GBrowse Details

Vigan.04G345000.01

Basic Information:
Name: Vigan.04G345000.01
Multiple alignment
Variant Information
Position: Chr04:46752479..46754065 (- strand)
Length: 1587
Functional Information:
Description: Similar to Terminal flower 1a. [E1CKY2, Vigna unguiculata]
InterPro: Phosphatidylethanolamine-binding, conserved site (IPR001858)
Phosphatidylethanolamine-binding protein PEBP (IPR008914)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.00,0.00,0.08,0.00,1.07,0.00
Arabidopsis thaliana homolog: AT5G03840.1
Automatic updates:
Name: NM_001252700 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein TERMINAL FLOWER 1-like (TFL1.1), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:46752479..46752786 (- strand)
Length: 308
Type: three_prime_UTR
Position: Chr04:46752787..46753004 (- strand)
Length: 218
Type: CDS
Position: Chr04:46753154..46753194 (- strand)
Length: 41
Type: CDS
Position: Chr04:46753555..46753616 (- strand)
Length: 62
Type: CDS
Position: Chr04:46753814..46754014 (- strand)
Length: 201
Type: CDS
Position: Chr04:46754015..46754065 (- strand)
Length: 51
Type: five_prime_UTR

>Vigan.04G345000.01 class=Sequence position=Chr04:46752479..46754065 (- strand)
TGTATTCCTC AGTTTCACTC TCTAAACTTT GTTCTCTTAC CCTTATTTGT AATGGCAAGA ATGCCTTTGG AACCTCTTAT
TGTGGGGAGA GTCATAGGAG AGGTTCTTGA CTCTTTTACC ACAACCACAA AAATGACTGT GAGTTATAAC AAAAAGCAAG
TCTACAATGG CCATGAGTTT TTCCCTTCAT CTATCAACAT CAAACCCAAG GTTGAGATTG AGGGTGATGA TATGAGATCC
TTTTTCACAC TGGTATCTGT TTCTCTTCCT CTCTTCTTCT TCCTCTTTTT CTTTAAATCA GTTAAAAAAT TAAAATGCTT
CAGCTGTTAT TTGTTGTTAT ATATATATAT ATATCTTCAA TCACGCTCAC GCATTATGTC TCTTTTAATG AAAGTGTGCC
CTTTACAAAC ACTGAATCAT TAAACTAATG TCTCCCTTTT TACGCGCAGA TCATGACAGA CCCTGATGTT CCAGGCCCTA
GTGACCCTTA TCTGAGAGAA CACTTGCACT GGTACTTAAC AGAAAGATAA ACTTTGTTTA AATACTTAGA CTACCCAAAT
GGAAATTTTA TGACATTTAA CACTTTGAAA GTAAGGAACC GGTTTAACAC CCGACATTCA TCACATCAAA CTACAGAGGT
AACAAACATA AGTATACATA CCTTTGTATT CTGTAAAAGT GGTAAGAAGT TGTCTGTTCT AGCTACCATC TTCGTCCACC
CACCCTAAAA CAAAAAACAG TCTTAAAGGG TGAATAAATC TCGATGTCTC AACAACAAAC ATAACAGAAC TGCATACACA
CATATAAGGT AAAGTAGCCA TTCTTAGGTA TCTAACAGTC AATAATTTTG TTGTAAATAT TCTTTTTGCA GGATAGTGAC
AGACATTCCA GGCACAACAG ATGCTACATT TGGTAGGTTC ATGTAAATGA TTGATCTACT AGGAAAAATG TGTGTATATT
ATATATGTAT ATATATATGT GTGGGAACTT ACTTGCTGTG TGTGCTGATC GATCGGATGA TGAGAGAGAC TGACAAACGA
AAAATGATGT TTTTTTTGTA GGGAAAGAGT TGGTGAGCTA TGAGATCCCA AAACCTAATA TTGGGATCCA TAGGTTTGTG
TTTGTCCTGT TCAAGCAAAA GCGTAGGCAG TGTGTTACTC CACCAACTTC AAGGGATCAG TTCAACACAC GCAATTTCGC
AGCACAGAAC GAGCTTGGGC TCCCAGTGGC TGCTGTCTAC TTCAATGCAC AGAGGGAAAC GGCTGCAAGA AGACGCTAGC
TAGCTTCCTA GCTATAGCTT CCTGCTCCTG CTTAGTCTTA TTTACCACTG CAACCAAAGT AGTGTAGTAT TGAATAAAGC
GATGATAAGT ACAAAGGAGT TTCAGTACTG CAGCTTAATC CTCCTCACAT GTGCCTCAAA TAACTCGCTG AACCAAGTTA
ATCATTTTCT AGTTTGACTA GTTTGTATGC TATGTTTTTA CTTTCCCATC CAATGTGTAC CTTCTGTATT ATACTGTACT
ACGTGTATTA TTATTACCTC CTGGATAATC CTATGAGGTC ATCTTATATA AACCAATAAG AGGTTTG

>Vigan.04G345000.01
TGTATTCCTC AGTTTCACTC TCTAAACTTT GTTCTCTTAC CCTTATTTGT AATGGCAAGA ATGCCTTTGG AACCTCTTAT
TGTGGGGAGA GTCATAGGAG AGGTTCTTGA CTCTTTTACC ACAACCACAA AAATGACTGT GAGTTATAAC AAAAAGCAAG
TCTACAATGG CCATGAGTTT TTCCCTTCAT CTATCAACAT CAAACCCAAG GTTGAGATTG AGGGTGATGA TATGAGATCC
TTTTTCACAC TGATCATGAC AGACCCTGAT GTTCCAGGCC CTAGTGACCC TTATCTGAGA GAACACTTGC ACTGGATAGT
GACAGACATT CCAGGCACAA CAGATGCTAC ATTTGGGAAA GAGTTGGTGA GCTATGAGAT CCCAAAACCT AATATTGGGA
TCCATAGGTT TGTGTTTGTC CTGTTCAAGC AAAAGCGTAG GCAGTGTGTT ACTCCACCAA CTTCAAGGGA TCAGTTCAAC
ACACGCAATT TCGCAGCACA GAACGAGCTT GGGCTCCCAG TGGCTGCTGT CTACTTCAAT GCACAGAGGG AAACGGCTGC
AAGAAGACGC TAGCTAGCTT CCTAGCTATA GCTTCCTGCT CCTGCTTAGT CTTATTTACC ACTGCAACCA AAGTAGTGTA
GTATTGAATA AAGCGATGAT AAGTACAAAG GAGTTTCAGT ACTGCAGCTT AATCCTCCTC ACATGTGCCT CAAATAACTC
GCTGAACCAA GTTAATCATT TTCTAGTTTG ACTAGTTTGT ATGCTATGTT TTTACTTTCC CATCCAATGT GTACCTTCTG
TATTATACTG TACTACGTGT ATTATTATTA CCTCCTGGAT AATCCTATGA GGTCATCTTA TATAAACCAA TAAGAGGTTT
G

>Vigan.04G345000.01
ATGGCAAGAA TGCCTTTGGA ACCTCTTATT GTGGGGAGAG TCATAGGAGA GGTTCTTGAC TCTTTTACCA CAACCACAAA
AATGACTGTG AGTTATAACA AAAAGCAAGT CTACAATGGC CATGAGTTTT TCCCTTCATC TATCAACATC AAACCCAAGG
TTGAGATTGA GGGTGATGAT ATGAGATCCT TTTTCACACT GATCATGACA GACCCTGATG TTCCAGGCCC TAGTGACCCT
TATCTGAGAG AACACTTGCA CTGGATAGTG ACAGACATTC CAGGCACAAC AGATGCTACA TTTGGGAAAG AGTTGGTGAG
CTATGAGATC CCAAAACCTA ATATTGGGAT CCATAGGTTT GTGTTTGTCC TGTTCAAGCA AAAGCGTAGG CAGTGTGTTA
CTCCACCAAC TTCAAGGGAT CAGTTCAACA CACGCAATTT CGCAGCACAG AACGAGCTTG GGCTCCCAGT GGCTGCTGTC
TACTTCAATG CACAGAGGGA AACGGCTGCA AGAAGACGCT AG

>Vigan.04G345000.01
MARMPLEPLI VGRVIGEVLD SFTTTTKMTV SYNKKQVYNG HEFFPSSINI KPKVEIEGDD MRSFFTLIMT DPDVPGPSDP
YLREHLHWIV TDIPGTTDAT FGKELVSYEI PKPNIGIHRF VFVLFKQKRR QCVTPPTSRD QFNTRNFAAQ NELGLPVAAV
YFNAQRETAA RRR*