GBrowse Details

Vigan.05G022800.01

Basic Information:
Name: Vigan.05G022800.01
Multiple alignment
Variant Information
Position: Chr05:1439980..1444199 (+ strand)
Length: 4220
Functional Information:
Description: Similar to Uncharacterized protein. [G7IPM1, Medicago truncatula]
InterPro: Ubiquinol-cytochrome c chaperone, CBP3 (IPR007129)
Ubiquinol-cytochrome c chaperone/UPF0174 (IPR021150)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.98,9.01,8.01,10.44,15.44,9.31,47.90,8.73
Arabidopsis thaliana homolog: AT5G51220.1
Structure :
Position: Chr05:1439980..1440138 (+ strand)
Length: 159
Type: five_prime_UTR
Position: Chr05:1440139..1440285 (+ strand)
Length: 147
Type: CDS
Position: Chr05:1440399..1440612 (+ strand)
Length: 214
Type: CDS
Position: Chr05:1441584..1441750 (+ strand)
Length: 167
Type: CDS
Position: Chr05:1441968..1442092 (+ strand)
Length: 125
Type: CDS
Position: Chr05:1442265..1442325 (+ strand)
Length: 61
Type: CDS
Position: Chr05:1442922..1442970 (+ strand)
Length: 49
Type: CDS
Position: Chr05:1443737..1443816 (+ strand)
Length: 80
Type: CDS
Position: Chr05:1443817..1444199 (+ strand)
Length: 383
Type: three_prime_UTR

>Vigan.05G022800.01 class=Sequence position=Chr05:1439980..1444199 (+ strand)
CTGATTTTGG TCTGTGTCCA GAGGTTTCAA ATTTAATCCT TTTCTATTTA TTTATTTTCA GTCGTTCTTC TTTCTCTTGC
GTTGCGTATC AATGTGTTGT TATCTGGGTT GTCCTGCATA ACACAATCTA TTAAGCTTTG ATTTCGATTC ATAACCAGAA
TGTTACGAAG GTGGAGCAAA GTAGTTTCTC CAATCTCCAA ATTTGGATCG CAGAGCCATC TTAATTTCGT CAAGAATGTC
ACGCGCCAAA GCTACGCTGG GGTTGCACCC GCGCCCACGA TAGAGGACAA ACCTCAATCC CCTGCGGTAT GCAAACTTCA
CTTTCTTTCG CTCTTCAACC ATAACTCAAA TTTGCAGAAT TAAAATGGAA ATGAACTGCT ACTGATTTGA TGCTGCTAAC
CAGAATTTCT ACTTAGCAGG TTAACCCACA CAAAATGTTT TGGTCTAAAC CCTGTTCTCT GGCCCTGCCC CCTGACTCAT
CCCTCAGAGT TGAAGAACCT AATTATCAGG GCATCAAGCG TTTCTTGCTC AAACTCATGA TGTTTTATAG TAAGCAGAGC
AGGTCAATTC GAGGGGCTAA TGTTGTGTAC CATAGAATCA TTTCACAAGT TGATAAACCT CCCATTTATG AAGGTCCGTT
GTCCTCGTAG CAATAATATT AGCCGTAGCT GTAGCTCAGA TGCATGTATG CTCTTATGTT TATTCACTCA CGCAATTATG
CTCCTATACC CATTTTAAAC TGCGGTAGTT GTTGAAGACA CCTAAAAGAG CTTGATGTTG GGGCTAAAAT CACAGTCGCA
TACCCTATTT TGAAACTTTA ATCTCACTAA TTTAGTCTTT TGGGCTGCTT TGGGGTTATA AATTGACAGT CAATGATTTT
CTCACAACAC AGAGGAGTTA TGCATCTCTG GTAGTTTGGT ATTTGTAGCC ATTTTTTGTG ATATTCTGCT TATTTGCTAT
CAGTGGAAGC TCTTGGTTTC CCTCCTACAT TTTTAAATAC CTGCTGACTT GTACTTGGTA GAATATGAAT ATAAGATTTA
ATGGATTTGT GTATGGAATT TTAATGATAG ATTCATCCTC CGCATGGCTA ATATGACAAA GCTGTTGATA TCATTCCACT
CTATTCTTTT TTTATTCATG TTTGTATTAG GTTCTCTGGT GATGAATATA CACCTGAGTT AAAAACCGTG TCGTTTGAGT
GTTTGTGGTT TGTAGTACTT TGTTTTATAA GGTTTCTTTT TCTTGTTGTT CTTTTAGAGA GTTTATTTTC GGATGATAGA
AATCTTAACA AACTAAAGAC CACATTTTGG CCATTTTATG ACTGATAAAA ATGTCATTTC CCCCTGTTGA CATTTGTTTA
TGCTTTTGAA GTTCCCACCA TTTAAAGAAA GGCAACTGTG TCATGCTTGT TTGGGAAAGT TTATCTTTTT TGGTGCTAGT
GTGTCTTCGG TGATTTGGTA TATATGTGCT TAGAAAAATT AGTTGTTTGC AATCATAATC GTGTAATCAT GGCATGGAAG
GAATTTGATT TGTATTAGTG TAAAGTTTTG TTAAAACTAG TGTAAACTCT CTTGATATTC TAAACAACTT CTATTCGCTT
GCAGTTTTTA ACTTGGAGAA AACTTTCAAA ACAACGTTCT CTTTACTTGT ACTTCATATG TGGTTATGTT TGCGTCGCTT
GAAGCAAGAG GGAAATGAGG GTGTTGAATT TGGGCAATAC CTTTATGAGA TTTACAATCA TGATGTGGAG CTAAGAGTGT
CCAAAGCTGG AGTAAGTAGT CATTTATTTA TGAGTTGATA TATTTTTGGG AACAATGTAC ACTGAAAATT TTCCTTAACA
TTTCCGTTTA GAATATTTAG TAGCTATTGT TTGACATCAT TATTCCTCGG TATTTTGCCT TAAATTCCTT TTTTTGCAAT
TTATCCAAAG TAGTCTGGGG ACTTGACTCT GTATTGGTGA CTTATGATCG TTCAATTTGA AATGGCAGGT TAACCTACTA
CTGACTAAGT GGATGAAAGA GCTCGAGAAG ATATTTTATG GGAACATTGT TGCCTATGAT ACTGCAATAC TTCCAGAAGC
TAAACCGGGT GATTTCTCCA ATGTTATATG GAGGTTGGTA ATAATCTGAA TGTAATCCTC TTCCTGTTGA AAGTAGGAAA
CTTTAGATCA ATGCTTCGCT TCTCTCAGTT TTTGATATTG AATCAGTGAA GACTCAGTTC TCATACCTAG TACTTCCTTT
ATATTCGTAG TCTATCCTCA TCTGTGTTTT TTTTGGGGAT TTCAGGAATA TATTCTCTGA AGATGGGTCT TCAACAGAAG
ACGATGCTGC ATCTCAATCA GTGCAGGTAT GCCTATATAT GTAGCATTTT TCATTATATT TGCAGAAAAA TAGTGTGAAT
TTTCTAACAT ACGCTTCTAA GATTGGACTA TTGCTTGGTA TTTCAATCTA TAAGCCAAGA TGTTGAACCC TGGGGCAACT
GTTTAATCAA GCCATACAAC TTGTTAATGT TAACCAATCA CCAATGAAGT TACTTCTTAA CCTGCTGTCA TTCACCAGTT
GCCTCCACTC TGGGTTAATA TTTTGGCATG GCTTGACTTT TCAAGAATTC ATTCTTTTAT TGTTGACCAA TTTTTTTGAC
ACATTACCGT TATGCTGGAG TTTCTTTTTT TAAACTTGGC AAGCTTAGTG ATCACTTTTA ATGAAGTAGA GACTACTAGA
TGAGTGGCTT TCTTTCCTGA ATTCGTATTA ACTGCCACTT TACTACCCAG AAATGTTTCC AAAGTAAATT TTTCATTCTA
GTTATCATGA ATTTTTCATT CTTTCCCTTG CCCTTCATAT TTTAACTGAA TGCCAGATGC TTAAATTGTA TCCTCAGTGC
GTTCTTATCT TCCTTTTTTA TATTAAATAT ACATACACAA TTATACTGAA CTATTGTTTT AGGCGCTCGC CAGGTATGCT
CGCCGGGAAG AAAGTTGCAT GACTTTAACA GGTAAAACAC TGTTCGTTTT CTCTTTGTCT GTAAGAAATG TCTGTATATG
TTTATATTAT AATTATTATT GATCATGAAG TGGACGACTT AAACAGGTAA ACACCGTCTG TTTTGTCCTT GTCTGTAAGA
ATTGTTTGTA GATGTAATTA TGCGTTATAT TATTATTGAC CATGAAGTGG ATGAAAATGA CGAGCGAATG CCTGCTGCTT
TTATACTTGG TGATAAAGTG AGCTGAAGAG CTCCCCATCA CACCACTAGG GTCTCATTTG AAACCTGTTA AAAAGGATTT
CGAGGCCATA GAAAAACAAG GAAGTATTAT CTGCAAGGAA CCTAGCCTTA ATTTGGTGGA ATATTCTGAT CAATATGGCT
AGTTTTTACA TGCTTAATGT GTTTTTTCTG CAATTGATAG AGATATGCAT CTTTATATTT CTGGACTTCC TGCTACACTT
CTACCTTACG AACTGCAATC TTTCTTTTAA CTCAATAATC GTTAACATTA TTTATTATTT CACTGGTGTC ATGCAGTTTG
AAAAATACAT AGTTTTCACC AAGTCATTAA ATATTTACAT AATGCTCTCT GCATTTTACT TCTGTCCTCC CAAAGAAACA
TTAAAAAAGT TATTTTGAAC TCAGATACTC CATGCACATT AGTTGTTTCA CTGGCAGGAA ACTTTAAAAG ATATGTCAAT
GAAAGAATTC TAGCAGATCT TATGCAAATA TTGTTTTCTG TTTTTTCTTT TAATTTTGAG TTTTATTGAA TTGGCAGATA
AAGAAGCACT ATTTTCAGGG AATTTCATGT TCACCTCATT GAAACATGAG AACGGAAGAG GAAAGAGGCC TCAATGATTA
GTGACGATTT CTAAATTGTG ATTGGGTGAT TGAAAATACA CGCTGTTATT TTTTTACCTT TCTTAACAAA AAGTGTTGAA
TAATTATGAC AAAAGGCTTG TGTCCTTCTC CGTAAGTCTT TATACCTGAT TAGCTTGGTG TCTAGATACT AGATTTTTTT
CATATTCTTT GCTCTGTAAA ACAAGAAAAG AAAGAGGTGG GCGTGATTAA AAAGTGTCAC TCTTTCTTTT TAAGGTCCTC
TGTTCTTTAC AGCGTCTTAG CTGCTATTAA CCAGTTGCCT TCGAAACTGA GTTTATATGA CAGTAATTAA TGATATCTAT
AATTTCTGTT TGTGATAAGC TCATGAAAAT GTTCTCAAGC AATTTGCCAT TTATCACAAA 

>Vigan.05G022800.01
CTGATTTTGG TCTGTGTCCA GAGGTTTCAA ATTTAATCCT TTTCTATTTA TTTATTTTCA GTCGTTCTTC TTTCTCTTGC
GTTGCGTATC AATGTGTTGT TATCTGGGTT GTCCTGCATA ACACAATCTA TTAAGCTTTG ATTTCGATTC ATAACCAGAA
TGTTACGAAG GTGGAGCAAA GTAGTTTCTC CAATCTCCAA ATTTGGATCG CAGAGCCATC TTAATTTCGT CAAGAATGTC
ACGCGCCAAA GCTACGCTGG GGTTGCACCC GCGCCCACGA TAGAGGACAA ACCTCAATCC CCTGCGGTTA ACCCACACAA
AATGTTTTGG TCTAAACCCT GTTCTCTGGC CCTGCCCCCT GACTCATCCC TCAGAGTTGA AGAACCTAAT TATCAGGGCA
TCAAGCGTTT CTTGCTCAAA CTCATGATGT TTTATAGTAA GCAGAGCAGG TCAATTCGAG GGGCTAATGT TGTGTACCAT
AGAATCATTT CACAAGTTGA TAAACCTCCC ATTTATGAAG TTTTTAACTT GGAGAAAACT TTCAAAACAA CGTTCTCTTT
ACTTGTACTT CATATGTGGT TATGTTTGCG TCGCTTGAAG CAAGAGGGAA ATGAGGGTGT TGAATTTGGG CAATACCTTT
ATGAGATTTA CAATCATGAT GTGGAGCTAA GAGTGTCCAA AGCTGGAGTT AACCTACTAC TGACTAAGTG GATGAAAGAG
CTCGAGAAGA TATTTTATGG GAACATTGTT GCCTATGATA CTGCAATACT TCCAGAAGCT AAACCGGGTG ATTTCTCCAA
TGTTATATGG AGGAATATAT TCTCTGAAGA TGGGTCTTCA ACAGAAGACG ATGCTGCATC TCAATCAGTG CAGGCGCTCG
CCAGGTATGC TCGCCGGGAA GAAAGTTGCA TGACTTTAAC AGATAAAGAA GCACTATTTT CAGGGAATTT CATGTTCACC
TCATTGAAAC ATGAGAACGG AAGAGGAAAG AGGCCTCAAT GATTAGTGAC GATTTCTAAA TTGTGATTGG GTGATTGAAA
ATACACGCTG TTATTTTTTT ACCTTTCTTA ACAAAAAGTG TTGAATAATT ATGACAAAAG GCTTGTGTCC TTCTCCGTAA
GTCTTTATAC CTGATTAGCT TGGTGTCTAG ATACTAGATT TTTTTCATAT TCTTTGCTCT GTAAAACAAG AAAAGAAAGA
GGTGGGCGTG ATTAAAAAGT GTCACTCTTT CTTTTTAAGG TCCTCTGTTC TTTACAGCGT CTTAGCTGCT ATTAACCAGT
TGCCTTCGAA ACTGAGTTTA TATGACAGTA ATTAATGATA TCTATAATTT CTGTTTGTGA TAAGCTCATG AAAATGTTCT
CAAGCAATTT GCCATTTATC ACAAA

>Vigan.05G022800.01
ATGTTACGAA GGTGGAGCAA AGTAGTTTCT CCAATCTCCA AATTTGGATC GCAGAGCCAT CTTAATTTCG TCAAGAATGT
CACGCGCCAA AGCTACGCTG GGGTTGCACC CGCGCCCACG ATAGAGGACA AACCTCAATC CCCTGCGGTT AACCCACACA
AAATGTTTTG GTCTAAACCC TGTTCTCTGG CCCTGCCCCC TGACTCATCC CTCAGAGTTG AAGAACCTAA TTATCAGGGC
ATCAAGCGTT TCTTGCTCAA ACTCATGATG TTTTATAGTA AGCAGAGCAG GTCAATTCGA GGGGCTAATG TTGTGTACCA
TAGAATCATT TCACAAGTTG ATAAACCTCC CATTTATGAA GTTTTTAACT TGGAGAAAAC TTTCAAAACA ACGTTCTCTT
TACTTGTACT TCATATGTGG TTATGTTTGC GTCGCTTGAA GCAAGAGGGA AATGAGGGTG TTGAATTTGG GCAATACCTT
TATGAGATTT ACAATCATGA TGTGGAGCTA AGAGTGTCCA AAGCTGGAGT TAACCTACTA CTGACTAAGT GGATGAAAGA
GCTCGAGAAG ATATTTTATG GGAACATTGT TGCCTATGAT ACTGCAATAC TTCCAGAAGC TAAACCGGGT GATTTCTCCA
ATGTTATATG GAGGAATATA TTCTCTGAAG ATGGGTCTTC AACAGAAGAC GATGCTGCAT CTCAATCAGT GCAGGCGCTC
GCCAGGTATG CTCGCCGGGA AGAAAGTTGC ATGACTTTAA CAGATAAAGA AGCACTATTT TCAGGGAATT TCATGTTCAC
CTCATTGAAA CATGAGAACG GAAGAGGAAA GAGGCCTCAA TGA

>Vigan.05G022800.01
MLRRWSKVVS PISKFGSQSH LNFVKNVTRQ SYAGVAPAPT IEDKPQSPAV NPHKMFWSKP CSLALPPDSS LRVEEPNYQG
IKRFLLKLMM FYSKQSRSIR GANVVYHRII SQVDKPPIYE VFNLEKTFKT TFSLLVLHMW LCLRRLKQEG NEGVEFGQYL
YEIYNHDVEL RVSKAGVNLL LTKWMKELEK IFYGNIVAYD TAILPEAKPG DFSNVIWRNI FSEDGSSTED DAASQSVQAL
ARYARREESC MTLTDKEALF SGNFMFTSLK HENGRGKRPQ *