GBrowse Details

Vigan.06G102700.01

Basic Information:
Name: Vigan.06G102700.01
Multiple alignment
Variant Information
Position: Chr06:19321275..19325284 (+ strand)
Length: 4010
Functional Information:
Description: Similar to transcription factor ILR3-like. [XP_004505433.1, Cicer arietinum]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:65.15,35.29,37.84,40.12,103.06,67.84,33.85,37.91
Arabidopsis thaliana homolog: AT5G54680.1
Automatic updates:
Name: KT031119 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_12 bHLH transcription factor (Glyma12g16560.1) mRNA, complete cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:19321275..19321411 (+ strand)
Length: 137
Type: five_prime_UTR
Position: Chr06:19321412..19321551 (+ strand)
Length: 140
Type: CDS
Position: Chr06:19322970..19323032 (+ strand)
Length: 63
Type: CDS
Position: Chr06:19323624..19323701 (+ strand)
Length: 78
Type: CDS
Position: Chr06:19323813..19323975 (+ strand)
Length: 163
Type: CDS
Position: Chr06:19324509..19324775 (+ strand)
Length: 267
Type: CDS
Position: Chr06:19324776..19325284 (+ strand)
Length: 509
Type: three_prime_UTR

>Vigan.06G102700.01 class=Sequence position=Chr06:19321275..19325284 (+ strand)
TACGCACACC ACACACCTAC GCACACCACA CACCTACGCA CACCACGCGC AGCCCCTGTT TGTTTTCCAG GAAAACAAAG
CAAAAACGCG TTTTCCGTGC GGAAAATCCT CAATTTTCCG GGAATCGAAT CTGCACAATG GTTTCCCGGG AAAACACCAA
TTGGCTCTTT GATTACGGCT TGATAGATGA TATTCCCGTC CCGGATGCCT CCTTCACCGT CCCTTCCTCC GGCTTCACAT
GGCCTCCTAA TGCCTTGAAT GCCACTTCCA ATGTCGGGTA TATGCAGATC GTTTTGCCAA TTGCCTTTTC CTTTTCAAGC
TTTCGATGCT GTATTCTCTG ATTTTTCTCC TTGACGTGAT TAGGGTTTGT GCTTTGTTGT TTGATTGGTT TGACTTTGTG
AATATTTGAT TTTAGGGCTG TGTTTAGGAA GCTCTACGGC TGTAGGATTT TGTCTTTTCC AATACATGTG ATTTATTTAT
TTATTTTATT TTTTTTTATT GGGAGGTTGT ATTTGATGAT TTTTGTTTTT AATGTTGCGT GATGGAATCT GGCCTAAGGG
GGTGTATAAT GTTATGTTTG AATTGAAGTT TGAAAAATGC TCTGATGAAT TTTGATGTAC TAAATGAAGA AGAAGAAAAC
TGTTTCTTTT AGAGGAATGG TACTTTTAAA CTCTCCCAAC TTCAATCCAG ACATGGACTG GCTGGAATTA ATTCTAGCGC
CTCGGGACAT TCTTGCATGA GATAGCTTTA ATTTCTTAAT TGACTGTTTA GATTATTCTA TTGATGTATT TTTCTGTCTT
GTTTTCAAGG CAATGTGTTG TTTTGGAACT GTGGATTGTC TTAATTCAAG CTTTTTTAAT CAATATTTGT GTAATTATGT
TGATTGTATA TGAAGTTGAA GATCATTTTC TACCTCCTAG CTAGGTGGTT AGTTACTTTC TTAAGTTATA GGGTCATCTT
AATTCTCATA TAGGAGTCCA GCTAGGTGGA TCAAATGAAG ATGTGCTTCA GTCATAACTT ATAATCGTGG AGGTTATTGT
TTAAGACTAG GTGAGATTAT TCTGTGTAGT TATGACTTAC AATTTTTAAT GCACTAATGA AGTGAATGTT ATGGATAAGA
AATGAATGTG TAAGAGACGA GAATGGTGAG GTGAATCATT GGATTGGTGA AAGTATGCAA TGAGAGAGGT TTGTAATAGG
AGAAGGGGAT ATTCTAGTTT GTGTTATGAG ACACCATTAA GAAAAGTGTT TTGTAAATGG TTTTACTAAA ATTTGGCTAC
TGCTAGAGCC AAATAAAGCA ACACCTGAGA TAAATTAGAT TATTGTTCTA ACTCCCAATA GTGAAATTTT CCTCTGTAGG
TTTTAACAAT ATGAGAATGA GAAATGATTT TATACATAAT CATGCTGATA ATTTATCAAT TTTGTAAGAT TCCTATAAAA
TATGGAATGC TACATTTTTA ATACCATTCT TATTAATATA TTCTTATGTA AAGCATATAT TTCAATTCTC GTATACTCAA
ATGTTTTCTT TTACATTTTG TCACTTGAGG CCATACACTT TTTGTTTGTC AAACATGGCT TCTGAAATTG TTCATAATAC
ATTATTCAGA TTTCTATCTG CCTCTTTATA CATGTCCTCA TAATAAACAA TTTCTTTTAC TGCCTTGTCT TTCTTACACC
ATTATGTTCT CCTAGTGTTG AAGCTGACGG TTCACTGGTG GATTCTGATG GTCTCAAAGA GTCTGGCTCA AAGAAGAGGT
ACACAGTGTT CTATTAGCCT TTCATTTTTA TTGAATGAAA TAATTTTGTT AAAGGAAAAA AAAAAAAGAA TCAACATGTG
TATCTTATTC TGAAACACCT CTTCTGTAGC TTTTTTTTCT TTGCTTGATT TCCTAATCTC TCTTTTGCTT GAGTGCTTCT
TTATATTACA AGTATTAAGA TGATTTAGTG TTTTTTTTTT TCGTTTTCTT TCCTTTTATA CGGTAATAAA TTAATAATGA
TTGCAGAATG AAGTGAAATC TTGAGGCAAT ACTAGTTGCT TAGCTAATTT ACAGAATTTG CTTGGCAATT GTCATAGATG
ATCTTCTATG AACTGACAGA TGTGTAGTAA TGTAGTGCAG TCATAGGGTG AGGCTAATTG GTGCAGTCAA CATATTGCAA
ATCCTTGCAT TGCATCTATT ATCTTTTTCG AGTATAACAT TATTTTTCTT GGCATAAGAT CAGATTTCCA AAATCATTTT
TCTTGTCTTA TTTCATTGAC TGCACTAATT TGGAATACAA AATTTGATCA AATGATTAAA CTTCTGAAAA AGGAGTGAAT
CCAATCTAGA TAGCTTTGTT CATTTGCAGG GTTAGATCTG AGACATGTGC TGCTTCTAGC ACCAAGGCAT GTCGGGAGAA
GTTGCGAAGA GATAAGCTTA ACGACAAGTA TACTTTCTAC TTCAAAATTT CAACTAGTTC CTGTCTTTCT ATACTCATCT
TGAGCTTTTA TGTGAATATG TAGCTGAGGC ATGTACCTAA TATGATGGAC ATTGTTAGGT TTGTTGAATT GGGCTCCATT
TTGGAGCCTG GAAGGCCTAC GAAAACTGAT AAGGCTGCTA TCCTGATTGA TGCTGTCCGT ATGGTGACAC ACTTACGGGG
TGAAGCGCAG AAGTTGAAAG ACTCTAATCA GGGTCTTCAA GAAAAGATTA AAGAGTTAAA GGTGATACTC ATATTTGAAT
GACTTTTTGG GTTGGAAGTT ACATATTGTG GATCACTTGG GGAGAAATTT GTTTAGGGAA GTATTTCCTG TTTGAGAAAT
GATAACAACA TACTCTACTA TAAGTTAGAT ATTTTGGAAA TTCACAAATT TTGGTTGGTT CCACTACTTT TTTAGTGATT
CTCTCCTGAT ATTGTAGTTC TCAAGAATTT TAGCCAATCA TAAAGTGTGT GTGTGTGTGT GTTAGAGAGT GTGTTCCTAG
TTCTCCTCTT TCTGTTTTCA CATTAAATTA CATAAGTTCC ACCTTTATTT TTATTGTTTT CAAAGATTTA TATAGCAACG
AAGCAAACTG TTTCCTATCA AACTGTTGAA ATAAAGTGGA AGCAAGATGA CATTTCTGTA ACTAAAGTAA AAGTAGTAAC
ATATTTTTCG AATCCAATGG CAGCGTAAGT TTTCTGCCTC CACTTTTTTT CCTAACACTG AAAAATTCAC AATTCTAATT
GTTTCTGAAA TCAAATTCCT TACATGTTGT GTAGGCTGAG AAGAATGAAC TTAGGGATGA GAAACAGGTG CTCAAGGCAG
AGAAGGAGAA GTTGGAGCAG CAGCTGAAAT CTTTGAATGC ACAACCCAGT TTCATGCCTC CCCCTGCTGC TATCCCTGCT
GCATTTGCGG CGCAAGGCCA AGCCCACGGA AACAAGTTGG TACCTTTTAT TAGTTATCCT GGAGTTGCAA TGTGGCAATT
TATGCCACCT GCTGCAGTGG ATACCTCACA GGATCACGTA CTCCGTCCAC CAGTTGCCTA AGCTGGCACT GTACAATTCT
CTGAGCTTGC ATTTTGGCCC AGAGTTGTAT CCATTTTACC AATACCTTCT TGGCTTTGTT AGTTCTCTTC CAAGTATTCT
AACTGGACCC AGTGGTGACA ACGGTCTGTA TTTGGCATAT GATACTATTA TGATTAATGT TGTTATTTGC TTGTAAATGT
TAAATAAGCT TGTCTGTCTA GCTGTCCTCG TCTCAGTTTT AATACTAGCT ACTGGATTCT AAGATAATCC GATTTTAGGT
TCACAGTAAC ATTATTTCAG CTTAGGCCAT GCAAAATAGG TGAGAGGGCA TTGTTGCTAG TAGAAGATAT AGATAGGTTT
TAACAATCGA GGAAGCAACA GAGCTATAGT GCTCCAGTTT TCAATTTAGT GCTGCCATAT TTCCTTACGC AAGCAAAGAT
TGTTAACTTA CATTATCCAA AATCTCTGCT GAATTATTTA GACAATGGTA ATTAAATCCA TAAAAAAAGT TTTAATGACA
ATACATAAGA 

>Vigan.06G102700.01
TACGCACACC ACACACCTAC GCACACCACA CACCTACGCA CACCACGCGC AGCCCCTGTT TGTTTTCCAG GAAAACAAAG
CAAAAACGCG TTTTCCGTGC GGAAAATCCT CAATTTTCCG GGAATCGAAT CTGCACAATG GTTTCCCGGG AAAACACCAA
TTGGCTCTTT GATTACGGCT TGATAGATGA TATTCCCGTC CCGGATGCCT CCTTCACCGT CCCTTCCTCC GGCTTCACAT
GGCCTCCTAA TGCCTTGAAT GCCACTTCCA ATGTCGGTGT TGAAGCTGAC GGTTCACTGG TGGATTCTGA TGGTCTCAAA
GAGTCTGGCT CAAAGAAGAG GGTTAGATCT GAGACATGTG CTGCTTCTAG CACCAAGGCA TGTCGGGAGA AGTTGCGAAG
AGATAAGCTT AACGACAAGT TTGTTGAATT GGGCTCCATT TTGGAGCCTG GAAGGCCTAC GAAAACTGAT AAGGCTGCTA
TCCTGATTGA TGCTGTCCGT ATGGTGACAC ACTTACGGGG TGAAGCGCAG AAGTTGAAAG ACTCTAATCA GGGTCTTCAA
GAAAAGATTA AAGAGTTAAA GGCTGAGAAG AATGAACTTA GGGATGAGAA ACAGGTGCTC AAGGCAGAGA AGGAGAAGTT
GGAGCAGCAG CTGAAATCTT TGAATGCACA ACCCAGTTTC ATGCCTCCCC CTGCTGCTAT CCCTGCTGCA TTTGCGGCGC
AAGGCCAAGC CCACGGAAAC AAGTTGGTAC CTTTTATTAG TTATCCTGGA GTTGCAATGT GGCAATTTAT GCCACCTGCT
GCAGTGGATA CCTCACAGGA TCACGTACTC CGTCCACCAG TTGCCTAAGC TGGCACTGTA CAATTCTCTG AGCTTGCATT
TTGGCCCAGA GTTGTATCCA TTTTACCAAT ACCTTCTTGG CTTTGTTAGT TCTCTTCCAA GTATTCTAAC TGGACCCAGT
GGTGACAACG GTCTGTATTT GGCATATGAT ACTATTATGA TTAATGTTGT TATTTGCTTG TAAATGTTAA ATAAGCTTGT
CTGTCTAGCT GTCCTCGTCT CAGTTTTAAT ACTAGCTACT GGATTCTAAG ATAATCCGAT TTTAGGTTCA CAGTAACATT
ATTTCAGCTT AGGCCATGCA AAATAGGTGA GAGGGCATTG TTGCTAGTAG AAGATATAGA TAGGTTTTAA CAATCGAGGA
AGCAACAGAG CTATAGTGCT CCAGTTTTCA ATTTAGTGCT GCCATATTTC CTTACGCAAG CAAAGATTGT TAACTTACAT
TATCCAAAAT CTCTGCTGAA TTATTTAGAC AATGGTAATT AAATCCATAA AAAAAGTTTT AATGACAATA CATAAGA

>Vigan.06G102700.01
ATGGTTTCCC GGGAAAACAC CAATTGGCTC TTTGATTACG GCTTGATAGA TGATATTCCC GTCCCGGATG CCTCCTTCAC
CGTCCCTTCC TCCGGCTTCA CATGGCCTCC TAATGCCTTG AATGCCACTT CCAATGTCGG TGTTGAAGCT GACGGTTCAC
TGGTGGATTC TGATGGTCTC AAAGAGTCTG GCTCAAAGAA GAGGGTTAGA TCTGAGACAT GTGCTGCTTC TAGCACCAAG
GCATGTCGGG AGAAGTTGCG AAGAGATAAG CTTAACGACA AGTTTGTTGA ATTGGGCTCC ATTTTGGAGC CTGGAAGGCC
TACGAAAACT GATAAGGCTG CTATCCTGAT TGATGCTGTC CGTATGGTGA CACACTTACG GGGTGAAGCG CAGAAGTTGA
AAGACTCTAA TCAGGGTCTT CAAGAAAAGA TTAAAGAGTT AAAGGCTGAG AAGAATGAAC TTAGGGATGA GAAACAGGTG
CTCAAGGCAG AGAAGGAGAA GTTGGAGCAG CAGCTGAAAT CTTTGAATGC ACAACCCAGT TTCATGCCTC CCCCTGCTGC
TATCCCTGCT GCATTTGCGG CGCAAGGCCA AGCCCACGGA AACAAGTTGG TACCTTTTAT TAGTTATCCT GGAGTTGCAA
TGTGGCAATT TATGCCACCT GCTGCAGTGG ATACCTCACA GGATCACGTA CTCCGTCCAC CAGTTGCCTA A

>Vigan.06G102700.01
MVSRENTNWL FDYGLIDDIP VPDASFTVPS SGFTWPPNAL NATSNVGVEA DGSLVDSDGL KESGSKKRVR SETCAASSTK
ACREKLRRDK LNDKFVELGS ILEPGRPTKT DKAAILIDAV RMVTHLRGEA QKLKDSNQGL QEKIKELKAE KNELRDEKQV
LKAEKEKLEQ QLKSLNAQPS FMPPPAAIPA AFAAQGQAHG NKLVPFISYP GVAMWQFMPP AAVDTSQDHV LRPPVA*