA ATAGTTAGTT TGGTTGTTTA GTTAGTTAAC GTTTGGAACG GTGTAACTAA ATATAAACGC
GACGATGTTA GATCTTAATC TCAATGCTGA GTGGACCGAT TCGGCTCGTG ACGGCGACTC GCCGGTTCCG TTAGAGGAGT
TTCCTGAAGG TTCGCGGAAC CAAATGGCGG AATCAGGGAC TTCGAATTCC TCTGTGGTGA ATGCGGACGG GTCCAGTAAC
GGCTGCTGCG ACGAGGACTC GTGCTCCACG CGCGCTGATG ACGTGTACAC CTTCAATTTC GATATCCTTA AAGTGGAAGG
CGCGAGCGAC GTCGTAACGA AGGAGTTGTT TCCGGTGAGT GGAGGAGTGG CAACGTCGTC GTTTTCGGCG AGAAAAAGTT
TCGTGGATCT CGCGTTCGAT CGTGAGGGAG GAAACAGTGA CATAAAGATG CTTCAGCCGC AGCCTCAGAC TCAGACTCAG
CAACCGGCGA AGAAGAGTAG GAGAGGACCA AGGTCTCGAA GCTCACAGTA CAGAGGGGTT ACCTTTTATA GAAGAACGGG
AAGATGGGAA TCGCATATCT GGGATTGCGG GAAACAAGTC TATTTGGGAG GATTTGACAC GGCTCATGCT GCTGCTAGAG
CCTATGATCG AGCTGCTATT AAGTTCAGGG GAGTTGATGC TGACATCAAT TTCAATCTGA GTGATTATGA GGATGATCTT
AGACAGTTGA AGAATTTGTC CAAGGAGGAA TTCGTACATA TACTGCGCCG CCAAAGTACT GGTTTCTCAA GAGGAAGTTC
TAAATACCGA GGAGTTACTC TCCACAAGTG TGGCCGGTGG GAAGCTCGAA TGGGACAATT CCTTGGCAAA AAGTATATAT
ATCTTGGATT ATTCGACAGC GAAGTAGAAG CTGCAAGGGC TTATGACAAG GCAGCTATCA AATGCAACGG AAGGGAAGCA
GTGACCAACT TTGAGCCAAG TACATACGAA GGAGAGATGA AATCTGCAGC CACTAATGAA GTTAACAATC ATAATCTTGA
TCTCAATTTG GGCATAGCAA CCCCAGGAAC TGGGTCCAAA GAAAATTGGC AGCGACTTCA GTTCCCCTCT GTCCATTACA
ACACGCATGG TGGAATAAGT TCAATGATGG AAACAAATGT TGATTCAGGA GTTGGTAATC CATCTTTGAA AAGACTGGTT
GTGAATGAAG ACTGTCCTTC TGTATGGAAT GGAATGTGTC CTAGTTTCTT TCCCAATGAG CAGGAAAAAA CAGAGAGAAT
GAACACGGAG CATTCGAAAG GACTGCCCAA TTGGGCGTGG CAAACGCATG CCCAGGTCAA TGCTACCCCA GTACCAACGT
TCTCTGCTGC AGCAGCATCA TCAGGATTCT CAATTTCAGC TACCTTTCCT CCCACTGCCA CCTTTCCAAC AAGATCTACG
AACTCCAATC CCCAGAGTCT CTGTTTTACT TCATCCAGCA TGCATTCGTC TGAATATTAT TACCAGGTTA AGCCCCGGCA
GGCACCACTG TAGCCGATCT TGTACTACTC GTTAAAGGCA AACCACAAAA AGTTTTTGCG C

>Vigan.06G192300.01
ATGTTAGATC TTAATCTCAA TGCTGAGTGG ACCGATTCGG CTCGTGACGG CGACTCGCCG GTTCCGTTAG AGGAGTTTCC
TGAAGGTTCG CGGAACCAAA TGGCGGAATC AGGGACTTCG AATTCCTCTG TGGTGAATGC GGACGGGTCC AGTAACGGCT
GCTGCGACGA GGACTCGTGC TCCACGCGCG CTGATGACGT GTACACCTTC AATTTCGATA TCCTTAAAGT GGAAGGCGCG
AGCGACGTCG TAACGAAGGA GTTGTTTCCG GTGAGTGGAG GAGTGGCAAC GTCGTCGTTT TCGGCGAGAA AAAGTTTCGT
GGATCTCGCG TTCGATCGTG AGGGAGGAAA CAGTGACATA AAGATGCTTC AGCCGCAGCC TCAGACTCAG ACTCAGCAAC
CGGCGAAGAA GAGTAGGAGA GGACCAAGGT CTCGAAGCTC ACAGTACAGA GGGGTTACCT TTTATAGAAG AACGGGAAGA
TGGGAATCGC ATATCTGGGA TTGCGGGAAA CAAGTCTATT TGGGAGGATT TGACACGGCT CATGCTGCTG CTAGAGCCTA
TGATCGAGCT GCTATTAAGT TCAGGGGAGT TGATGCTGAC ATCAATTTCA ATCTGAGTGA TTATGAGGAT GATCTTAGAC
AGTTGAAGAA TTTGTCCAAG GAGGAATTCG TACATATACT GCGCCGCCAA AGTACTGGTT TCTCAAGAGG AAGTTCTAAA
TACCGAGGAG TTACTCTCCA CAAGTGTGGC CGGTGGGAAG CTCGAATGGG ACAATTCCTT GGCAAAAAGT ATATATATCT
TGGATTATTC GACAGCGAAG TAGAAGCTGC AAGGGCTTAT GACAAGGCAG CTATCAAATG CAACGGAAGG GAAGCAGTGA
CCAACTTTGA GCCAAGTACA TACGAAGGAG AGATGAAATC TGCAGCCACT AATGAAGTTA ACAATCATAA TCTTGATCTC
AATTTGGGCA TAGCAACCCC AGGAACTGGG TCCAAAGAAA ATTGGCAGCG ACTTCAGTTC CCCTCTGTCC ATTACAACAC
GCATGGTGGA ATAAGTTCAA TGATGGAAAC AAATGTTGAT TCAGGAGTTG GTAATCCATC TTTGAAAAGA CTGGTTGTGA
ATGAAGACTG TCCTTCTGTA TGGAATGGAA TGTGTCCTAG TTTCTTTCCC AATGAGCAGG AAAAAACAGA GAGAATGAAC
ACGGAGCATT CGAAAGGACT GCCCAATTGG GCGTGGCAAA CGCATGCCCA GGTCAATGCT ACCCCAGTAC CAACGTTCTC
TGCTGCAGCA GCATCATCAG GATTCTCAAT TTCAGCTACC TTTCCTCCCA CTGCCACCTT TCCAACAAGA TCTACGAACT
CCAATCCCCA GAGTCTCTGT TTTACTTCAT CCAGCATGCA TTCGTCTGAA TATTATTACC AGGTTAAGCC CCGGCAGGCA
CCACTGTAG

>Vigan.06G192300.01
MLDLNLNAEW TDSARDGDSP VPLEEFPEGS RNQMAESGTS NSSVVNADGS SNGCCDEDSC STRADDVYTF NFDILKVEGA
SDVVTKELFP VSGGVATSSF SARKSFVDLA FDREGGNSDI KMLQPQPQTQ TQQPAKKSRR GPRSRSSQYR GVTFYRRTGR
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNLSDYED DLRQLKNLSK EEFVHILRRQ STGFSRGSSK
YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEVEAARAY DKAAIKCNGR EAVTNFEPST YEGEMKSAAT NEVNNHNLDL
NLGIATPGTG SKENWQRLQF PSVHYNTHGG ISSMMETNVD SGVGNPSLKR LVVNEDCPSV WNGMCPSFFP NEQEKTERMN
TEHSKGLPNW AWQTHAQVNA TPVPTFSAAA ASSGFSISAT FPPTATFPTR STNSNPQSLC FTSSSMHSSE YYYQVKPRQA
PL*