GBrowse Details

Vigan.05G089500.01

Basic Information:
Name: Vigan.05G089500.01
Multiple alignment
Variant Information
Position: Chr05:6832378..6835662 (+ strand)
Length: 3285
Functional Information:
Description: Similar to AT3g20300/MQC12_5. [Q2HTI8, Medicago truncatula]
InterPro: Protein of unknown function DUF3537 (IPR021924)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.02,0.00,13.40,6.95,9.50,3.85,13.20,11.03
Automatic updates:
Name: NM_001253107 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100809035 (LOC100809035), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6832378..6832764 (+ strand)
Length: 387
Type: five_prime_UTR
Position: Chr05:6832765..6833163 (+ strand)
Length: 399
Type: CDS
Position: Chr05:6833762..6834211 (+ strand)
Length: 450
Type: CDS
Position: Chr05:6834599..6834908 (+ strand)
Length: 310
Type: CDS
Position: Chr05:6834998..6835131 (+ strand)
Length: 134
Type: CDS
Position: Chr05:6835132..6835662 (+ strand)
Length: 531
Type: three_prime_UTR

>Vigan.05G089500.01 class=Sequence position=Chr05:6832378..6835662 (+ strand)
CAGGAACGAC ACCAATTTGT GAATTATTTT CTCTCTCGCA GTTTTACTAA AATACGATGA CAGCTATAAT GGGATTGGTA
ACGCTGACAT CAATATCACA GCGATCATTC AGCTATTAAG TTCCTCTGAA AGAGTCCATC CTAAACCTTT AACTAATATG
AAATATTCAA AAGAGGGACA CAAGACATTG CATTATTGTT GCAGTTTAAA CTTTAGAAGA CAAGTAAAGA GTTTAGAGAA
AGCGACACCA TTTACATCCA AATTAAGATC CCTTACAGTA CTTCAGATTA CAATTGTCAA CACAATCACA TTCACACCCT
TTTGGATTTC TAGTTCCATG TCCTTTTATC TGATTCTAGT GCATGCCTAG ATTTCAATTT CGAGGCCATG GAAGAGGAAA
GAGGGAGTTT CCTGCCGAAC AACAAAGATG AGCTACTACC ACTTGATAGA ACAACAGAAT TGAAGAACTT CAGATCATAC
CTGAGATGGG TTTACGTGGA TCATTCCAAC GTGTGCAAAG CTGGTTTCTC TTGGTCCGTG TTCTTCACCT TGGCCTTTGT
TGTGCCCATA CTTTCACACT TTTTGCTTGA TTGCCCCACC TGCGATCAAG ATCATACTCG ACCGTACCAC ATACCAGTGC
AGATTTCTCT CTCCATCTTT GCAGCCCTCT CTTTCATCAG TATTTCTTCC TGGGATCGTA AATATGGCTT CAGCAAGTTT
CTCTTCCTTG ATAAATTAGG TGATGAAAGC CTCAAGATTC AACGAGGGTA CTCGGAACAG ATGCAGGTTT CTGTTCTCTT
TCCTCTTTTT TCTTTTTCCC TTTTTTTTGG TATGAGTTCT ATACGCAATT CTGAAGTGTC CCTTGTTCAA TTTTTTGTTT
GACTCACCCA ATTACAACGC TTGTGTCCGA AGTGCAAAAA AAAAGTAAAG AACACTACTA TGAAACATGT TCTTAGTTAG
CACTGACTAC AGGATTTCGT GATATGAGTT TTTAAGCTTA AGTAACACTA TCAAATTTCA ACTCAAGTAT ATATATATCA
ATACCACCAA ATATTAGAGT TTGATTCTAA CTCTATTTTC TCTTCCAATT TCTACATATC ATTCATTAAT ACTATACTTT
TATTTTTTAT ACAGTCCAGC CCTCTTTTAT TTGCAATAAT TAATCAGCAT ATCCTCTGAA TTGGCATGCA AAAGGGAGCA
CAATAGTGTT GTTTTGGCAA TTACATTATC AGTCTTATGT GATAAATATT TGGTCAGTGT TAAATAATCT GTTTGTTAAA
CAACATTCAC TGGTCAACGA ATATCAGCTG AGAGGATCAC TTGTTGGAGA ATAAATTTAA CTGGCATTAT TCAACATTCA
TGCTAACTGG GTCTAATTAT GCAGGGAACC ATGAAGCTCA TCTTGAGGTG GGGGCTTCCC TGTTTCATAG CAGAATTTGC
CTACAAGATA TGGTGGTACG TCTCAGGAGT TTCACAAATA CCACATTACG GTAATATATA CGTGAGCAGC ATCATTCTGT
GCACATTTGA GCTATGTTCC TGGCTTTATA GAACCTCCAT TTTCTTCCTG GTGTGTGTCC TCTTTCGACT TATCTGCTAC
TTGCAAATAC TCAGACTAGA TGAGTTTGCT CGAGTTTTTC ATCGAGAAAC TGAGGTGGGG TCAATCTTGC TGGAGCACCT
TAGATTGAGA AGGAATCTTC GGATCATAAG CCATCGTTTC CGAGTTTTCA TTCTATCTTC TCTGCTTTTG GTGACAGCAA
GCCAACTCAT TTTTCTGCTT ATGGTTACAA AAGCCCATGC AGATGTTGAT ATCATGAAGT CTGGAGAACT TGCGGTAAAG
CCTCTTCACT CCATTTATGA CTCCCATGGT AAACAGATCA ATCATGTTCT TATTCAAACA ACAATATGTC ATCACAAGCT
TCCTTACAAA GCTAATTAAA ATAAGTAAAA ATCATGGGTT TATAAATTTA GAGTTTACTA CTGATAATGT AAGGTCTTTT
ATATTATTGT CCAACCACAT TATGGATCAT TTCTACTTAG TTAACTGTAC AACAAATTGT ACTTATATAA CAATTATACT
CAAACTTATA CAAATGTTTT GAATTTTCTT CATAAGGGTC ATTAATTGAG AATTCTACTA TGCTTTTGTG CAAAATGTTT
GGCATGGTTC AAGCAGTAAA TAGTGCAAAT AGAATGTAAT AGGTTGTGTT TAATGTTGCA GTTAGTGTCG ATCACCCTGG
TGAGTGGACT TTTCTTACTC TTGCGAGGTG CAACCAAGAT CACACATAAA GCACACTCCG TTACAGGCCT TGCAGCTAAG
TGGCATATAT GTGCTACCAT AAATTCATTT GACAACATTG ATGGAGAGAC ACCAACAACT GCGCAAGCAA TTTCAGCCCA
AGCTATTGCT GCCAATATTA GTTGGGGATC ATCGGATGAT GAGGTGGGAG ATGAGGAGGA CGAGTTGGAT AACACAAAAT
TGCTGCCAAT TTACACCCAA ACAATCTCAT TTCACAAGAG GCAGGCTCTA GGTAAGTGGG GAATTTCTAT GAGGTAATTT
TCTTGTCTAA AGTATTAGCC CAATTTCGTT TTGTCCTGAG TTATCTGGCT TTTGATGCAG TGACATACTT GGAGAACAAT
AGAGCAGGAA TCACAGTGTT TGGGTTCATG CTTGACAGAT CCTGGCTCCA CTCCATTTTT GGCATTCAAA TGGCTCTTTG
CCTTTGGCTA CTTAACAAAA CAATTGGTGT TTAGGGACAG ATTGTAACTG TTGTTATGTG ATTCCTCTTA TCTTGTTTGT
TGTATATTTT TTTTTTATTT TCAACCGTTC ATTTGGATCT ATCTGGTTGT GATCTGTGAA ATGTGAACGA TACACGTTTG
CACCAGATTT TGCTGAGACT ATTTTGAATG TGACTGCATG TTCTACTACA GTACAAGGGA GCGAATTCTA GTATCGGATG
ACACAGGTAC AGGTACAGCA CATCGAATTG CAGAGGCAGA AACAAGCTTT TGGTTGTAAT ACATGACTGA AACATATATG
TAAGTGCTCA TTCGGCTTAT CGATCAAAGC AAAATAGTTA TTAATAGTGT GATAAAACAT ATTCACGTAC GTAGATTTTG
TATAATTTTT TTTTATTCAT TAATAACTAA AATTATTTGA TATCCTAGAA TTAGAAAAGT GAAAATGTAT CAGCTCCTTT
CTACTTCTGA GCAAAAGCCT ATATTCAATC GCAAAGAGTG GACTGTGATG CTACGTGTGT CAATCTGGAT CCTTAACCTT
TTAAG

>Vigan.05G089500.01
CAGGAACGAC ACCAATTTGT GAATTATTTT CTCTCTCGCA GTTTTACTAA AATACGATGA CAGCTATAAT GGGATTGGTA
ACGCTGACAT CAATATCACA GCGATCATTC AGCTATTAAG TTCCTCTGAA AGAGTCCATC CTAAACCTTT AACTAATATG
AAATATTCAA AAGAGGGACA CAAGACATTG CATTATTGTT GCAGTTTAAA CTTTAGAAGA CAAGTAAAGA GTTTAGAGAA
AGCGACACCA TTTACATCCA AATTAAGATC CCTTACAGTA CTTCAGATTA CAATTGTCAA CACAATCACA TTCACACCCT
TTTGGATTTC TAGTTCCATG TCCTTTTATC TGATTCTAGT GCATGCCTAG ATTTCAATTT CGAGGCCATG GAAGAGGAAA
GAGGGAGTTT CCTGCCGAAC AACAAAGATG AGCTACTACC ACTTGATAGA ACAACAGAAT TGAAGAACTT CAGATCATAC
CTGAGATGGG TTTACGTGGA TCATTCCAAC GTGTGCAAAG CTGGTTTCTC TTGGTCCGTG TTCTTCACCT TGGCCTTTGT
TGTGCCCATA CTTTCACACT TTTTGCTTGA TTGCCCCACC TGCGATCAAG ATCATACTCG ACCGTACCAC ATACCAGTGC
AGATTTCTCT CTCCATCTTT GCAGCCCTCT CTTTCATCAG TATTTCTTCC TGGGATCGTA AATATGGCTT CAGCAAGTTT
CTCTTCCTTG ATAAATTAGG TGATGAAAGC CTCAAGATTC AACGAGGGTA CTCGGAACAG ATGCAGGGAA CCATGAAGCT
CATCTTGAGG TGGGGGCTTC CCTGTTTCAT AGCAGAATTT GCCTACAAGA TATGGTGGTA CGTCTCAGGA GTTTCACAAA
TACCACATTA CGGTAATATA TACGTGAGCA GCATCATTCT GTGCACATTT GAGCTATGTT CCTGGCTTTA TAGAACCTCC
ATTTTCTTCC TGGTGTGTGT CCTCTTTCGA CTTATCTGCT ACTTGCAAAT ACTCAGACTA GATGAGTTTG CTCGAGTTTT
TCATCGAGAA ACTGAGGTGG GGTCAATCTT GCTGGAGCAC CTTAGATTGA GAAGGAATCT TCGGATCATA AGCCATCGTT
TCCGAGTTTT CATTCTATCT TCTCTGCTTT TGGTGACAGC AAGCCAACTC ATTTTTCTGC TTATGGTTAC AAAAGCCCAT
GCAGATGTTG ATATCATGAA GTCTGGAGAA CTTGCGTTAG TGTCGATCAC CCTGGTGAGT GGACTTTTCT TACTCTTGCG
AGGTGCAACC AAGATCACAC ATAAAGCACA CTCCGTTACA GGCCTTGCAG CTAAGTGGCA TATATGTGCT ACCATAAATT
CATTTGACAA CATTGATGGA GAGACACCAA CAACTGCGCA AGCAATTTCA GCCCAAGCTA TTGCTGCCAA TATTAGTTGG
GGATCATCGG ATGATGAGGT GGGAGATGAG GAGGACGAGT TGGATAACAC AAAATTGCTG CCAATTTACA CCCAAACAAT
CTCATTTCAC AAGAGGCAGG CTCTAGTGAC ATACTTGGAG AACAATAGAG CAGGAATCAC AGTGTTTGGG TTCATGCTTG
ACAGATCCTG GCTCCACTCC ATTTTTGGCA TTCAAATGGC TCTTTGCCTT TGGCTACTTA ACAAAACAAT TGGTGTTTAG
GGACAGATTG TAACTGTTGT TATGTGATTC CTCTTATCTT GTTTGTTGTA TATTTTTTTT TTATTTTCAA CCGTTCATTT
GGATCTATCT GGTTGTGATC TGTGAAATGT GAACGATACA CGTTTGCACC AGATTTTGCT GAGACTATTT TGAATGTGAC
TGCATGTTCT ACTACAGTAC AAGGGAGCGA ATTCTAGTAT CGGATGACAC AGGTACAGGT ACAGCACATC GAATTGCAGA
GGCAGAAACA AGCTTTTGGT TGTAATACAT GACTGAAACA TATATGTAAG TGCTCATTCG GCTTATCGAT CAAAGCAAAA
TAGTTATTAA TAGTGTGATA AAACATATTC ACGTACGTAG ATTTTGTATA ATTTTTTTTT ATTCATTAAT AACTAAAATT
ATTTGATATC CTAGAATTAG AAAAGTGAAA ATGTATCAGC TCCTTTCTAC TTCTGAGCAA AAGCCTATAT TCAATCGCAA
AGAGTGGACT GTGATGCTAC GTGTGTCAAT CTGGATCCTT AACCTTTTAA G

>Vigan.05G089500.01
ATGGAAGAGG AAAGAGGGAG TTTCCTGCCG AACAACAAAG ATGAGCTACT ACCACTTGAT AGAACAACAG AATTGAAGAA
CTTCAGATCA TACCTGAGAT GGGTTTACGT GGATCATTCC AACGTGTGCA AAGCTGGTTT CTCTTGGTCC GTGTTCTTCA
CCTTGGCCTT TGTTGTGCCC ATACTTTCAC ACTTTTTGCT TGATTGCCCC ACCTGCGATC AAGATCATAC TCGACCGTAC
CACATACCAG TGCAGATTTC TCTCTCCATC TTTGCAGCCC TCTCTTTCAT CAGTATTTCT TCCTGGGATC GTAAATATGG
CTTCAGCAAG TTTCTCTTCC TTGATAAATT AGGTGATGAA AGCCTCAAGA TTCAACGAGG GTACTCGGAA CAGATGCAGG
GAACCATGAA GCTCATCTTG AGGTGGGGGC TTCCCTGTTT CATAGCAGAA TTTGCCTACA AGATATGGTG GTACGTCTCA
GGAGTTTCAC AAATACCACA TTACGGTAAT ATATACGTGA GCAGCATCAT TCTGTGCACA TTTGAGCTAT GTTCCTGGCT
TTATAGAACC TCCATTTTCT TCCTGGTGTG TGTCCTCTTT CGACTTATCT GCTACTTGCA AATACTCAGA CTAGATGAGT
TTGCTCGAGT TTTTCATCGA GAAACTGAGG TGGGGTCAAT CTTGCTGGAG CACCTTAGAT TGAGAAGGAA TCTTCGGATC
ATAAGCCATC GTTTCCGAGT TTTCATTCTA TCTTCTCTGC TTTTGGTGAC AGCAAGCCAA CTCATTTTTC TGCTTATGGT
TACAAAAGCC CATGCAGATG TTGATATCAT GAAGTCTGGA GAACTTGCGT TAGTGTCGAT CACCCTGGTG AGTGGACTTT
TCTTACTCTT GCGAGGTGCA ACCAAGATCA CACATAAAGC ACACTCCGTT ACAGGCCTTG CAGCTAAGTG GCATATATGT
GCTACCATAA ATTCATTTGA CAACATTGAT GGAGAGACAC CAACAACTGC GCAAGCAATT TCAGCCCAAG CTATTGCTGC
CAATATTAGT TGGGGATCAT CGGATGATGA GGTGGGAGAT GAGGAGGACG AGTTGGATAA CACAAAATTG CTGCCAATTT
ACACCCAAAC AATCTCATTT CACAAGAGGC AGGCTCTAGT GACATACTTG GAGAACAATA GAGCAGGAAT CACAGTGTTT
GGGTTCATGC TTGACAGATC CTGGCTCCAC TCCATTTTTG GCATTCAAAT GGCTCTTTGC CTTTGGCTAC TTAACAAAAC
AATTGGTGTT TAG

>Vigan.05G089500.01
MEEERGSFLP NNKDELLPLD RTTELKNFRS YLRWVYVDHS NVCKAGFSWS VFFTLAFVVP ILSHFLLDCP TCDQDHTRPY
HIPVQISLSI FAALSFISIS SWDRKYGFSK FLFLDKLGDE SLKIQRGYSE QMQGTMKLIL RWGLPCFIAE FAYKIWWYVS
GVSQIPHYGN IYVSSIILCT FELCSWLYRT SIFFLVCVLF RLICYLQILR LDEFARVFHR ETEVGSILLE HLRLRRNLRI
ISHRFRVFIL SSLLLVTASQ LIFLLMVTKA HADVDIMKSG ELALVSITLV SGLFLLLRGA TKITHKAHSV TGLAAKWHIC
ATINSFDNID GETPTTAQAI SAQAIAANIS WGSSDDEVGD EEDELDNTKL LPIYTQTISF HKRQALVTYL ENNRAGITVF
GFMLDRSWLH SIFGIQMALC LWLLNKTIGV *