GBrowse Details

Vigan.04G361100.01

Basic Information:
Name: Vigan.04G361100.01
Multiple alignment
Variant Information
Position: Chr04:48125595..48127547 (- strand)
Length: 1953
Functional Information:
Description: Similar to Uncharacterized protein. [I1MZ99, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Short-chain dehydrogenase/reductase, conserved site (IPR020904)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.17,0.05,2.70,0.03,56.92,0.00,1.29,1.12
Automatic updates:
Name: BT092472 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-11C17 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:48125595..48125739 (- strand)
Length: 145
Type: three_prime_UTR
Position: Chr04:48125740..48125934 (- strand)
Length: 195
Type: CDS
Position: Chr04:48126202..48126308 (- strand)
Length: 107
Type: CDS
Position: Chr04:48126411..48126627 (- strand)
Length: 217
Type: CDS
Position: Chr04:48126820..48127027 (- strand)
Length: 208
Type: CDS
Position: Chr04:48127137..48127231 (- strand)
Length: 95
Type: CDS
Position: Chr04:48127232..48127547 (- strand)
Length: 316
Type: five_prime_UTR

>Vigan.04G361100.01 class=Sequence position=Chr04:48125595..48127547 (- strand)
GTGCAAGTCA ATAAAATCCA ACACTAAACA GTTATAATAT TAAGATTACA GTATTCTAGG TGGGTGTCTT TTCCACAAAG
GTGGCTCTCA CTAATTGTGT TAGAAGCAGC CATGGTCCTG TTCTCTATCT GTATTGCAGT GCATCAAGTC AAAACAAGTT
TCTACTTAAA AAATCACTTT CAAAAGGTGC ATTTATTGTC TAGGCTATGT TCTTATTGAA TGTTTAACTA TATAATATAG
ATCACGGTGA ACATTAAGAA AATTTCAATT ATCAATCTCC AAACGCGCTT CTAGAGAAAA AAAAAACAGA AAAAAAATGA
CAGAGCCAGA AATCAGCAGA AGTAAGAGAG GAGGAAGATG GTCTCTCAGA GGAATGACGG CTCTTGTCAC CGGCGGCACT
CGCGGGATCG GGTTGGTTTT CATCTTTCTT TCTAGATCAT CTCAACATAC TTTCTCTTTT TGATTGTTCA TTTCACTTTG
TTTTGGTCTG ATGATTCATT TGTTTCAAAC TGTTTTTTAG ACACGCCATA GTGAGTGACT TGGCCACGTT TGGCGCGGCT
GTGCATACTT GTTCAAGGAC CCAAACGGAG CTCGACAAGT GCTTAGAAGA GTGGCAGAGT GAAGGCTTTC AGGTTACTGG
ATCGGTGTGT GACGTGTCCT CGCCTCCTCA GAGAGAGAAT CTTATTCAGG AAGTAGCATC CACCTTCAAT GGCAAGCTTA
ACATCTATGT CAGTTTGTTC TACTCATAAT GTTCATGCAT TTGATTATAT TGTATTTACA AGTCTTGTTA AGTAGAAAAG
AAAATGTATT AATGCACAGC CTCATGGTAG ATACAACAAT GAAGAAGGAA TTATACTGTT TATAGTTAGA TATGTTTTAT
TCATTAATCA TAAGTATGCA TGAGTTTTGT TTTATTTTAG GTAAACAACG TTGGAACAAA CTTTAGAAAG CCAACAATTG
AGTACAGTGC TGAAGAATAC TCACAGCTGA TGACAATTAA TTTAGACTCC TCATTCCATC TGTGCCAACT TGCATATCCT
CTTCTGAAAG AATCTGGAAA TGGAAGCATT GTGTTCATTT CATCTGTGGC TGGTGTGGTC AGCTTGGGTA CTGGAGCTGT
CTATGCAGCA AGCAAAGGTG AGTGTCATCA TCAGGTTTTT TCTTTCATGA ACATGTGATC GTTGAAATTT TATCACAAAG
AAATAAATAT ATTTACAATT TTGCTCTACT GAATTGCAGC TGCAATTAAT CAGCTTACAA AAGATCTGGC ATGTGAATGG
GCAAAAGACA ACATAAGGAG CAACTGTGTT GTACCGTGGG CTACTAGGAC TCCGCTTGTT GAACATGTAA TTTCTCTTGG
CTGTTTTCCT TTATATAATA AGTCTAATAT TAATATTGTA GAGTTGAATT TAGAAATAAG TTAACTTCTT ATATGGTACA
ATAAGATAAA ATTGATTTTA ATGAGATTTG TTGTTGCTAG GTCGCTTTTA TAGATTTGAG TCAGACATCA GTCTATTTCT
TAACCTAAAT AAATAGAATA CAAAATAGTG TTTATCTGTG TTACATGATG TGGTGAATTT GTTCTAACTT TTTTTATTTA
TTTTTTTTGG TAGTTGTTGA AAGATGAAAA GTTTGTGGAT GAAATAATGT CCCGTACACC AATCAAGCGT ATAGCAGAAG
CAGAAGAAGT GTCATCGTTG GTGACTTTCC TTTGCTTGCC AGCAGCTTCT TACATCACTG GACAGGTTAT CTGTGTTGAT
GGAGGATTAA CAGTGAATGG ATTTCAACCC ACCATGAGAA TTACCTGAAA TCACTATTTC GAATAAATGA TTCTCATTAC
AATAAGTGGA CTATAAATTA TGTGCAATTT GCTTTTCTCT CCTTTCTAGT TGCATAAGAA AATAAATTGT ATTCTGGTAA
ATGGGATTTT CTTTAAATAA CTTTAATGCC TTC

>Vigan.04G361100.01
GTGCAAGTCA ATAAAATCCA ACACTAAACA GTTATAATAT TAAGATTACA GTATTCTAGG TGGGTGTCTT TTCCACAAAG
GTGGCTCTCA CTAATTGTGT TAGAAGCAGC CATGGTCCTG TTCTCTATCT GTATTGCAGT GCATCAAGTC AAAACAAGTT
TCTACTTAAA AAATCACTTT CAAAAGGTGC ATTTATTGTC TAGGCTATGT TCTTATTGAA TGTTTAACTA TATAATATAG
ATCACGGTGA ACATTAAGAA AATTTCAATT ATCAATCTCC AAACGCGCTT CTAGAGAAAA AAAAAACAGA AAAAAAATGA
CAGAGCCAGA AATCAGCAGA AGTAAGAGAG GAGGAAGATG GTCTCTCAGA GGAATGACGG CTCTTGTCAC CGGCGGCACT
CGCGGGATCG GACACGCCAT AGTGAGTGAC TTGGCCACGT TTGGCGCGGC TGTGCATACT TGTTCAAGGA CCCAAACGGA
GCTCGACAAG TGCTTAGAAG AGTGGCAGAG TGAAGGCTTT CAGGTTACTG GATCGGTGTG TGACGTGTCC TCGCCTCCTC
AGAGAGAGAA TCTTATTCAG GAAGTAGCAT CCACCTTCAA TGGCAAGCTT AACATCTATG TAAACAACGT TGGAACAAAC
TTTAGAAAGC CAACAATTGA GTACAGTGCT GAAGAATACT CACAGCTGAT GACAATTAAT TTAGACTCCT CATTCCATCT
GTGCCAACTT GCATATCCTC TTCTGAAAGA ATCTGGAAAT GGAAGCATTG TGTTCATTTC ATCTGTGGCT GGTGTGGTCA
GCTTGGGTAC TGGAGCTGTC TATGCAGCAA GCAAAGCTGC AATTAATCAG CTTACAAAAG ATCTGGCATG TGAATGGGCA
AAAGACAACA TAAGGAGCAA CTGTGTTGTA CCGTGGGCTA CTAGGACTCC GCTTGTTGAA CATTTGTTGA AAGATGAAAA
GTTTGTGGAT GAAATAATGT CCCGTACACC AATCAAGCGT ATAGCAGAAG CAGAAGAAGT GTCATCGTTG GTGACTTTCC
TTTGCTTGCC AGCAGCTTCT TACATCACTG GACAGGTTAT CTGTGTTGAT GGAGGATTAA CAGTGAATGG ATTTCAACCC
ACCATGAGAA TTACCTGAAA TCACTATTTC GAATAAATGA TTCTCATTAC AATAAGTGGA CTATAAATTA TGTGCAATTT
GCTTTTCTCT CCTTTCTAGT TGCATAAGAA AATAAATTGT ATTCTGGTAA ATGGGATTTT CTTTAAATAA CTTTAATGCC
TTC

>Vigan.04G361100.01
ATGACAGAGC CAGAAATCAG CAGAAGTAAG AGAGGAGGAA GATGGTCTCT CAGAGGAATG ACGGCTCTTG TCACCGGCGG
CACTCGCGGG ATCGGACACG CCATAGTGAG TGACTTGGCC ACGTTTGGCG CGGCTGTGCA TACTTGTTCA AGGACCCAAA
CGGAGCTCGA CAAGTGCTTA GAAGAGTGGC AGAGTGAAGG CTTTCAGGTT ACTGGATCGG TGTGTGACGT GTCCTCGCCT
CCTCAGAGAG AGAATCTTAT TCAGGAAGTA GCATCCACCT TCAATGGCAA GCTTAACATC TATGTAAACA ACGTTGGAAC
AAACTTTAGA AAGCCAACAA TTGAGTACAG TGCTGAAGAA TACTCACAGC TGATGACAAT TAATTTAGAC TCCTCATTCC
ATCTGTGCCA ACTTGCATAT CCTCTTCTGA AAGAATCTGG AAATGGAAGC ATTGTGTTCA TTTCATCTGT GGCTGGTGTG
GTCAGCTTGG GTACTGGAGC TGTCTATGCA GCAAGCAAAG CTGCAATTAA TCAGCTTACA AAAGATCTGG CATGTGAATG
GGCAAAAGAC AACATAAGGA GCAACTGTGT TGTACCGTGG GCTACTAGGA CTCCGCTTGT TGAACATTTG TTGAAAGATG
AAAAGTTTGT GGATGAAATA ATGTCCCGTA CACCAATCAA GCGTATAGCA GAAGCAGAAG AAGTGTCATC GTTGGTGACT
TTCCTTTGCT TGCCAGCAGC TTCTTACATC ACTGGACAGG TTATCTGTGT TGATGGAGGA TTAACAGTGA ATGGATTTCA
ACCCACCATG AGAATTACCT GA

>Vigan.04G361100.01
MTEPEISRSK RGGRWSLRGM TALVTGGTRG IGHAIVSDLA TFGAAVHTCS RTQTELDKCL EEWQSEGFQV TGSVCDVSSP
PQRENLIQEV ASTFNGKLNI YVNNVGTNFR KPTIEYSAEE YSQLMTINLD SSFHLCQLAY PLLKESGNGS IVFISSVAGV
VSLGTGAVYA ASKAAINQLT KDLACEWAKD NIRSNCVVPW ATRTPLVEHL LKDEKFVDEI MSRTPIKRIA EAEEVSSLVT
FLCLPAASYI TGQVICVDGG LTVNGFQPTM RIT*