GBrowse Details

Vigan.04G423900.01

Basic Information:
Name: Vigan.04G423900.01
Multiple alignment
Variant Information
Position: Chr04:53191943..53194935 (- strand)
Length: 2993
Functional Information:
Description: Similar to Short-chain dehydrogenase/reductase. [U5TZJ9, Phaseolus vulgaris]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:59.48,104.15,56.49,19.87,42.78,76.22,38.31,22.48
Arabidopsis thaliana homolog: AT1G67730.1
Automatic updates:
Name: NM_001254581 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max estradiol 17-beta-dehydrogenase 12-like (LOC100817128), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:53191943..53192242 (- strand)
Length: 300
Type: three_prime_UTR
Position: Chr04:53192243..53192497 (- strand)
Length: 255
Type: CDS
Position: Chr04:53193553..53193622 (- strand)
Length: 70
Type: CDS
Position: Chr04:53193717..53194354 (- strand)
Length: 638
Type: CDS
Position: Chr04:53194355..53194935 (- strand)
Length: 581
Type: five_prime_UTR

>Vigan.04G423900.01 class=Sequence position=Chr04:53191943..53194935 (- strand)
GTTTTTCTGC TCTACCAGAA TATGAACCTT TCAATGGTTT TATCAGCTCC CAGTTTTACA CCACCCACTG CACTTCCAAC
CAAACAAACC CAAAACCAAA CATGTCCACC CACAACTTCA ACAATAAAAC GGGCCTCACC CATTTATTTT TTGTTAATTG
TCTAACACTG TCAATTTAGT TCATGAAAAA TAAAAAATAA ATTTGAAAAC TTTTTAGGTT TCACGATTTA CCCATAATAA
AAAAATGTAT TTTTTCAATT GGCGATATTC ATATCCAATG TTCTATTGAA AAATGAGGTA TAGATTTATG AAACAACCGA
TTCGTCACAT TTTATGGTGT GCAAAACAAT TTTGGGGTTT GAATATTCAA TGAATGTCAC CGTACTGCGC CAACTTTCTA
CTTAATTCTG GTGGTTTTCC GCTCATCTAC CGCACCCACA CTTGCCTCTC ACCACCTGTC TTTCACTCAC CGTCATCATC
ATAATAAATT CAATGCTCTT ATTGTTCTCA TCATAAACCC AAAAGCTTCT CCTGAGCCAT ACCATCATCT TTCTCATCAT
TCACACCATC AAATTCCTAA AATGGAATGT TGTATAATCT CCAGGCTACG GGTTCAACCC CTATGGTTCG CGCTGCTCTT
TCTTGTTGGA CTATTGACGA TTCTGAAACT AGCGTTCGTT GTTGTCAGAT GGGTCTACGT CAATTTCCTC AGACCTCCCA
AAAATCTTAG AAAGTACGGA TCTTGGGCTG TCGTGACTGG ACCCACTGAC GGCATTGGAA AAAGCTTCGC TTTTGAGCTC
GCGCGCAGAG GCCTCAACCT CGTACTCGTC GGTCGGAACC CCGAGAAGCT CAAAGACGTG TCGGATTCGA TCGCCGCCAA
GTTCGGGAAA ACCGAGGTCA AGACCGTGGT GGTCGATTTC TCGGGGGATC TGGACGAGGG TGTGGCCAAG ATTGGGGAAG
CGATTGAGGG GTTGGACGTT GGAGTGCTGG TTAACAATGT GGGAGTTTCG TACCCTTACG CCAGGTTCTT CCATGAAGTG
GACGAGGGGC TTCTCAACAA CCTTATCAAG GTTAACGTTA TCGGAACCAC CAAGGTCACG CAGGCTGTTC TGCCGGGGAT
GCTGAAGAGA AAGAGAGGAG CGATTGTTAA CATTGGTTCT GGTGCCGCTA TTGTGATTCC TTCCGATCCC CTTTATGCTG
TTTATGCCGC CACCAAAGCG TGAGTTCTCG TTGTTCATTG TTCTTGATTT TTGCATTCGC TCTTCATAGT ATTTGTTGGT
TGTTGAGGTT ATGTTTTGGG TTCATTGTTT CAGGTACATC GATCAGTTTT CCAGAAGTCT CTATGTTGAA TACAAGAAGA
GTGGAATTGA CGTTCAGTGC CAGGTATCGT GCTGTTTTTT AGTGTTCAAT TGTTCATGTT AGCTTCTTGC TTGCTTAGTT
TTTTTTTCTC TTTTGTTGAG GTGAACAATT TTCTCATTTT TGTTTAATTC CCCTTATCGA GTTTCTGCCA ATTAGTTTAT
TTATTGATGT GTGTTCGAGC TGAACTGCTC TGGTTTCAAA TCTTTTAAAC TGTGGTCATG GTAATGGATG TAGTTTTGTT
TTGTTGTAAT TCTTAATATA AAGGCATGGT ATTGCGGTTG AAATTTCCTC TTAATGCAGC CGATTCAGTC ACAGCTCTGG
TCTTGGTGCA GCTGAAATTG CTATTGTGAA ACAGTTTTTT GTGAAAATTT TGGATATCCA ATTGGTATGG CCATGGGAGA
CACAAAAGTC TTACCTTTTT TTTCTTAAAA AAATGACCAT TTCAATTGGA GCTAGTTGGA GTTATACGGT GATGAAAAGA
AAGCATAAGC GTTGCTGAGG AACAAATCCT CAAGTTATAA CTATTTTTTT CACTTACATA AACCTTGGAC AAAAGTGAAC
GGAAATGAGT CCCCTTTATA CCCTTTTCTT AGTTGAGGCA AGTATGGTTA TAAATTGCTG AAAGTTGAAG ATATGTCAGG
ACACTGTTTA ATACTGATTA TTGTGTGCAA CCTGTTCCTG ATAAAAACTC TAGTACGTGC GGTTGTATCT GCTTGTAGTT
TTCTTCAACC ATCTGAATAT AGTAGCAATT TCGAAAACTT CTTTTTCTTT TACTTTTAAA GTTTTGCTTT AATGTTACGT
GTGTGGTATG CATACCAACC TTGTCTGATC AATCTTTTGT TTTATTGTTT ATGAAAATGT AGAGCAATAC ATGATAGCAT
CTTTTGAGCT AATGTGGCTT CAATCATTGA CCATTAGCCT AAATCTCATA GTGCACTTTA ATATTCTTCA CGGCCTTTGC
TACTACCCTT TCCCTTACTC CATCTTACAT TCTTCTTGTA TATTTGTGTG AAAGAGTGTC CATGTGTTTG CAATGAATGA
TCTTTATCAT TTTTCTGATT GAGATTTTCC TGGTGCAGGT TCCTTTATAT GTGGCAACCA AGATGGCATC AATAAGGAGA
TCTTCATTCT TTGTTCCATC AACAGATGGC TATGCCAAAG CTGGTGTGCG ATGGATAGGT TACGAACCTC GATGCACGCC
ATATTGGCCA CATACCCTTC TCTGGGCGGT TGCATGCTCA TTGCCTGAAT TTGTTGTTGA TGCTTGGCGA CTGTGGTTCT
GCTTGGGTAT TCGAAAGAGG GGGCAACGCA AAGAGTCCAC CAAGAAGGAA TAGATATACA GAAGAATGCC TGGTTCTGTT
CTTTAGGCAA TATAAATGCT ACTCATCTCA CACATATTCA GATTGTTAGC AGATTAAGGA TTCCCAAGTA TCTGATATGT
TTCTAAATTT CATCTTAATG TTGTTTAGTA TCAGTTGTGT GGTCTAAAAA TTCTTTTTAC TCCCCTCTTT TGGCTGTTTC
TGTTCACTGT TTCAGTACTT TGTTGAACTG ATATGATGTG TATTGGCATA TCGCTTAACC CGGTTTTCTA TGTTGTCATT
CCTTGCTTTT CTCTTACTGT GAACTTTTAG AAA

>Vigan.04G423900.01
GTTTTTCTGC TCTACCAGAA TATGAACCTT TCAATGGTTT TATCAGCTCC CAGTTTTACA CCACCCACTG CACTTCCAAC
CAAACAAACC CAAAACCAAA CATGTCCACC CACAACTTCA ACAATAAAAC GGGCCTCACC CATTTATTTT TTGTTAATTG
TCTAACACTG TCAATTTAGT TCATGAAAAA TAAAAAATAA ATTTGAAAAC TTTTTAGGTT TCACGATTTA CCCATAATAA
AAAAATGTAT TTTTTCAATT GGCGATATTC ATATCCAATG TTCTATTGAA AAATGAGGTA TAGATTTATG AAACAACCGA
TTCGTCACAT TTTATGGTGT GCAAAACAAT TTTGGGGTTT GAATATTCAA TGAATGTCAC CGTACTGCGC CAACTTTCTA
CTTAATTCTG GTGGTTTTCC GCTCATCTAC CGCACCCACA CTTGCCTCTC ACCACCTGTC TTTCACTCAC CGTCATCATC
ATAATAAATT CAATGCTCTT ATTGTTCTCA TCATAAACCC AAAAGCTTCT CCTGAGCCAT ACCATCATCT TTCTCATCAT
TCACACCATC AAATTCCTAA AATGGAATGT TGTATAATCT CCAGGCTACG GGTTCAACCC CTATGGTTCG CGCTGCTCTT
TCTTGTTGGA CTATTGACGA TTCTGAAACT AGCGTTCGTT GTTGTCAGAT GGGTCTACGT CAATTTCCTC AGACCTCCCA
AAAATCTTAG AAAGTACGGA TCTTGGGCTG TCGTGACTGG ACCCACTGAC GGCATTGGAA AAAGCTTCGC TTTTGAGCTC
GCGCGCAGAG GCCTCAACCT CGTACTCGTC GGTCGGAACC CCGAGAAGCT CAAAGACGTG TCGGATTCGA TCGCCGCCAA
GTTCGGGAAA ACCGAGGTCA AGACCGTGGT GGTCGATTTC TCGGGGGATC TGGACGAGGG TGTGGCCAAG ATTGGGGAAG
CGATTGAGGG GTTGGACGTT GGAGTGCTGG TTAACAATGT GGGAGTTTCG TACCCTTACG CCAGGTTCTT CCATGAAGTG
GACGAGGGGC TTCTCAACAA CCTTATCAAG GTTAACGTTA TCGGAACCAC CAAGGTCACG CAGGCTGTTC TGCCGGGGAT
GCTGAAGAGA AAGAGAGGAG CGATTGTTAA CATTGGTTCT GGTGCCGCTA TTGTGATTCC TTCCGATCCC CTTTATGCTG
TTTATGCCGC CACCAAAGCG TACATCGATC AGTTTTCCAG AAGTCTCTAT GTTGAATACA AGAAGAGTGG AATTGACGTT
CAGTGCCAGG TTCCTTTATA TGTGGCAACC AAGATGGCAT CAATAAGGAG ATCTTCATTC TTTGTTCCAT CAACAGATGG
CTATGCCAAA GCTGGTGTGC GATGGATAGG TTACGAACCT CGATGCACGC CATATTGGCC ACATACCCTT CTCTGGGCGG
TTGCATGCTC ATTGCCTGAA TTTGTTGTTG ATGCTTGGCG ACTGTGGTTC TGCTTGGGTA TTCGAAAGAG GGGGCAACGC
AAAGAGTCCA CCAAGAAGGA ATAGATATAC AGAAGAATGC CTGGTTCTGT TCTTTAGGCA ATATAAATGC TACTCATCTC
ACACATATTC AGATTGTTAG CAGATTAAGG ATTCCCAAGT ATCTGATATG TTTCTAAATT TCATCTTAAT GTTGTTTAGT
ATCAGTTGTG TGGTCTAAAA ATTCTTTTTA CTCCCCTCTT TTGGCTGTTT CTGTTCACTG TTTCAGTACT TTGTTGAACT
GATATGATGT GTATTGGCAT ATCGCTTAAC CCGGTTTTCT ATGTTGTCAT TCCTTGCTTT TCTCTTACTG TGAACTTTTA
GAAA

>Vigan.04G423900.01
ATGGAATGTT GTATAATCTC CAGGCTACGG GTTCAACCCC TATGGTTCGC GCTGCTCTTT CTTGTTGGAC TATTGACGAT
TCTGAAACTA GCGTTCGTTG TTGTCAGATG GGTCTACGTC AATTTCCTCA GACCTCCCAA AAATCTTAGA AAGTACGGAT
CTTGGGCTGT CGTGACTGGA CCCACTGACG GCATTGGAAA AAGCTTCGCT TTTGAGCTCG CGCGCAGAGG CCTCAACCTC
GTACTCGTCG GTCGGAACCC CGAGAAGCTC AAAGACGTGT CGGATTCGAT CGCCGCCAAG TTCGGGAAAA CCGAGGTCAA
GACCGTGGTG GTCGATTTCT CGGGGGATCT GGACGAGGGT GTGGCCAAGA TTGGGGAAGC GATTGAGGGG TTGGACGTTG
GAGTGCTGGT TAACAATGTG GGAGTTTCGT ACCCTTACGC CAGGTTCTTC CATGAAGTGG ACGAGGGGCT TCTCAACAAC
CTTATCAAGG TTAACGTTAT CGGAACCACC AAGGTCACGC AGGCTGTTCT GCCGGGGATG CTGAAGAGAA AGAGAGGAGC
GATTGTTAAC ATTGGTTCTG GTGCCGCTAT TGTGATTCCT TCCGATCCCC TTTATGCTGT TTATGCCGCC ACCAAAGCGT
ACATCGATCA GTTTTCCAGA AGTCTCTATG TTGAATACAA GAAGAGTGGA ATTGACGTTC AGTGCCAGGT TCCTTTATAT
GTGGCAACCA AGATGGCATC AATAAGGAGA TCTTCATTCT TTGTTCCATC AACAGATGGC TATGCCAAAG CTGGTGTGCG
ATGGATAGGT TACGAACCTC GATGCACGCC ATATTGGCCA CATACCCTTC TCTGGGCGGT TGCATGCTCA TTGCCTGAAT
TTGTTGTTGA TGCTTGGCGA CTGTGGTTCT GCTTGGGTAT TCGAAAGAGG GGGCAACGCA AAGAGTCCAC CAAGAAGGAA
TAG

>Vigan.04G423900.01
MECCIISRLR VQPLWFALLF LVGLLTILKL AFVVVRWVYV NFLRPPKNLR KYGSWAVVTG PTDGIGKSFA FELARRGLNL
VLVGRNPEKL KDVSDSIAAK FGKTEVKTVV VDFSGDLDEG VAKIGEAIEG LDVGVLVNNV GVSYPYARFF HEVDEGLLNN
LIKVNVIGTT KVTQAVLPGM LKRKRGAIVN IGSGAAIVIP SDPLYAVYAA TKAYIDQFSR SLYVEYKKSG IDVQCQVPLY
VATKMASIRR SSFFVPSTDG YAKAGVRWIG YEPRCTPYWP HTLLWAVACS LPEFVVDAWR LWFCLGIRKR GQRKESTKKE
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