GBrowse Details

Vigan.06G020000.01

Basic Information:
Name: Vigan.06G020000.01
Multiple alignment
Variant Information
Position: Chr06:2230892..2234045 (+ strand)
Length: 3154
Functional Information:
Description: Similar to Aspartic proteinase nepenthesin-1-like protein. [T2DNA5, Phaseolus vulgaris]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: aspartic-type endopeptidase activity (GO:0004190)
InterPro: Aspartic peptidase (IPR001461)
Aspartic peptidase domain (IPR021109)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.21,0.51,87.27,5.55,45.04,132.24,14.48,33.37
Arabidopsis thaliana homolog: AT3G54400.1, AT5G07030.1
Automatic updates:
Name: NM_001254638 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aspartic proteinase nepenthesin-1-like (LOC100819698), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:2230892..2231057 (+ strand)
Length: 166
Type: five_prime_UTR
Position: Chr06:2231058..2231528 (+ strand)
Length: 471
Type: CDS
Position: Chr06:2232268..2232742 (+ strand)
Length: 475
Type: CDS
Position: Chr06:2233336..2233700 (+ strand)
Length: 365
Type: CDS
Position: Chr06:2233701..2234045 (+ strand)
Length: 345
Type: three_prime_UTR

>Vigan.06G020000.01 class=Sequence position=Chr06:2230892..2234045 (+ strand)
CTTTTTAAAG CTTTTATTTT TATCTTTCTC TTAATTCATC ACACACCTCC AAAATCACAT AAAAGTTTCC TAGAAATAAA
AGCTGCCATA AGGTTTTTCA CTATATATAT ACAAGACGGA GTCCATAGGC ACCAACCACA CAGCAGTCTC AACCTTAGCC
ATAACCATGA AAACCTCACC TATGCTCAGT CCTCTGGTGC TCTTCCTCCT CTTCTCCCTA GCCAAAGGGC TGAACCCTAA
CTGTGATGTC CATGAGCATG GCTCAACCCT TAAAGTGTTC CATGTGTTCA GCCCTTGTTC CCCATTCAGG CCCTCAGAGG
GTCTGTCATG GGAAGAGAGT GTCCTACAGC TAGAGGCCAA GGACCAGGCC AGGATGCAGT ACCTTTCCAA CTTGGTAGCT
AGAAGGTCAA TTGTCCCAGT TGCCTCGGGC AGACAAATCA CACAGAGCCC TACATACATT GTTAAGGCCA AGATAGGTAC
CCCAGCTCAG ACCCTTCTCT TGGCCATGGA CACCAGCAAT GATGCTGCTT GGGTCCCTTG CACTTCCTGT GTTGGTTGCT
CTACACTCAA ACCCTTTGCC CCTGCCAAAT CCACCTCCTT CAACAAACTT CCATGTTCTG CTCCTCAGTG CAAACAGGTG
ATCAGATCAA CACAAACACT TTTCATCTCT ACATTCTGTA AAATCACATT CATTTTCTTA TAACTCTCAT CATACCAAAC
ACTACTTTTT CTGATCATGA ATTCTTTAGA TCTCCTAGTT TTTTAAAGGA TATTATTACA AGCTCAATTA TGACTGTTAT
CAGTTTATTT TTACCATCAT AATGTATTAG TTTTCGAGTT AAAAAAAACC ATATTTTTGG TGGATGCAGC TATACGACAT
TTGAGTCTTT GTCCTGTTCA AAAGTGAGGT TTTTATTTGT AACAGACATT AATCAAATGT TTGGAATGAT CGAAAAGAAT
GTATCTTTTC TTGGTCCGAT AACGACAAAA GGTCACGTGA GCTACCACTA AACACTGCAT TAACGAAAAA TAATAAATTT
CTTTTTGTAG TGTTTTTTTA TTTTAATCAA ACTTTATATG GAGAATCAAC ACGAAAAGAT TCAGTATTAA TTTAACTAAT
TTTCATTAAA ATATTACGTA CAATTGATGT TCTCTGCTTT ATCAAAATTA CTATTACAGG ATTTTTCACG CGCCGTCCAC
GGCGCGTAGG AATAGCGTAG TCATGAATAT TCCAATTGCA TTAAAAGCTT TATCCTACAA GTAGGTGAAT TAAGTTACCT
TGGGAGGCAA AAATAAAGTT CACGAGACTT GCGAACGTGG GAGTTTCCAT CTTCTATGGT CCACTTCACA TAACTCTAAG
TCTGTGAAAT TTTCAGGTAC CAAACCCCAC TTGCGGTGGA AGCGCGTGTT CATTCAACTT CACCTATGGC ACTTCTTCTG
TGGCAGCGGG TCTTGTCCAG GACACGGTTA CCCTAGCCAC CGACCCAGTT CCAGGCTACA CCTTTGGATG CGTTCAAAAC
GCAACAGGAA GCTCATTTCC AACACAGGGG CTATTGGGCC TGGGCCGAGG CCCATTGTCA CTATTGGCCC AAACCCAAAA
TCTCTACCGA TCCACATTCT CCTACTGCTT GCCCAGCTTC AAAACACTCA ACTTCAGTGG GTCACTGAGA CTTGGGCCTG
TGGCCCAGCC CAAGAGGATC AAGTTCACCC CTCTTCTCAA AAACCCTAGA AGGTCATCAC TGTATTATGT GAACTTGGTG
GCTGTTAGAG TTGGCCGGAG AAATGTTGAT ATCCCGCCGG AGGCTTTGGC GTTCAACCCC GCCACCGGTG CCGGCACCAT
TTTCGATTCC GGTATGCACA ATCAGTATAT AAGTTTTACT TTTTTTTTAT ATAATTATAA TAAAATCAAT AAATTTATCA
TATAGAATTA ATTTTTAATT GTTCCACAAT TTTTAAATAG GAAAAATGTA CTGTGAGCTG TCATTCATTA CAGTGGGGTT
CTTTGTCTTA ATCTAACACT ATTATATTGA CCAAAGTCAT AGTGATATGA TAGAGTGTCA TTAAAGGTTC ATATGATTAC
TTTTGTTTAT TTTGGATATT TTCTCTCAGA GAGTCTCCTG AATAATTGAA GCCTTTTCTT TCCCATTTTT TAAGAATAAA
CATAATTATA TGATGTTCAC GTGAAGACAA GATGGTCAAT TTTAAGACAA AATTGGAGTC AAAATGACAT AAAAGTGATT
TGACATGGTC ACTTTCATTC ATGCTCCACA TGTCTTTGTT TTACATTTCT AATCTAATTT CACACTCTCT TTTTATCTAT
AGGAGAAATT ATAGTAAAAC TTTATTACAT ATGTCACTCA TTTTCATTAT TATAAAATGC TACAAAAACA AATAAAACTT
ACGCTAATGT TTTTCCGTTT GATTTTCTAA TTCAATACTA CAAGGTACGG TGTTCACCCG GCTGGTTGAA CCGGCCTACA
CCGCCGTCCG GAACGAGTTC CGGCGGCGAG TCAGCGTCGG GAAGAAACTC ACCGTGACAA GGCTAGGAGG GTTTGACACA
TGCTACACGG TCCCCATAGT TGCGCCAACC ATAACGTTCA TGTTCTCCGG CATGAACGTG ACACTCCCGC CGGACAATAC
CCTCATACAC AGCACCGCCG GCAGCATCAC GTGCTTGGCC ATGGCGGCGG CGCCCGACAA CGTGAATTCG GTGCTGAACG
TGATCGCCAA CATGCAGCAA CAAAACCACC GTGTGCTCTA CGACGTGCCC AACTCAAGGA TCGGTGTTGC TCGTGAACTT
TGCACCTAAT ATGCATGCAT GACGATGAGT GGTTCTAGGT CAAAAAAATT TCATGATTTG TGGGAACAAT AATAACGATA
ATAGTGTTGG ATTGAAATTT GAAGTTACTC CTATGTTGGT GTTTGATCTA TATATGATAT GGGTAGGGTT TTGGCATATC
ACTTTATTGC TAAGTATATT TATAGGCATT GCAAAGTTAT ATTTGTAGCA TGAAAAATGG TTATGTTTGG AGCTTTGTAA
TGGTACGTGT CACGGGTTCA TATATATATA TGTAGCAATT AATTTCTTGT GTCGTTTATT GAGGTTGATT GAACTGATAA
TGACTTCATA TTTGGTACAA GTTCACGGGC TGTG

>Vigan.06G020000.01
CTTTTTAAAG CTTTTATTTT TATCTTTCTC TTAATTCATC ACACACCTCC AAAATCACAT AAAAGTTTCC TAGAAATAAA
AGCTGCCATA AGGTTTTTCA CTATATATAT ACAAGACGGA GTCCATAGGC ACCAACCACA CAGCAGTCTC AACCTTAGCC
ATAACCATGA AAACCTCACC TATGCTCAGT CCTCTGGTGC TCTTCCTCCT CTTCTCCCTA GCCAAAGGGC TGAACCCTAA
CTGTGATGTC CATGAGCATG GCTCAACCCT TAAAGTGTTC CATGTGTTCA GCCCTTGTTC CCCATTCAGG CCCTCAGAGG
GTCTGTCATG GGAAGAGAGT GTCCTACAGC TAGAGGCCAA GGACCAGGCC AGGATGCAGT ACCTTTCCAA CTTGGTAGCT
AGAAGGTCAA TTGTCCCAGT TGCCTCGGGC AGACAAATCA CACAGAGCCC TACATACATT GTTAAGGCCA AGATAGGTAC
CCCAGCTCAG ACCCTTCTCT TGGCCATGGA CACCAGCAAT GATGCTGCTT GGGTCCCTTG CACTTCCTGT GTTGGTTGCT
CTACACTCAA ACCCTTTGCC CCTGCCAAAT CCACCTCCTT CAACAAACTT CCATGTTCTG CTCCTCAGTG CAAACAGGTA
CCAAACCCCA CTTGCGGTGG AAGCGCGTGT TCATTCAACT TCACCTATGG CACTTCTTCT GTGGCAGCGG GTCTTGTCCA
GGACACGGTT ACCCTAGCCA CCGACCCAGT TCCAGGCTAC ACCTTTGGAT GCGTTCAAAA CGCAACAGGA AGCTCATTTC
CAACACAGGG GCTATTGGGC CTGGGCCGAG GCCCATTGTC ACTATTGGCC CAAACCCAAA ATCTCTACCG ATCCACATTC
TCCTACTGCT TGCCCAGCTT CAAAACACTC AACTTCAGTG GGTCACTGAG ACTTGGGCCT GTGGCCCAGC CCAAGAGGAT
CAAGTTCACC CCTCTTCTCA AAAACCCTAG AAGGTCATCA CTGTATTATG TGAACTTGGT GGCTGTTAGA GTTGGCCGGA
GAAATGTTGA TATCCCGCCG GAGGCTTTGG CGTTCAACCC CGCCACCGGT GCCGGCACCA TTTTCGATTC CGGTACGGTG
TTCACCCGGC TGGTTGAACC GGCCTACACC GCCGTCCGGA ACGAGTTCCG GCGGCGAGTC AGCGTCGGGA AGAAACTCAC
CGTGACAAGG CTAGGAGGGT TTGACACATG CTACACGGTC CCCATAGTTG CGCCAACCAT AACGTTCATG TTCTCCGGCA
TGAACGTGAC ACTCCCGCCG GACAATACCC TCATACACAG CACCGCCGGC AGCATCACGT GCTTGGCCAT GGCGGCGGCG
CCCGACAACG TGAATTCGGT GCTGAACGTG ATCGCCAACA TGCAGCAACA AAACCACCGT GTGCTCTACG ACGTGCCCAA
CTCAAGGATC GGTGTTGCTC GTGAACTTTG CACCTAATAT GCATGCATGA CGATGAGTGG TTCTAGGTCA AAAAAATTTC
ATGATTTGTG GGAACAATAA TAACGATAAT AGTGTTGGAT TGAAATTTGA AGTTACTCCT ATGTTGGTGT TTGATCTATA
TATGATATGG GTAGGGTTTT GGCATATCAC TTTATTGCTA AGTATATTTA TAGGCATTGC AAAGTTATAT TTGTAGCATG
AAAAATGGTT ATGTTTGGAG CTTTGTAATG GTACGTGTCA CGGGTTCATA TATATATATG TAGCAATTAA TTTCTTGTGT
CGTTTATTGA GGTTGATTGA ACTGATAATG ACTTCATATT TGGTACAAGT TCACGGGCTG TG

>Vigan.06G020000.01
ATGAAAACCT CACCTATGCT CAGTCCTCTG GTGCTCTTCC TCCTCTTCTC CCTAGCCAAA GGGCTGAACC CTAACTGTGA
TGTCCATGAG CATGGCTCAA CCCTTAAAGT GTTCCATGTG TTCAGCCCTT GTTCCCCATT CAGGCCCTCA GAGGGTCTGT
CATGGGAAGA GAGTGTCCTA CAGCTAGAGG CCAAGGACCA GGCCAGGATG CAGTACCTTT CCAACTTGGT AGCTAGAAGG
TCAATTGTCC CAGTTGCCTC GGGCAGACAA ATCACACAGA GCCCTACATA CATTGTTAAG GCCAAGATAG GTACCCCAGC
TCAGACCCTT CTCTTGGCCA TGGACACCAG CAATGATGCT GCTTGGGTCC CTTGCACTTC CTGTGTTGGT TGCTCTACAC
TCAAACCCTT TGCCCCTGCC AAATCCACCT CCTTCAACAA ACTTCCATGT TCTGCTCCTC AGTGCAAACA GGTACCAAAC
CCCACTTGCG GTGGAAGCGC GTGTTCATTC AACTTCACCT ATGGCACTTC TTCTGTGGCA GCGGGTCTTG TCCAGGACAC
GGTTACCCTA GCCACCGACC CAGTTCCAGG CTACACCTTT GGATGCGTTC AAAACGCAAC AGGAAGCTCA TTTCCAACAC
AGGGGCTATT GGGCCTGGGC CGAGGCCCAT TGTCACTATT GGCCCAAACC CAAAATCTCT ACCGATCCAC ATTCTCCTAC
TGCTTGCCCA GCTTCAAAAC ACTCAACTTC AGTGGGTCAC TGAGACTTGG GCCTGTGGCC CAGCCCAAGA GGATCAAGTT
CACCCCTCTT CTCAAAAACC CTAGAAGGTC ATCACTGTAT TATGTGAACT TGGTGGCTGT TAGAGTTGGC CGGAGAAATG
TTGATATCCC GCCGGAGGCT TTGGCGTTCA ACCCCGCCAC CGGTGCCGGC ACCATTTTCG ATTCCGGTAC GGTGTTCACC
CGGCTGGTTG AACCGGCCTA CACCGCCGTC CGGAACGAGT TCCGGCGGCG AGTCAGCGTC GGGAAGAAAC TCACCGTGAC
AAGGCTAGGA GGGTTTGACA CATGCTACAC GGTCCCCATA GTTGCGCCAA CCATAACGTT CATGTTCTCC GGCATGAACG
TGACACTCCC GCCGGACAAT ACCCTCATAC ACAGCACCGC CGGCAGCATC ACGTGCTTGG CCATGGCGGC GGCGCCCGAC
AACGTGAATT CGGTGCTGAA CGTGATCGCC AACATGCAGC AACAAAACCA CCGTGTGCTC TACGACGTGC CCAACTCAAG
GATCGGTGTT GCTCGTGAAC TTTGCACCTA A

>Vigan.06G020000.01
MKTSPMLSPL VLFLLFSLAK GLNPNCDVHE HGSTLKVFHV FSPCSPFRPS EGLSWEESVL QLEAKDQARM QYLSNLVARR
SIVPVASGRQ ITQSPTYIVK AKIGTPAQTL LLAMDTSNDA AWVPCTSCVG CSTLKPFAPA KSTSFNKLPC SAPQCKQVPN
PTCGGSACSF NFTYGTSSVA AGLVQDTVTL ATDPVPGYTF GCVQNATGSS FPTQGLLGLG RGPLSLLAQT QNLYRSTFSY
CLPSFKTLNF SGSLRLGPVA QPKRIKFTPL LKNPRRSSLY YVNLVAVRVG RRNVDIPPEA LAFNPATGAG TIFDSGTVFT
RLVEPAYTAV RNEFRRRVSV GKKLTVTRLG GFDTCYTVPI VAPTITFMFS GMNVTLPPDN TLIHSTAGSI TCLAMAAAPD
NVNSVLNVIA NMQQQNHRVL YDVPNSRIGV ARELCT*