GBrowse Details

Vigan.04G398400.01

Basic Information:
Name: Vigan.04G398400.01
Multiple alignment
Variant Information
Position: Chr04:51100754..51104020 (- strand)
Length: 3267
Functional Information:
Description: Similar to OTU-like cysteine protease. [E9NZU0, Phaseolus vulgaris]
InterPro: Ovarian tumour, otubain (IPR003323)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:27.19,12.73,10.75,15.81,14.30,22.37,20.02,13.16
Arabidopsis thaliana homolog: AT3G62940.2
Automatic updates:
Name: NM_001255262 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max OTU domain-containing protein 6B-like (LOC100780620), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:51100754..51101000 (- strand)
Length: 247
Type: three_prime_UTR
Position: Chr04:51101001..51101868 (- strand)
Length: 868
Type: CDS
Position: Chr04:51103010..51103116 (- strand)
Length: 107
Type: CDS
Position: Chr04:51103117..51104020 (- strand)
Length: 904
Type: five_prime_UTR

>Vigan.04G398400.01 class=Sequence position=Chr04:51100754..51104020 (- strand)
CTCCGCCGTA GGCGCTAGCT AGGTAAGCAT CTTCTCTTCC AACCCATTTC TCTTCCACTC CTGCACTCAA TAACTCTTTT
TTTTTTCATT ATTTTAATTA TTAATATTAT TACTGTTATC AACCCATGCC ACTCATAATT TTCGCTACAT TTTTTCTCAT
ATCAGTTAGC AAATTTACAC AGTACCCCCT AAATGTTTGC AAAGGCTGCC ATGAACTACC CTTTTTTCAA AATTTTATTG
AAGCTCTAAT CTTTTTCGAA GTGCGGATGT ATCTAAAGAA ACTATTGGGT TTAATTGCAT TTTTTAGTTA TAGTAGCCTT
GAATGTGAAA CTCAATTTTT CCTTTTTTTT TTTTTGGATT GGTCTTTGAG ATTGATTGTG ATTCATTAAT CGGATGTAGC
TCTGCTTCAA TCCAGGAATT GTAAAATTCT TTTGATTGAG GTGGATTTCT CCAAGAGTGG TCGCGCCATT TGTAGTTGGA
AATCCTGATT GTGTGTTCAC AGATTTTGTT TTTCGAGGAA GAAACTCCCT TACCCTTTAT TGTTATGAAG TTTGATTCAT
GAAAATCAGA AGTCTTGTAA TAAACAATTT TGGGTTGGTA TTTGGTGTCT AAACTCGTTT AAGGCTGTGG TAACAATGCA
TGCATTACTA TTTTAACTAA TTAACTCATA TCTACTTTGA GTTGTTAATA AATGATTTGT TTTTTAGTTT TGGAAATTGT
TGTTGCGGCT TAATAACTTG CACTGAAAGA TCCATGTTTG CATTAGGGTT TTCGAGATCT CATTGGTGTC ATTGTATATC
CTTGTTATTT TATTTCTAAC TAATGATTAT TGGCTTGGTT ATGATTTCTT ATCACTGTAA AATGTTTCTA CTTTTTTTTT
TTTTTTAATT TTAGGGCTGC TCCAATGGAG GATACCCAAG AAATTAAGGA GCAGGCTCAT GAAGAAGTGA TTTCAGACAA
AACATCTGAG ACGAAGCCGG AGACTCGTGA TGAAATTCTC TCCCGTCATA GGTGATTCAC TCTTCATAAG ATCAACATCT
TCAGCTCTCA CCTTTTTTGT GAATGTATTT AGTCTTAGTT GCTCTCTTAC TCAGAGATTG ACTCTAAAGC TCAACATAGA
TGGGTTTTAC TCATTCTGGA ATCTGAATTA CTCAGTCATT CCATATTATT CCTGTTCCTC TTCGCAAGAT AAAAGGAGTT
TTATCATGTC ATGGTATTCG AAATCAGTCA ACTTGAAGAA TTGCACGATT CTTCATCCCT GCCATGCCTG GGTGAGTTTG
TCCATGCTCA GAATTGCAAA CGAGCATGAT TAGTGGACTC ACCATGCAGG ACATGAGAAT TGTGACTGAC ATCACTGGCA
TGGCATTTCC CTTTTAGAAA ACGTTCCTTT GCATGTTTCT TAACCCTCAA CCCTAGAATA CCATACCTAT GAAAATGTAT
TTCTATAATA ACATTCAAGG TGTGCTTCGT TGATTTGGAG TTTACTGTGG TACTTTGTCT CTGTTCTGAG CCAATGCTTA
GAGATTTCCC AAGTTACTTG TGTTACCATT TTATACTGAC TGAACTATTT GAAACATCTT CCAATGTTAC TTTAGTGCAA
AATGCTAAAA AAGGTTTATC TTTTATATAA CATAAAAGAA AACAAAGTGG TCAAAAGTTT TAATCAGGTT CTTTAGAGTT
TCAAGTAGTT CGAAGTTCTT TTTTTCCTTT TCTTTGGAGA CATAAATAAA AGAACAAGGG TCACTTCATT CACTCAGGTT
AGCATTTGGC TTCTCGAAAA CTTGTGTCAA TTGTCACTTT CCACTGGCGA AAGCTCGTGA AGTAAATAAA ATAGTTATTT
GGTTAAAGAC TTTATGGTGT ATTAGTTGAG AAAGTGCTTG AAATTGAAAC TAACGTATCT GCATGGCTAT ACTCAGTTTG
AATCACTACT GCTAGTTATA TTTGCTTTGC ATGGTTGAAA GCAGCTACTT TATAATGAAT GTCACACTTA AGTATGGTTT
GTTTTCCAAG TTCTTGAGTT ATTATTTTTC ATTTAATTCC TATTTATTAT TAATTCATGT TTCAATATAG CAACTTGAAT
CGTTTTACTT GTTGGGTTCT TTTGGGTTCT CGTGCAATGT GAATTCTTCC CTAATTACTT GCTTATTTTC AGGAAAGAGA
TATCACAGCT GCAGAAAAAG GAAGTTGAGA TGAAAAAGGC TGCAGCTAGA GGTAGCAAGG CTGAGCAGAA AGCTAAGAAG
AAGCAAGTGG AGGAAGAGGT TTCTCAACTT TCTACTAAGC TGAAGGAGAA TCATGCCATG GAATTGGCTG CATTAGGCTA
TAGCAGCGGT AATGGGAATG AAAACAGCAA TTTGGACACT TTGGTTAAGG CCATTGCTGG AGTATCTGTT GCTAGTCAAC
CTGAACATAC AAAAGTCAGC AAGGCCAAAC AGAGGCGAGA CAAAAGAGCT CAACAAGAAG CAGAAAGGGA ACAGAGAATC
CAAGCAGAGC AGACTGACAT TGTAAGCGAT CGAATGATTG AAAACGAGAA GTTGGAAAGG AAGTTGAAGC CTCTAGGTTT
GACTGTTTGT GAAATAAAGC CTGATGGGCA CTGCCTCTAT AGAGCTGTTG AAGATCAGCT GGCTGTCCTC TCTGGTGGTA
CATCACTTTA TACATACCAA GAACTTCGGG AAATGGTGGC TGCTTACATG AGAAAGCATA CATCTGATTT CCTTCCATTT
TTCCTGTCAG AGAATTTAAT TGAGGATGAT TCTAATGAAT CACTTGCTGA GAAGTTTGAA AATTACTGTA AAGAAGTGGA
GTCCACAGCT ATATGGGGAG GGCAACTAGA GCTTGGTGCC TTGACTCACT GCTTGAAGAA GCATATTATG ATATTTTCAG
GATCCTTCCC CGATGTGGAG ATGGGCAAAG AGTATAAATC TGATGGTGGC ACTGGCTTGT CTAATTCGAG TATCATGCTT
TCTTATCATA AGCATGCTTT TGGGCTAGGA GAGCATTATA ATTCTGTGGT CCCAACATGA TCAAATGGGG CATATAATAT
AATCATACGG ATGCTTGTTT ATCATGTTGC CTTGTATCAT TTTTCTTTAC AGTCAGGCAT TTGGCTTTAG GTCTCTTGAA
ACCCTAGTTG TGATTTTGAA ATGGCTATAA CTGTACATTT CACAACTGTA ATTCATATTT TCTGGACGAT TATTTATGTT
GATGATCATG TAAATGATCT GCGGCATCTA CTTAATTTTG AGCGTTTTAG TAACATTTTC AGGTGTT

>Vigan.04G398400.01
CTCCGCCGTA GGCGCTAGCT AGGTAAGCAT CTTCTCTTCC AACCCATTTC TCTTCCACTC CTGCACTCAA TAACTCTTTT
TTTTTTCATT ATTTTAATTA TTAATATTAT TACTGTTATC AACCCATGCC ACTCATAATT TTCGCTACAT TTTTTCTCAT
ATCAGTTAGC AAATTTACAC AGTACCCCCT AAATGTTTGC AAAGGCTGCC ATGAACTACC CTTTTTTCAA AATTTTATTG
AAGCTCTAAT CTTTTTCGAA GTGCGGATGT ATCTAAAGAA ACTATTGGGT TTAATTGCAT TTTTTAGTTA TAGTAGCCTT
GAATGTGAAA CTCAATTTTT CCTTTTTTTT TTTTTGGATT GGTCTTTGAG ATTGATTGTG ATTCATTAAT CGGATGTAGC
TCTGCTTCAA TCCAGGAATT GTAAAATTCT TTTGATTGAG GTGGATTTCT CCAAGAGTGG TCGCGCCATT TGTAGTTGGA
AATCCTGATT GTGTGTTCAC AGATTTTGTT TTTCGAGGAA GAAACTCCCT TACCCTTTAT TGTTATGAAG TTTGATTCAT
GAAAATCAGA AGTCTTGTAA TAAACAATTT TGGGTTGGTA TTTGGTGTCT AAACTCGTTT AAGGCTGTGG TAACAATGCA
TGCATTACTA TTTTAACTAA TTAACTCATA TCTACTTTGA GTTGTTAATA AATGATTTGT TTTTTAGTTT TGGAAATTGT
TGTTGCGGCT TAATAACTTG CACTGAAAGA TCCATGTTTG CATTAGGGTT TTCGAGATCT CATTGGTGTC ATTGTATATC
CTTGTTATTT TATTTCTAAC TAATGATTAT TGGCTTGGTT ATGATTTCTT ATCACTGTAA AATGTTTCTA CTTTTTTTTT
TTTTTTAATT TTAGGGCTGC TCCAATGGAG GATACCCAAG AAATTAAGGA GCAGGCTCAT GAAGAAGTGA TTTCAGACAA
AACATCTGAG ACGAAGCCGG AGACTCGTGA TGAAATTCTC TCCCGTCATA GGAAAGAGAT ATCACAGCTG CAGAAAAAGG
AAGTTGAGAT GAAAAAGGCT GCAGCTAGAG GTAGCAAGGC TGAGCAGAAA GCTAAGAAGA AGCAAGTGGA GGAAGAGGTT
TCTCAACTTT CTACTAAGCT GAAGGAGAAT CATGCCATGG AATTGGCTGC ATTAGGCTAT AGCAGCGGTA ATGGGAATGA
AAACAGCAAT TTGGACACTT TGGTTAAGGC CATTGCTGGA GTATCTGTTG CTAGTCAACC TGAACATACA AAAGTCAGCA
AGGCCAAACA GAGGCGAGAC AAAAGAGCTC AACAAGAAGC AGAAAGGGAA CAGAGAATCC AAGCAGAGCA GACTGACATT
GTAAGCGATC GAATGATTGA AAACGAGAAG TTGGAAAGGA AGTTGAAGCC TCTAGGTTTG ACTGTTTGTG AAATAAAGCC
TGATGGGCAC TGCCTCTATA GAGCTGTTGA AGATCAGCTG GCTGTCCTCT CTGGTGGTAC ATCACTTTAT ACATACCAAG
AACTTCGGGA AATGGTGGCT GCTTACATGA GAAAGCATAC ATCTGATTTC CTTCCATTTT TCCTGTCAGA GAATTTAATT
GAGGATGATT CTAATGAATC ACTTGCTGAG AAGTTTGAAA ATTACTGTAA AGAAGTGGAG TCCACAGCTA TATGGGGAGG
GCAACTAGAG CTTGGTGCCT TGACTCACTG CTTGAAGAAG CATATTATGA TATTTTCAGG ATCCTTCCCC GATGTGGAGA
TGGGCAAAGA GTATAAATCT GATGGTGGCA CTGGCTTGTC TAATTCGAGT ATCATGCTTT CTTATCATAA GCATGCTTTT
GGGCTAGGAG AGCATTATAA TTCTGTGGTC CCAACATGAT CAAATGGGGC ATATAATATA ATCATACGGA TGCTTGTTTA
TCATGTTGCC TTGTATCATT TTTCTTTACA GTCAGGCATT TGGCTTTAGG TCTCTTGAAA CCCTAGTTGT GATTTTGAAA
TGGCTATAAC TGTACATTTC ACAACTGTAA TTCATATTTT CTGGACGATT ATTTATGTTG ATGATCATGT AAATGATCTG
CGGCATCTAC TTAATTTTGA GCGTTTTAGT AACATTTTCA GGTGTT

>Vigan.04G398400.01
ATGGAGGATA CCCAAGAAAT TAAGGAGCAG GCTCATGAAG AAGTGATTTC AGACAAAACA TCTGAGACGA AGCCGGAGAC
TCGTGATGAA ATTCTCTCCC GTCATAGGAA AGAGATATCA CAGCTGCAGA AAAAGGAAGT TGAGATGAAA AAGGCTGCAG
CTAGAGGTAG CAAGGCTGAG CAGAAAGCTA AGAAGAAGCA AGTGGAGGAA GAGGTTTCTC AACTTTCTAC TAAGCTGAAG
GAGAATCATG CCATGGAATT GGCTGCATTA GGCTATAGCA GCGGTAATGG GAATGAAAAC AGCAATTTGG ACACTTTGGT
TAAGGCCATT GCTGGAGTAT CTGTTGCTAG TCAACCTGAA CATACAAAAG TCAGCAAGGC CAAACAGAGG CGAGACAAAA
GAGCTCAACA AGAAGCAGAA AGGGAACAGA GAATCCAAGC AGAGCAGACT GACATTGTAA GCGATCGAAT GATTGAAAAC
GAGAAGTTGG AAAGGAAGTT GAAGCCTCTA GGTTTGACTG TTTGTGAAAT AAAGCCTGAT GGGCACTGCC TCTATAGAGC
TGTTGAAGAT CAGCTGGCTG TCCTCTCTGG TGGTACATCA CTTTATACAT ACCAAGAACT TCGGGAAATG GTGGCTGCTT
ACATGAGAAA GCATACATCT GATTTCCTTC CATTTTTCCT GTCAGAGAAT TTAATTGAGG ATGATTCTAA TGAATCACTT
GCTGAGAAGT TTGAAAATTA CTGTAAAGAA GTGGAGTCCA CAGCTATATG GGGAGGGCAA CTAGAGCTTG GTGCCTTGAC
TCACTGCTTG AAGAAGCATA TTATGATATT TTCAGGATCC TTCCCCGATG TGGAGATGGG CAAAGAGTAT AAATCTGATG
GTGGCACTGG CTTGTCTAAT TCGAGTATCA TGCTTTCTTA TCATAAGCAT GCTTTTGGGC TAGGAGAGCA TTATAATTCT
GTGGTCCCAA CATGA

>Vigan.04G398400.01
MEDTQEIKEQ AHEEVISDKT SETKPETRDE ILSRHRKEIS QLQKKEVEMK KAAARGSKAE QKAKKKQVEE EVSQLSTKLK
ENHAMELAAL GYSSGNGNEN SNLDTLVKAI AGVSVASQPE HTKVSKAKQR RDKRAQQEAE REQRIQAEQT DIVSDRMIEN
EKLERKLKPL GLTVCEIKPD GHCLYRAVED QLAVLSGGTS LYTYQELREM VAAYMRKHTS DFLPFFLSEN LIEDDSNESL
AEKFENYCKE VESTAIWGGQ LELGALTHCL KKHIMIFSGS FPDVEMGKEY KSDGGTGLSN SSIMLSYHKH AFGLGEHYNS
VVPT*