GBrowse Details

Vigan.06G156100.01

Basic Information:
Name: Vigan.06G156100.01
Multiple alignment
Variant Information
Position: Chr06:28811708..28815427 (+ strand)
Length: 3720
Functional Information:
Description: Similar to Expp1 protein. [Q2HPL4, Solanum tuberosum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.16,0.88,7.39,6.45,3.37,17.61,7.45,6.75
Arabidopsis thaliana homolog: AT3G44150.1
Automatic updates:
Name: NM_001253998 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100818051 (LOC100818051), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:28811708..28811904 (+ strand)
Length: 197
Type: five_prime_UTR
Position: Chr06:28811905..28812204 (+ strand)
Length: 300
Type: CDS
Position: Chr06:28814750..28814857 (+ strand)
Length: 108
Type: CDS
Position: Chr06:28814947..28815258 (+ strand)
Length: 312
Type: CDS
Position: Chr06:28815259..28815427 (+ strand)
Length: 169
Type: three_prime_UTR

>Vigan.06G156100.01 class=Sequence position=Chr06:28811708..28815427 (+ strand)
ACCAAATTTG CCACCATCCC AGAACTCTAA TCACCTTTTT CTTCTTATAG CTCTCCAAAG TTTGTAACTT TACATGGTAG
GATAAAAATC AGTTACACCC CGTTAGTAGC CAGTAGATTC AAAGTTGAGG GGAAAGAAGA AAACAAAAGC TTGGAACTCC
TACCACACTA TCATCATCAT CAAATCCAAA CACAACAATG GCAGCGAAAG GGGCATTGTG GTTGATGATG CTGCCACTGG
TAGTACCTGT TGTTATTGCC ACTAACACCA ACAACGTGTA CCAGCCTTGT GCTGATGCCA AGATTCAGAG ATCTGATGGC
TTCACTTTTG GCATTGCCTT CAGTTCCAGG GAGTCTTTCT TCTTCAATCA GTCCCTTCAG CTCTCTCCCT GTGACCATCG
TCTTTCTCTC TCGTCCTCCA ACTCACAGCT TGCTCTCTTT CGTCCCAAGG TTGATGAGAT CTCTCTCCTC ACCATCAACA
CCTCTAGTTT TTTCCCTGTA AGTAACAGTG TTACCTCTCA TCTCGTTTTC TCACCATCTG GAGTTATTCT TTGATCGTTT
TTTTATCTGG GTCTCTGGCT GATTGAAACT GATGATATCC ATTTGTTTCT CTTGGTTGTT GACTTTTGGG GCTATAATCT
TACTGTGATA TGGATGTTTG ATTTTGTTTG TGTTGAAAAG TTTGGAACTT TGAGGTGATA TGTTGATTGT ATTCATAGAA
ATTTATCGTT TTGTACCATA AATATAGAAG ATAGTAAGAG AAGACAATGC TCAGGATAAA ATAGTCGACA TGGTGATATT
GTTGTACGAA TCAGTGATGT ATATCAGATG AAGACTATAT TTGGATAAAT TTTATTGGTA TAAAATTTTT GTACAAAATT
AGTTAGTTGG TGTGATAGAG ATAGAGGTAA AAGATAATGT TAAAGGAAAT GGTGGATGAT ACCATTGTAC AGACAAGGGA
TCCCTTATAT TTATGTGTTA TAATTTTCAT TGTAGAATAT GGGATGGGGA TAATGGGATT GTGGCTTCTG TTCATTGGTT
GGTCAAGTGG GGCATTTCTG TATTTGATAT TGACTTGGTG ACTTCTCGGG TTTGTTGTAG TTCTTGTGAG CGATGAATTC
ATCTTTCGTG TCATGGTGAG GGTTCAACAA TCATTCGATA TTCTTTTGGA AAATATGAAT TTGGTCTGGG AAAATGTTAG
ATGTAGAAAT AAGTTTTCAT ACATTTTTAT AGCTGTTATA CGACTTTCTC GTTCGACATG ACCAATGAAC CTAATTTTCT
GTTCTAGTTA TGGCAAGAAG AAATTAAGCT GTACGAGGTG GTTATTGAGG TCGTTGAATG TCATAAATCA GCTTTAAAGT
GTTTTAGATG AGATATAAGA GGTTATTTAT TATTGTAGCA CATGGAGGAG AAATTGCTAT GTATTTCAGA GACTTGTGCT
CCAAAATAGA AACATCAAAT ATGGCACAAT ATACCATGTT GCTGAAAGAT CAACTAGAGC TTTGGTCAAA ATGGTAAACC
TAAGCCAGGG AATAGAGATT CAACCCCCAT TGCAGTAATA CCCATCATAT CATGCACGCC CTGTCCTGAA TCCTGCTTAA
AGCAGTTAGG TACAATGAGC AAACCTGACC TATATTCTTT GCATTTAGGT AATAATGTCA TTTTCTTTTG TTTTTGCATT
GTGCTAATTA AATTTTTTCT CTTGCTAGTA TTTGCCTCTA TAGGATTGGA ATAGTCCTCA TCCACCAGTT TCAGCCATAA
TGTATTTTTA CTATGTTGAC ATGTTACTAT GTATTAGTCA ATAGGTTTAT CTTTAACTCG ATCTCACAAA ACTGGCTTAT
AGTGGAGATT GCATCCTATT TATATATTAC AATTTGACTT TTTTTCTAAT TGATATAGAA TCTTCAACAC ACTCTCTCAT
GCTGAGGAAT AAACATTTTG AATGTTGGAT TAGATATTTG TGGGTGGCTT AAGAAGAGCA CAATATTCGG TGACAGAATA
GCCTTAATGA ACTTGATTAA GATGAACTGT TTTTTTCTTA ATTACTATGA AGATAAATCC TGATAACCTG CTATTTACAA
ACTATTTCCC CTTATTCTTG TTTTAGCTCC AACTTAAAGT TAAGCCACCC CTTATTGGTA CAGCTGTTCA ACTTGATTGC
ACACAGTGTA CTGACCAAAT TATCTATTTT TTTTTATGTA TTTATCTTCA CTGTTGAAAT TAAACCACTC CTCAACGAGT
ATATGCTGAA GTCAGGCCAA CTTGGCAGTA TTTCTATTTC TGTTTGACAT GACAAATTTG TTTAACACAT TGTAGAAGAT
GTATGTACAT ATGTTCAACA TAAACTCAAA TTAAGATAGT AAAGCTAACT GTGACTCTTA ACTGTTAGGA TTGCAGTATG
CAAATGACTC TTAACTATTA GGCTCATTCA CATGTACGTA GACATAAAAT CAATAACCAC AAATTCAAAT AATTAGGCTG
CATAATCTAA AGTAAGGAGG TTGCTACTTT TAGAGAAGAA AAAAAATTAG ATGTACTATT AGTGTAAAAA AAAATTTAGG
TCACAACTGG TTAGAAATCA TGGGAGGAAT GAATTTTCAT TGTAATTCGG TACAGTTGTT GTCTAAGTTG ACAAACTCAT
CATATATGGT GATTTTAACA GATGACTTTT GTAAAAACTT TTTACACTGC TATTGTATAT TATGATTTTT GTATGGAATT
TGAAAATTCA GTTAATAATA AAATGGCTTT TGTTATGTTT TTCATGAAAC ATTCAAATTC ACAAGATTGT TATTGTTATA
CAAGTTCCCT GGTTGACTTT AAGTATTGGA GGAGGCTATA CTCAAACATC CGTTTGAAAC GCTTATGCTT TGATAGGATA
GAATTGAAAA TCACAAGTCA TGGTAACTTG CACTGGGATC CCTTAAACCA ACTTTTGTTA CCCTGGAAGC AAAAATGAGA
ACCACAGGCT GAAATAAAAC TTGCATTAAC AGTGGCATCA TAACAACTAA TTTATAACTT TCATTTTCAT CTCAATGAGT
AGGATAGTTA TGGTGGATAT ATGGTGGCAT TTGCTGGGAG AAAGTATGCT GCACGGTCTC CACTTGCATT TGTTGCAAAC
AGCACATATA CAGTGACAAG TTTCACACTG GTAAGAGATG TAGGTCATGG ACATGATGAG TTGAGTTTTG TTTAGTTATT
GAAAAATCTA AGGTGTGGTT GGACTTTCCA TTTGATTAGG TGCTGGAGTT TCAGAAGGGT AGGCTGCAGA ACTTGTACTG
GAAGAGAGAT GGTTGCTCTT CATGCAAGGG AAAATCCAAC TTTGTTTGCC TCAACAAACA AGATTGTGCT ATCAGAACAT
CATCTTGTAA AGGCAGAGGA GGGGCAGTAG ATTGCAGTCT AGGAATTCAG CTAGCATTTT CTGGTACAGA CAAGCATCTA
TCAGTGCTTA ATTCATGGTA TGAAGTGGAA AATCTGCGGC AGTACTCTCT CTACGGCTTG TACTCAAATC TGAGGGACTC
TCTCACCAGC CAGTATAACA AATTCTTTTA ACAACATAAA GAAAATTTCT TCCCATGGAT TGTTTTAATG GTTTGGGGAT
GGTATTGTAA CTTCTGTGAC TATATTGTTC TTTGCCTTCT TATTTGTTAC TTCATATTTA TTGCATACCA GTTTTTGGTT
TATGTCAGCA TTACATGAAG AGAATTTGTA CATTCTTGCA 

>Vigan.06G156100.01
ACCAAATTTG CCACCATCCC AGAACTCTAA TCACCTTTTT CTTCTTATAG CTCTCCAAAG TTTGTAACTT TACATGGTAG
GATAAAAATC AGTTACACCC CGTTAGTAGC CAGTAGATTC AAAGTTGAGG GGAAAGAAGA AAACAAAAGC TTGGAACTCC
TACCACACTA TCATCATCAT CAAATCCAAA CACAACAATG GCAGCGAAAG GGGCATTGTG GTTGATGATG CTGCCACTGG
TAGTACCTGT TGTTATTGCC ACTAACACCA ACAACGTGTA CCAGCCTTGT GCTGATGCCA AGATTCAGAG ATCTGATGGC
TTCACTTTTG GCATTGCCTT CAGTTCCAGG GAGTCTTTCT TCTTCAATCA GTCCCTTCAG CTCTCTCCCT GTGACCATCG
TCTTTCTCTC TCGTCCTCCA ACTCACAGCT TGCTCTCTTT CGTCCCAAGG TTGATGAGAT CTCTCTCCTC ACCATCAACA
CCTCTAGTTT TTTCCCTGAT AGTTATGGTG GATATATGGT GGCATTTGCT GGGAGAAAGT ATGCTGCACG GTCTCCACTT
GCATTTGTTG CAAACAGCAC ATATACAGTG ACAAGTTTCA CACTGGTGCT GGAGTTTCAG AAGGGTAGGC TGCAGAACTT
GTACTGGAAG AGAGATGGTT GCTCTTCATG CAAGGGAAAA TCCAACTTTG TTTGCCTCAA CAAACAAGAT TGTGCTATCA
GAACATCATC TTGTAAAGGC AGAGGAGGGG CAGTAGATTG CAGTCTAGGA ATTCAGCTAG CATTTTCTGG TACAGACAAG
CATCTATCAG TGCTTAATTC ATGGTATGAA GTGGAAAATC TGCGGCAGTA CTCTCTCTAC GGCTTGTACT CAAATCTGAG
GGACTCTCTC ACCAGCCAGT ATAACAAATT CTTTTAACAA CATAAAGAAA ATTTCTTCCC ATGGATTGTT TTAATGGTTT
GGGGATGGTA TTGTAACTTC TGTGACTATA TTGTTCTTTG CCTTCTTATT TGTTACTTCA TATTTATTGC ATACCAGTTT
TTGGTTTATG TCAGCATTAC ATGAAGAGAA TTTGTACATT CTTGCA

>Vigan.06G156100.01
ATGGCAGCGA AAGGGGCATT GTGGTTGATG ATGCTGCCAC TGGTAGTACC TGTTGTTATT GCCACTAACA CCAACAACGT
GTACCAGCCT TGTGCTGATG CCAAGATTCA GAGATCTGAT GGCTTCACTT TTGGCATTGC CTTCAGTTCC AGGGAGTCTT
TCTTCTTCAA TCAGTCCCTT CAGCTCTCTC CCTGTGACCA TCGTCTTTCT CTCTCGTCCT CCAACTCACA GCTTGCTCTC
TTTCGTCCCA AGGTTGATGA GATCTCTCTC CTCACCATCA ACACCTCTAG TTTTTTCCCT GATAGTTATG GTGGATATAT
GGTGGCATTT GCTGGGAGAA AGTATGCTGC ACGGTCTCCA CTTGCATTTG TTGCAAACAG CACATATACA GTGACAAGTT
TCACACTGGT GCTGGAGTTT CAGAAGGGTA GGCTGCAGAA CTTGTACTGG AAGAGAGATG GTTGCTCTTC ATGCAAGGGA
AAATCCAACT TTGTTTGCCT CAACAAACAA GATTGTGCTA TCAGAACATC ATCTTGTAAA GGCAGAGGAG GGGCAGTAGA
TTGCAGTCTA GGAATTCAGC TAGCATTTTC TGGTACAGAC AAGCATCTAT CAGTGCTTAA TTCATGGTAT GAAGTGGAAA
ATCTGCGGCA GTACTCTCTC TACGGCTTGT ACTCAAATCT GAGGGACTCT CTCACCAGCC AGTATAACAA ATTCTTTTAA

>Vigan.06G156100.01
MAAKGALWLM MLPLVVPVVI ATNTNNVYQP CADAKIQRSD GFTFGIAFSS RESFFFNQSL QLSPCDHRLS LSSSNSQLAL
FRPKVDEISL LTINTSSFFP DSYGGYMVAF AGRKYAARSP LAFVANSTYT VTSFTLVLEF QKGRLQNLYW KRDGCSSCKG
KSNFVCLNKQ DCAIRTSSCK GRGGAVDCSL GIQLAFSGTD KHLSVLNSWY EVENLRQYSL YGLYSNLRDS LTSQYNKFF*