GBrowse Details

Vigan.05G028200.01

Basic Information:
Name: Vigan.05G028200.01
Multiple alignment
Variant Information
Position: Chr05:1830100..1832110 (+ strand)
Length: 2011
Functional Information:
Description: Similar to Nicotiana tabacum ORF. [G7IFB8, Medicago truncatula]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:45.30,40.49,39.91,35.94,50.38,64.34,9.48,22.06
Arabidopsis thaliana homolog: AT5G64510.1
Automatic updates:
Name: BT096650 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-21A5 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354920 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100791353 (LOC100791353), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:1830100..1830279 (+ strand)
Length: 180
Type: five_prime_UTR
Position: Chr05:1830280..1830609 (+ strand)
Length: 330
Type: CDS
Position: Chr05:1830707..1831045 (+ strand)
Length: 339
Type: CDS
Position: Chr05:1831138..1831950 (+ strand)
Length: 813
Type: CDS
Position: Chr05:1831951..1832110 (+ strand)
Length: 160
Type: three_prime_UTR

>Vigan.05G028200.01 class=Sequence position=Chr05:1830100..1832110 (+ strand)
TCGTGGTGTA GTTGGTTATC ACGTCAGTCT AACACACTGA AGGTCTCCGG TTCGAGTCCG GGCGACGCCA TTTGTTTCTG
TTTTGATTTT AGCAAATCGA ACAATCTTGG AAAACGTCGT CGTTTTAACT TTGAATTTCG TTCGCATAAA AGCCGCGTGA
TTTGGGGGAA GCTACGGCTA ATGGAAAAGA TGTACGAAAA TATATCCGCC ACATTTCGAC CTCTTCGCCC TCCACGAATA
GCAACCAATC ACATATCTCC AATAATAAGT TTCTCCATCC TTATTGGTCC ACGTCATCAG CCCAGAACCT TCTTTCCGAA
AACAAACAAC TGTATATATA CCAATGCTTT CGTCATTCTT TCTCCCAAAC CCACACGAGA AAACACTTTC ATCATCATCG
AACGAATAAT TTCGAATCGC ACCATGAAAT CGCTTCTCCT CTTCGGAATC GCTGTCCTGC TCTTTCATTC ATGCCTTGCC
TCTGAAATCC CCTACCCCAA GGCCATTTCG GTATGTCCCA TTGATTCAAT CCTCTTTTCT TTTTCTTTAT ATAAATGGTG
TTATTGTAGG TTCTGAATCT AATGTTTCGC ATTTGTGGTT TGCGCAGGAT TTGAAGGATT CAATTATGAA AGGATTTGGG
ATTACGGCGG AGGATGAGGT GAAGATTACG GGGTTCGATC CTCGAGAAGC TGAAGTTGGG CATTCCGTGG AGTACCGATT
CGACTTAGAA ATCGATCATC AGGTCATTCC CTTCAAACTT CTCGAAGACG TCAAACGTTG GGATTACGTG GATCTTCCCA
TTTTCCAGTC CCAGGACCAG GCCCATACAG GCTTGGTCCC GAAACGGGCC TCGGATAACA GGCTTCCCGT TCTGGCTCCC
TTCGTCCTTG CCGGGCCCAT GGAACTCTGG ATTCACGACG CCAATGACAT GAGACTCTCT CTTCCCGTAA GCCCTAATTT
CAACTCAACC TTTTTTTTCA TTGATATATG ATTGTAATTT GTAATGGTGA ATTGATAAAA CGTGATTTGG CTGTGTAGCA
TGACGTGGAT GCTGGTGTGT TGAAGAAAGT GATTTTGGCG GAGGGAGCGG CGGTTACCGT TAAAGGTGCA AGATCCGTTA
GTCTCCGTCA ACCGCTTGAA TTTCCTCTTC CGTTAAACCG GACGGAGAAT GGTTTCGCCA ACGGTCTTTT GGCTCTCGCT
GGACATCTTC GCCATGCTTC TAGAACCCAG GCCTCTCCGA TTTTGTCGCT GAGAATTGTT GGTCCCACGT CGATCGCAGC
AGCGCCTTCC GACTCAACAA CATCAACCTC GTTGAAGCTT AAACGTCTTG CACCTGGTCT TGTGGAATTG TCTTCGCCCT
CGAAGACCAA AGAGGTTGAG CCATTTTCAA GCGTTGATCT CGAGGGTGAA GCGCCCACGA TTCTTACACC CACTCAGTTT
TCAACTTTGT GGCCACTTTC TTCGATCAAT GGGTCGAATG CGAACTTATT GGGGTTTGAG AAACTGTTAC ATTCTGTGTT
AGGGCATAAA GCTGACAAGA AAGGTTCTTT TAGATTGTTG AAGGCTGATG TTTCTGCTCA GACTTACGTG AAGATTGGTT
TCAAAGCTGA GAAGAAGGTG AATGAAGAGG ACTTGGAGGG TTACCCTGCG TGGAGAACAA AGCCTGAAAC TTTGACGACA
CATTTTGAGG TTCTGGCTAA GGTGGATGGC GAGAGAGTGG TGCCGGAGAA AGTTATGCAG TTGAAACCTG TTGTTCCAGT
GGATAATGTG GCGCCCAATT TGCTCGCTGG GAATGTGTCT ATGTCGAAGA TGCAAGACGT TCACCCTCCT CCCAACCCCT
TTAGCCTGTA ATTTTGGAAA GGAAAAGGGA TTGGTTGTTT TTGTATACTC TACTCAGTAA TTACAATAGA GAGAAAGATG
TAACGTCTTG CTTCACTTTT TTATTTTGGT ATACACAACA GTTAACACAT GTAAAATTGT ATAAAGAGAA ATTTGTTTTA
TTTTGGCAAC C

>Vigan.05G028200.01
TCGTGGTGTA GTTGGTTATC ACGTCAGTCT AACACACTGA AGGTCTCCGG TTCGAGTCCG GGCGACGCCA TTTGTTTCTG
TTTTGATTTT AGCAAATCGA ACAATCTTGG AAAACGTCGT CGTTTTAACT TTGAATTTCG TTCGCATAAA AGCCGCGTGA
TTTGGGGGAA GCTACGGCTA ATGGAAAAGA TGTACGAAAA TATATCCGCC ACATTTCGAC CTCTTCGCCC TCCACGAATA
GCAACCAATC ACATATCTCC AATAATAAGT TTCTCCATCC TTATTGGTCC ACGTCATCAG CCCAGAACCT TCTTTCCGAA
AACAAACAAC TGTATATATA CCAATGCTTT CGTCATTCTT TCTCCCAAAC CCACACGAGA AAACACTTTC ATCATCATCG
AACGAATAAT TTCGAATCGC ACCATGAAAT CGCTTCTCCT CTTCGGAATC GCTGTCCTGC TCTTTCATTC ATGCCTTGCC
TCTGAAATCC CCTACCCCAA GGCCATTTCG GATTTGAAGG ATTCAATTAT GAAAGGATTT GGGATTACGG CGGAGGATGA
GGTGAAGATT ACGGGGTTCG ATCCTCGAGA AGCTGAAGTT GGGCATTCCG TGGAGTACCG ATTCGACTTA GAAATCGATC
ATCAGGTCAT TCCCTTCAAA CTTCTCGAAG ACGTCAAACG TTGGGATTAC GTGGATCTTC CCATTTTCCA GTCCCAGGAC
CAGGCCCATA CAGGCTTGGT CCCGAAACGG GCCTCGGATA ACAGGCTTCC CGTTCTGGCT CCCTTCGTCC TTGCCGGGCC
CATGGAACTC TGGATTCACG ACGCCAATGA CATGAGACTC TCTCTTCCCC ATGACGTGGA TGCTGGTGTG TTGAAGAAAG
TGATTTTGGC GGAGGGAGCG GCGGTTACCG TTAAAGGTGC AAGATCCGTT AGTCTCCGTC AACCGCTTGA ATTTCCTCTT
CCGTTAAACC GGACGGAGAA TGGTTTCGCC AACGGTCTTT TGGCTCTCGC TGGACATCTT CGCCATGCTT CTAGAACCCA
GGCCTCTCCG ATTTTGTCGC TGAGAATTGT TGGTCCCACG TCGATCGCAG CAGCGCCTTC CGACTCAACA ACATCAACCT
CGTTGAAGCT TAAACGTCTT GCACCTGGTC TTGTGGAATT GTCTTCGCCC TCGAAGACCA AAGAGGTTGA GCCATTTTCA
AGCGTTGATC TCGAGGGTGA AGCGCCCACG ATTCTTACAC CCACTCAGTT TTCAACTTTG TGGCCACTTT CTTCGATCAA
TGGGTCGAAT GCGAACTTAT TGGGGTTTGA GAAACTGTTA CATTCTGTGT TAGGGCATAA AGCTGACAAG AAAGGTTCTT
TTAGATTGTT GAAGGCTGAT GTTTCTGCTC AGACTTACGT GAAGATTGGT TTCAAAGCTG AGAAGAAGGT GAATGAAGAG
GACTTGGAGG GTTACCCTGC GTGGAGAACA AAGCCTGAAA CTTTGACGAC ACATTTTGAG GTTCTGGCTA AGGTGGATGG
CGAGAGAGTG GTGCCGGAGA AAGTTATGCA GTTGAAACCT GTTGTTCCAG TGGATAATGT GGCGCCCAAT TTGCTCGCTG
GGAATGTGTC TATGTCGAAG ATGCAAGACG TTCACCCTCC TCCCAACCCC TTTAGCCTGT AATTTTGGAA AGGAAAAGGG
ATTGGTTGTT TTTGTATACT CTACTCAGTA ATTACAATAG AGAGAAAGAT GTAACGTCTT GCTTCACTTT TTTATTTTGG
TATACACAAC AGTTAACACA TGTAAAATTG TATAAAGAGA AATTTGTTTT ATTTTGGCAA CC

>Vigan.05G028200.01
ATGGAAAAGA TGTACGAAAA TATATCCGCC ACATTTCGAC CTCTTCGCCC TCCACGAATA GCAACCAATC ACATATCTCC
AATAATAAGT TTCTCCATCC TTATTGGTCC ACGTCATCAG CCCAGAACCT TCTTTCCGAA AACAAACAAC TGTATATATA
CCAATGCTTT CGTCATTCTT TCTCCCAAAC CCACACGAGA AAACACTTTC ATCATCATCG AACGAATAAT TTCGAATCGC
ACCATGAAAT CGCTTCTCCT CTTCGGAATC GCTGTCCTGC TCTTTCATTC ATGCCTTGCC TCTGAAATCC CCTACCCCAA
GGCCATTTCG GATTTGAAGG ATTCAATTAT GAAAGGATTT GGGATTACGG CGGAGGATGA GGTGAAGATT ACGGGGTTCG
ATCCTCGAGA AGCTGAAGTT GGGCATTCCG TGGAGTACCG ATTCGACTTA GAAATCGATC ATCAGGTCAT TCCCTTCAAA
CTTCTCGAAG ACGTCAAACG TTGGGATTAC GTGGATCTTC CCATTTTCCA GTCCCAGGAC CAGGCCCATA CAGGCTTGGT
CCCGAAACGG GCCTCGGATA ACAGGCTTCC CGTTCTGGCT CCCTTCGTCC TTGCCGGGCC CATGGAACTC TGGATTCACG
ACGCCAATGA CATGAGACTC TCTCTTCCCC ATGACGTGGA TGCTGGTGTG TTGAAGAAAG TGATTTTGGC GGAGGGAGCG
GCGGTTACCG TTAAAGGTGC AAGATCCGTT AGTCTCCGTC AACCGCTTGA ATTTCCTCTT CCGTTAAACC GGACGGAGAA
TGGTTTCGCC AACGGTCTTT TGGCTCTCGC TGGACATCTT CGCCATGCTT CTAGAACCCA GGCCTCTCCG ATTTTGTCGC
TGAGAATTGT TGGTCCCACG TCGATCGCAG CAGCGCCTTC CGACTCAACA ACATCAACCT CGTTGAAGCT TAAACGTCTT
GCACCTGGTC TTGTGGAATT GTCTTCGCCC TCGAAGACCA AAGAGGTTGA GCCATTTTCA AGCGTTGATC TCGAGGGTGA
AGCGCCCACG ATTCTTACAC CCACTCAGTT TTCAACTTTG TGGCCACTTT CTTCGATCAA TGGGTCGAAT GCGAACTTAT
TGGGGTTTGA GAAACTGTTA CATTCTGTGT TAGGGCATAA AGCTGACAAG AAAGGTTCTT TTAGATTGTT GAAGGCTGAT
GTTTCTGCTC AGACTTACGT GAAGATTGGT TTCAAAGCTG AGAAGAAGGT GAATGAAGAG GACTTGGAGG GTTACCCTGC
GTGGAGAACA AAGCCTGAAA CTTTGACGAC ACATTTTGAG GTTCTGGCTA AGGTGGATGG CGAGAGAGTG GTGCCGGAGA
AAGTTATGCA GTTGAAACCT GTTGTTCCAG TGGATAATGT GGCGCCCAAT TTGCTCGCTG GGAATGTGTC TATGTCGAAG
ATGCAAGACG TTCACCCTCC TCCCAACCCC TTTAGCCTGT AA

>Vigan.05G028200.01
MEKMYENISA TFRPLRPPRI ATNHISPIIS FSILIGPRHQ PRTFFPKTNN CIYTNAFVIL SPKPTRENTF IIIERIISNR
TMKSLLLFGI AVLLFHSCLA SEIPYPKAIS DLKDSIMKGF GITAEDEVKI TGFDPREAEV GHSVEYRFDL EIDHQVIPFK
LLEDVKRWDY VDLPIFQSQD QAHTGLVPKR ASDNRLPVLA PFVLAGPMEL WIHDANDMRL SLPHDVDAGV LKKVILAEGA
AVTVKGARSV SLRQPLEFPL PLNRTENGFA NGLLALAGHL RHASRTQASP ILSLRIVGPT SIAAAPSDST TSTSLKLKRL
APGLVELSSP SKTKEVEPFS SVDLEGEAPT ILTPTQFSTL WPLSSINGSN ANLLGFEKLL HSVLGHKADK KGSFRLLKAD
VSAQTYVKIG FKAEKKVNEE DLEGYPAWRT KPETLTTHFE VLAKVDGERV VPEKVMQLKP VVPVDNVAPN LLAGNVSMSK
MQDVHPPPNP FSL*