GBrowse Details

Vigan.04G405600.01

Basic Information:
Name: Vigan.04G405600.01
Multiple alignment
Variant Information
Position: Chr04:51683745..51685330 (- strand)
Length: 1586
Functional Information:
Description: Similar to Plasma membrane intrinsic protein 1;3. [Q0MRN2, Phaseolus vulgaris]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Major intrinsic protein (IPR000425)
Major intrinsic protein, conserved site (IPR022357)
Aquaporin-like (IPR023271)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.07,0.99,288.06,1046.45,56.45,193.04,14.50,536.91
Automatic updates:
Name: MK133345 NCBI(nuccore)
Organism: Arachis hypogaea
Description: Arachis hypogaea strain Zhongkaihua 10 plasma membrane intrinsic protein 1 (PIP1) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:51683745..51684076 (- strand)
Length: 332
Type: three_prime_UTR
Position: Chr04:51684077..51684169 (- strand)
Length: 93
Type: CDS
Position: Chr04:51684288..51684428 (- strand)
Length: 141
Type: CDS
Position: Chr04:51684538..51684836 (- strand)
Length: 299
Type: CDS
Position: Chr04:51684942..51685278 (- strand)
Length: 337
Type: CDS
Position: Chr04:51685279..51685330 (- strand)
Length: 52
Type: five_prime_UTR

>Vigan.04G405600.01 class=Sequence position=Chr04:51683745..51685330 (- strand)
ATCATCATCA TCACCACAAC CACAAGTTGG AGAAAGATAG AGTGAGCAAA AAATGGAGGG AAAGGAGCAA GATGTTTCAT
TGGGAGCGAA CAAATTCTCA GAGAGGCAAC CCATCGGGAC TGCGGCTCAG AGCCAAGACG ATGGAAAGGA CTACCAAGAG
CCTCCGTCGG CTCCACTATT CGAACCCTCC GAACTCGCTT CTTGGTCCTT CTACAGAGCC GGAATAGCCG AGTTTGTGGC
TACTTTTCTT TTCCTCTACA TAACTATCTT AACCGTCATG GGTGTCAATA GGTCCGATTC CAAGTGCGCA ACCGTTGGCA
TTCAAGGCAT TGCTTGGGCC TTCGGTGGTA TGATCTTCGC TCTCGTTTAC TGCACCGCTG GAATCTCAGG TAAAAACACT
TCCTCTCTTC CTTATACATA TATGCTGTTA TAATTATATA TATACATTAA TTAATAATAA TCGCTGTGGT TTGTGTTGGT
GTGTGATGAT GCAGGGGGAC ACATAAACCC GGCTGTGACA TTCGGACTCT TCTTGGCGAG GAAATTGTCG TTGACTAGGG
CACTGTTCTA CATGGTGATG CAGGTTCTGG GTGCTATCGT TGGTGCTGGT GTGGTCAAAG GTTTCGAAGG AAAAACCTTC
TTCGGGAAAC ACAACGGTGG TGCCAACTTC GTTGCCTCTG GTTACACCAA AGGTGATGGA CTCGGTGCTG AGATTGTTGG
TACCTTCGTT CTCGTCTACA CTGTTTTCTC AGCCACTGAC GCCAAGCGTA ACGCTAGAGA CTCACACGTT CCTGTGTGTA
CCCTACTTTT ATTATTCATG AAAAAAATAT ATTAATTCAT AAATATTTTA CCACAAAACA AGAAATACAC TTGTTAATAT
ATAATGTTGG TGGAATGATC AGATTTTGGC ACCCTTGCCC ATTGGATTCG CTGTGTTCTT GGTGCACTTG GCCACCATCC
CAATCACTGG CACCGGTATC AACCCTGCTC GAAGTCTCGG TGCTGCCATC ATTTTCAACA AAGATCTTGG CTGGGATGAT
CACGTATGTT ATATTTCTCT TTAAATTTTG AAATATATTA TTATCAAATT TTGGAATTTA CAGGAAGTTA GTGAGGTAAT
GCATTCTTCT AATTAACCCT TTCGCATTTT TTGTTGCACA GTGGATTTTC TGGGTTGGAC CCTTCGTTGG AGCTGCTCTT
GCGGCTCTGT ACCACCAAGT CGTAATCAGA GCCATTCCCT TCAAATCCAA TTAATGCGAT AAAAGTTTGT GATCGCTGGG
TCAAAAGACC CAAAGCAAAG CAAAGTTTGT GGTCTACTTT TATTTTATCT GTTATTTTCC TTTTTACTGT TGTTAAGCCT
TGTCCTTTGT AAAGAATGTG ATGTTATAAT GAGTAGGGGT GGATGTGTTG GGTGATTGGT CACTTTTCCT CTACTTTTAA
GTTGGAAGAT GACCATGAGA GATGTGTGCT GTAATTGCTT ATCAAATAAA AAGCAACTTC TTTTCCTTGA GAATGTTTTG
TCCCTCTTAG TTTGGCATCT TTCAATGAGT ATATGCTCAA ATTTCATAGT GCTACGGCTT GAATTA

>Vigan.04G405600.01
ATCATCATCA TCACCACAAC CACAAGTTGG AGAAAGATAG AGTGAGCAAA AAATGGAGGG AAAGGAGCAA GATGTTTCAT
TGGGAGCGAA CAAATTCTCA GAGAGGCAAC CCATCGGGAC TGCGGCTCAG AGCCAAGACG ATGGAAAGGA CTACCAAGAG
CCTCCGTCGG CTCCACTATT CGAACCCTCC GAACTCGCTT CTTGGTCCTT CTACAGAGCC GGAATAGCCG AGTTTGTGGC
TACTTTTCTT TTCCTCTACA TAACTATCTT AACCGTCATG GGTGTCAATA GGTCCGATTC CAAGTGCGCA ACCGTTGGCA
TTCAAGGCAT TGCTTGGGCC TTCGGTGGTA TGATCTTCGC TCTCGTTTAC TGCACCGCTG GAATCTCAGG GGGACACATA
AACCCGGCTG TGACATTCGG ACTCTTCTTG GCGAGGAAAT TGTCGTTGAC TAGGGCACTG TTCTACATGG TGATGCAGGT
TCTGGGTGCT ATCGTTGGTG CTGGTGTGGT CAAAGGTTTC GAAGGAAAAA CCTTCTTCGG GAAACACAAC GGTGGTGCCA
ACTTCGTTGC CTCTGGTTAC ACCAAAGGTG ATGGACTCGG TGCTGAGATT GTTGGTACCT TCGTTCTCGT CTACACTGTT
TTCTCAGCCA CTGACGCCAA GCGTAACGCT AGAGACTCAC ACGTTCCTAT TTTGGCACCC TTGCCCATTG GATTCGCTGT
GTTCTTGGTG CACTTGGCCA CCATCCCAAT CACTGGCACC GGTATCAACC CTGCTCGAAG TCTCGGTGCT GCCATCATTT
TCAACAAAGA TCTTGGCTGG GATGATCACT GGATTTTCTG GGTTGGACCC TTCGTTGGAG CTGCTCTTGC GGCTCTGTAC
CACCAAGTCG TAATCAGAGC CATTCCCTTC AAATCCAATT AATGCGATAA AAGTTTGTGA TCGCTGGGTC AAAAGACCCA
AAGCAAAGCA AAGTTTGTGG TCTACTTTTA TTTTATCTGT TATTTTCCTT TTTACTGTTG TTAAGCCTTG TCCTTTGTAA
AGAATGTGAT GTTATAATGA GTAGGGGTGG ATGTGTTGGG TGATTGGTCA CTTTTCCTCT ACTTTTAAGT TGGAAGATGA
CCATGAGAGA TGTGTGCTGT AATTGCTTAT CAAATAAAAA GCAACTTCTT TTCCTTGAGA ATGTTTTGTC CCTCTTAGTT
TGGCATCTTT CAATGAGTAT ATGCTCAAAT TTCATAGTGC TACGGCTTGA ATTA

>Vigan.04G405600.01
ATGGAGGGAA AGGAGCAAGA TGTTTCATTG GGAGCGAACA AATTCTCAGA GAGGCAACCC ATCGGGACTG CGGCTCAGAG
CCAAGACGAT GGAAAGGACT ACCAAGAGCC TCCGTCGGCT CCACTATTCG AACCCTCCGA ACTCGCTTCT TGGTCCTTCT
ACAGAGCCGG AATAGCCGAG TTTGTGGCTA CTTTTCTTTT CCTCTACATA ACTATCTTAA CCGTCATGGG TGTCAATAGG
TCCGATTCCA AGTGCGCAAC CGTTGGCATT CAAGGCATTG CTTGGGCCTT CGGTGGTATG ATCTTCGCTC TCGTTTACTG
CACCGCTGGA ATCTCAGGGG GACACATAAA CCCGGCTGTG ACATTCGGAC TCTTCTTGGC GAGGAAATTG TCGTTGACTA
GGGCACTGTT CTACATGGTG ATGCAGGTTC TGGGTGCTAT CGTTGGTGCT GGTGTGGTCA AAGGTTTCGA AGGAAAAACC
TTCTTCGGGA AACACAACGG TGGTGCCAAC TTCGTTGCCT CTGGTTACAC CAAAGGTGAT GGACTCGGTG CTGAGATTGT
TGGTACCTTC GTTCTCGTCT ACACTGTTTT CTCAGCCACT GACGCCAAGC GTAACGCTAG AGACTCACAC GTTCCTATTT
TGGCACCCTT GCCCATTGGA TTCGCTGTGT TCTTGGTGCA CTTGGCCACC ATCCCAATCA CTGGCACCGG TATCAACCCT
GCTCGAAGTC TCGGTGCTGC CATCATTTTC AACAAAGATC TTGGCTGGGA TGATCACTGG ATTTTCTGGG TTGGACCCTT
CGTTGGAGCT GCTCTTGCGG CTCTGTACCA CCAAGTCGTA ATCAGAGCCA TTCCCTTCAA ATCCAATTAA 

>Vigan.04G405600.01
MEGKEQDVSL GANKFSERQP IGTAAQSQDD GKDYQEPPSA PLFEPSELAS WSFYRAGIAE FVATFLFLYI TILTVMGVNR
SDSKCATVGI QGIAWAFGGM IFALVYCTAG ISGGHINPAV TFGLFLARKL SLTRALFYMV MQVLGAIVGA GVVKGFEGKT
FFGKHNGGAN FVASGYTKGD GLGAEIVGTF VLVYTVFSAT DAKRNARDSH VPILAPLPIG FAVFLVHLAT IPITGTGINP
ARSLGAAIIF NKDLGWDDHW IFWVGPFVGA ALAALYHQVV IRAIPFKSN*