GBrowse Details

Vigan.04G348800.01

Basic Information:
Name: Vigan.04G348800.01
Multiple alignment
Variant Information
Position: Chr04:47069588..47072655 (- strand)
Length: 3068
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerase. [C6TF56, Glycine max]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
InterPro: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site (IPR020892)
Cyclophilin-type peptidyl-prolyl cis-trans isomerase (IPR024936)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:33.11,27.97,14.54,18.33,18.54,16.98,15.08,12.72
Arabidopsis thaliana homolog: AT2G36130.1
Automatic updates:
Name: NM_001250633 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500406 (LOC100500406), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255449 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase-like 1-like (LOC100786302), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:47069588..47069921 (- strand)
Length: 334
Type: three_prime_UTR
Position: Chr04:47069922..47069967 (- strand)
Length: 46
Type: CDS
Position: Chr04:47070262..47070346 (- strand)
Length: 85
Type: CDS
Position: Chr04:47071203..47071336 (- strand)
Length: 134
Type: CDS
Position: Chr04:47071620..47071681 (- strand)
Length: 62
Type: CDS
Position: Chr04:47071845..47071940 (- strand)
Length: 96
Type: CDS
Position: Chr04:47072068..47072139 (- strand)
Length: 72
Type: CDS
Position: Chr04:47072140..47072655 (- strand)
Length: 516
Type: five_prime_UTR

>Vigan.04G348800.01 class=Sequence position=Chr04:47069588..47072655 (- strand)
CCGATAGTGT GAGGCGTTCG CAAGCTCGAT TTGTCACAGG TCATTCTAAC AACGGACTCT AACTTTTTGT GAATCGAAAC
CGGAAGCCAT TGAAGCCACC GATTGATTCC TCCTCGAGGC CTCGTGACAC GCTGCAACCA AAAATCCAAC CCAATTCAAT
ATCTATATTC AAGACAAACG AAAAAAAAAG AATAAAGAAA AAAAAAACGC TCACGTATAT GGTGTGGCGG TTGGAGAAAC
CAAGAGCACG AACCAAACCA ATGCACTGAT TCTCAGCGCC AGCGAACCCG TTACCGATCA CAACAGCTCG CCGAATTGCA
CCGTCCAAAA TCTCCGGCAT TGTTTTTGCA TCAATTCAAA TGAGAGGGAA AAAGGGATTT TCTATTTCCC ACGTTCAAGT
TCTTTAAGTA GAATACGCGC CCGACCCGAC CCGACCCGAC CCAGTATAAA CGGGTTTAAA TTTTGTTCAT TTTATATGCG
GGAGAGTGAA AGGGGAGTGC TTGGTGTGTG AAGAAAATGT GGGCAAGCGC AGAAGGTGGT GCTCCGGAGG TTACTCTTGA
AACTTCCATG GGGTCCTTCA CAGTGGAGGT ACTTTCACTT TTTCTTTTTC CAATTTTCTC CCTCTATCTA TGTTCTTAGT
CTACGGTCCA AATTTTTCTT TTTTCTTTTT AAATAAAATT AAACGGTGTT ATCAATATTG TAAATTTGGG TTTAGCTGTA
CTACAAGCAT GCGCCCAGAA CTTGCAGGAA CTTCATTGAA CTGTCTCGCA GAGGTTACTA CGACAACGTT AAATTCCACA
GGATCATTAA GGTGATTATG TTCGGTTCTT TCTTGCCTTT GTGGGTGTCA AGCATCTGTT TGGATAAAAT ATTCTTACAT
TGGTTTGTGG TGTGGTTCGA TTTTATGCAT ATGGGTGCCA ACCCTCTGTT TGGGTGATGT ATTTTTACAT GGATTTGTGT
GGTTTGTTGA TTAGGACTTC ATAGTACAAG GTGGGGATCC TACTGGAACT GGAAGAGGAG GAGAATCCAT ATACGGGTAC
CTTGCTTAAG CTTTTGAGTC TTGATTGTTA TTAGGTTAAA CTATTCATTT AGTCCTGTTT AGGCAATTTT TTTGGGGAAG
CTTTATACTG CTGATGTATG TGACAGATGC TTAATTTTTG TGCATACGAC ATAGAATTTA AAATGGAGAC AGTTTTAGGG
ATCAATGAAC AGATTAACTT TATCATTGTT GTTGTTGATA AATGATGATG ATAGTGATGG TTTATGGCGT TTCTCTCGCT
CATGCTTTTA TTATACTCAT GGTATCATGT TAACAACAGT GCAAAGTTTG AAGATGAGAT AAAACGAGAG TTGAAACACA
CTGGAGCTGG TATCTTATCC ATGGCAAATG CTGGCCCAAA TACCAATGGT AGTCAGTTCT TTATTACTCT GGCACCTTGC
CCGTCTCTCG ATGGTAATTA TTCTGTTTCT TACTGTTTAG AATTTAGAGG TAATAAGCGT CTATTGTTAA AATTTATAAT
TACTTGTGAT TGTGAATCTT TGTTCTGTGT AACCCACTGG AATGTGGAGG ATTTTCAGCT TCGAAGGATT TTTTTTTCAG
TCCTAGTAAA TTGAAAGTTA AACATGTACT TCCATAAGTA GCTTGTTAAA TGATAACTCA GGGATGCAGC TCCATTCATA
TTTGCATAAA CTGTTAAACA CTTGGAAACT AAGAATGATG AAATATCATC TCTTTCTCAC TTGAGATATG AATAAGAAAT
TTCTAAATTG TACATATAAA GTGACTGCTT TATATGTACT GAAGCCTGAG GTCTCTGGAG GGTTTGGATT TGGATTTGAT
GATACTGATA GTGATGAAGT ATTAGCAATT AGCACAGTTA TATAAAACCT CTTGATCCCC ATCAATATAG ACTATTAACA
ACGGTTTAAA GAACTCTGAT ACAGAGAATA CGATAAAGTG TCTCGTTTGT GTTCCTTTTT GTTTTTGGAG AAGACACTGT
TTTAGGCATT ATAGTTAGCT CAGCTCTTCA TTCAGCTGTA TTTTTTTTCT CTTATTTTTC TTACGTATGT GATTTCTCTA
ATATAATTTC TGCATTTAAG GTAAACACTC CTGCAGTCGT ACTGATTAAT ATTTTTATTA ATTGCTAGAG TTGACTCAAG
TAAATAATTA GGCAAAGACA GGCTTGGTGG CGTCAGAATG ATGAACAGTT GCAATCACAT TATTTAGTTT ATGATTGATC
ATTCTAATTC ATTGCATGAA ATGTATGGAA TGTCTAATGA TACTCAATTC CTGTTTCTGT TCCCGCCAGG AAAACACACA
ATATTCGGAA GAGTGTGTAG GGGAATGGAA ATTATCAAAC GACTTGGCAG CGTCCAAACA GATAACAACG ATAGGTAAGT
CAAATATCTT TCAAGATAAC CATTTAAAAT ATATACTGTG CATATAGCCA ATAATTTTGC CCATAGACAA ATTTCTAAAC
AAGTTTTATT ACTGCGAGGT CTATGAATGA AGAGGAAGAA GCTACTATAG TGTGTATTTT GATAACTAGA GTATATTTAT
AGTAAGGGGA CTTCCATGAA GAACATAATT TTATGAAGAA ATGCTTTGAA CAACTTGTTG AAGTAAAAAT GAGGACTTTC
TATGATCTTA CTTTATGAAC TTTCCATGAA CATTTTCTGT TTCTTCAGGC CCATCCATGA CGTGAAGATA CTGCGTACCT
CAGTGAAGGA TTAATGATGA ACCAAACTAA ACAAAATGGC ATTTGAGAGT GCTATGAGGA GTCTTCAGAA CTGTCAATTT
TAATTTTTTG CTCTAATCAT CCATATGCTG AAGACATTTT TTTCAAGACT AGTTTTTGAG AAGCAGTATT GGAACTGTTT
ATGGCTGGGA AAGAAATTTG AATTTTAGAT AGATAACTCG CACTCCTGCT GTAGTTTTTA TTCATGGACG CAACGGAGAA
AAGTGGTTCT GTTCTGGCAT TGAGTACAAG CATGTTTGTA TCTGCGTTTT TCTGGCTGAT ATAGAATTGA GCTACCTGCG
ATTTCGGGAA AATTAAAAAC TCTTCGTC

>Vigan.04G348800.01
CCGATAGTGT GAGGCGTTCG CAAGCTCGAT TTGTCACAGG TCATTCTAAC AACGGACTCT AACTTTTTGT GAATCGAAAC
CGGAAGCCAT TGAAGCCACC GATTGATTCC TCCTCGAGGC CTCGTGACAC GCTGCAACCA AAAATCCAAC CCAATTCAAT
ATCTATATTC AAGACAAACG AAAAAAAAAG AATAAAGAAA AAAAAAACGC TCACGTATAT GGTGTGGCGG TTGGAGAAAC
CAAGAGCACG AACCAAACCA ATGCACTGAT TCTCAGCGCC AGCGAACCCG TTACCGATCA CAACAGCTCG CCGAATTGCA
CCGTCCAAAA TCTCCGGCAT TGTTTTTGCA TCAATTCAAA TGAGAGGGAA AAAGGGATTT TCTATTTCCC ACGTTCAAGT
TCTTTAAGTA GAATACGCGC CCGACCCGAC CCGACCCGAC CCAGTATAAA CGGGTTTAAA TTTTGTTCAT TTTATATGCG
GGAGAGTGAA AGGGGAGTGC TTGGTGTGTG AAGAAAATGT GGGCAAGCGC AGAAGGTGGT GCTCCGGAGG TTACTCTTGA
AACTTCCATG GGGTCCTTCA CAGTGGAGCT GTACTACAAG CATGCGCCCA GAACTTGCAG GAACTTCATT GAACTGTCTC
GCAGAGGTTA CTACGACAAC GTTAAATTCC ACAGGATCAT TAAGGACTTC ATAGTACAAG GTGGGGATCC TACTGGAACT
GGAAGAGGAG GAGAATCCAT ATACGGTGCA AAGTTTGAAG ATGAGATAAA ACGAGAGTTG AAACACACTG GAGCTGGTAT
CTTATCCATG GCAAATGCTG GCCCAAATAC CAATGGTAGT CAGTTCTTTA TTACTCTGGC ACCTTGCCCG TCTCTCGATG
GAAAACACAC AATATTCGGA AGAGTGTGTA GGGGAATGGA AATTATCAAA CGACTTGGCA GCGTCCAAAC AGATAACAAC
GATAGGCCCA TCCATGACGT GAAGATACTG CGTACCTCAG TGAAGGATTA ATGATGAACC AAACTAAACA AAATGGCATT
TGAGAGTGCT ATGAGGAGTC TTCAGAACTG TCAATTTTAA TTTTTTGCTC TAATCATCCA TATGCTGAAG ACATTTTTTT
CAAGACTAGT TTTTGAGAAG CAGTATTGGA ACTGTTTATG GCTGGGAAAG AAATTTGAAT TTTAGATAGA TAACTCGCAC
TCCTGCTGTA GTTTTTATTC ATGGACGCAA CGGAGAAAAG TGGTTCTGTT CTGGCATTGA GTACAAGCAT GTTTGTATCT
GCGTTTTTCT GGCTGATATA GAATTGAGCT ACCTGCGATT TCGGGAAAAT TAAAAACTCT TCGTC

>Vigan.04G348800.01
ATGTGGGCAA GCGCAGAAGG TGGTGCTCCG GAGGTTACTC TTGAAACTTC CATGGGGTCC TTCACAGTGG AGCTGTACTA
CAAGCATGCG CCCAGAACTT GCAGGAACTT CATTGAACTG TCTCGCAGAG GTTACTACGA CAACGTTAAA TTCCACAGGA
TCATTAAGGA CTTCATAGTA CAAGGTGGGG ATCCTACTGG AACTGGAAGA GGAGGAGAAT CCATATACGG TGCAAAGTTT
GAAGATGAGA TAAAACGAGA GTTGAAACAC ACTGGAGCTG GTATCTTATC CATGGCAAAT GCTGGCCCAA ATACCAATGG
TAGTCAGTTC TTTATTACTC TGGCACCTTG CCCGTCTCTC GATGGAAAAC ACACAATATT CGGAAGAGTG TGTAGGGGAA
TGGAAATTAT CAAACGACTT GGCAGCGTCC AAACAGATAA CAACGATAGG CCCATCCATG ACGTGAAGAT ACTGCGTACC
TCAGTGAAGG ATTAA

>Vigan.04G348800.01
MWASAEGGAP EVTLETSMGS FTVELYYKHA PRTCRNFIEL SRRGYYDNVK FHRIIKDFIV QGGDPTGTGR GGESIYGAKF
EDEIKRELKH TGAGILSMAN AGPNTNGSQF FITLAPCPSL DGKHTIFGRV CRGMEIIKRL GSVQTDNNDR PIHDVKILRT
SVKD*