GBrowse Details

Vigan.04G332600.01

Basic Information:
Name: Vigan.04G332600.01
Multiple alignment
Variant Information
Position: Chr04:45493969..45498860 (+ strand)
Length: 4892
Functional Information:
Description: Similar to Xyloglucan endotransglucosylase/hydrolase. [C5G5Y4, Phaseolus angularis]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: cellular glucan metabolic process (GO:0006073)
Cellular Component: cell wall (GO:0005618)
Cellular Component: apoplast (GO:0048046)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro: Glycoside hydrolase, family 16 (IPR000757)
Concanavalin A-like lectin/glucanases superfamily (IPR008985)
Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,6.18,0.45,19.97,3.34,0.73,17.76
Arabidopsis thaliana homolog: AT2G36870.1
Automatic updates:
Name: NM_001255045 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative xyloglucan endotransglucosylase/hydrolase (LOC100796698), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001329810 NCBI(nuccore)
Organism: Vigna angularis
Description: Vigna angularis probable xyloglucan endotransglucosylase/hydrolase protein 32 (LOC108322412), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:45493969..45496344 (+ strand)
Length: 2376
Type: five_prime_UTR
Position: Chr04:45496345..45496540 (+ strand)
Length: 196
Type: CDS
Position: Chr04:45496635..45496735 (+ strand)
Length: 101
Type: CDS
Position: Chr04:45496876..45497093 (+ strand)
Length: 218
Type: CDS
Position: Chr04:45497811..45498177 (+ strand)
Length: 367
Type: CDS
Position: Chr04:45498178..45498860 (+ strand)
Length: 683
Type: three_prime_UTR

>Vigan.04G332600.01 class=Sequence position=Chr04:45493969..45498860 (+ strand)
GAAAAATTGG ATGCTTCCTA CTAGCTGTTT ACGTGAAAGT TAGTGCAACT TTAAAGTCTG CATCAAATTT CAGTAAATCC
AATTAACCTT TTGATTTTTC AAAGAAGAAT GTTTGATTGT AATGTAAAAG TCTGAAGATG AACAATAAAA ATAGAGAAAA
AAAAAGATTA TATATTAAAA CCCACTTGAA CAAAAATTTT GAACATACAA GTGTAATGTT GGCATTGTTA CAATTATTGT
GCACAATATA TAGTTTTAAA AATTGAGGTG ATTATGCCAT TGATGTGAGC CTATATGTAG GAAAACATAA TTCATATACA
TTCATCATTC GGTGTTTGTA ACAAAATGAA TATTAGTAGC TGACAGGCAT ATTCAAAAGC AAAGGCTCAG TGAGTGTGAA
AAAGGCTATG ATATAGGCTT TTGTTGGATG AAAAATGTGA TTAAAGCAAA AGCATCCACA TTGAACCTAC TAATCCGAAA
ACATGACAAA CACAAATTAT TCAGACTCTA ACATGTGTGA TGCAAGAAGA ATGCATAGAA ATAGAAGGTT AATTTGACTT
TTGCAGAGTT TTTACAAGAA GTGAAGTATT GAAGTTTTTG ACTTGTCGGC CAAAGTGACC CTACCGGCCA CCATCTTCCA
ACCTTCCTCC ATTTCTCTTC CTCCGTGTGT GACCGACAAA ACAGTGCTTG CCCCAATCTT GTAAAATTTG TCTACACATA
GAGATCAAGA AAGAAGCTCT CTTGCAAGTT GTAATTGAAA AATGAGGGTG CACAAGTCCC CATTAAGCAG CACATTAATT
ATTTGCTCGC TTGATCAGGC TGCACTACCT GCTGTTACTT TCAAATCTAT TTTGTGGGGT TATTATTATT TCTACCAATT
CTTGAAGCCG TGTGTATAAC AAGACTTGTG TTTCAATAAT AGTACCTCCG TGTTTTGTGA TTTTGTGGTT TGTTTCAAGG
GAACCATGCA TGCCTCAAGT TCATGTACTT CAACACCTCA TACTTAAATT GTAGTTGGAT TCATGGGGCA CTGATCCACA
AGATCAATTC GAAAAGAGCT TCGAACCTTC TGTTTCCATT AGCAGACAAA ATTCAACGTC AAATTATTGG CTCACCACAG
ATTTCTTTAA CATGGTCACT TTTGTTTTGA TTATCTAAAT TCACTCATAC AACATGATCT TCCTCTCAGT CTACTTATCT
GTATATTTGG AGTTATAATG GCATAGTTAA CAAATTCTGA GTTATTAGCA GAACAGTGTG AGTGTACATG TTTTTTTCCT
TTTTGTTTAT CAAAGAGAAA AAAAAAGAAA AACATTTGAG GGCAATTGAA GTTAAATTCA GTATGGTTAG TACTTGTCCC
TATTCTGAAG GTTTGTTTAT GCTAAAAATG TGCATTGGTT GCAACCTATA TGGACTCATT TTCTTGATTG ATCAACATAT
TAAGAATATA AGGTATATTA TTCTACCATG AGTAAGAAGG ATTACTATAC GTGTCGATCA ATCATTCATG TGCCCCCATT
TCCAATCAAA TAAAGCTTTG GGGTCCATTA ATGGATAGCT ACTGACCCAC CACTCCATTG ATGAAATTCA CATGCTATAA
CACACCGTTA CTCACTTTGA TTCATGAGAA TTGACTAAAT CAGAATCTGC CCCACATTGC CTTTCGTTTT AACTTTTATC
TGTTTTATCA TTTATTCATT GGCTCGCTTT GGTCCTTATA TAGACATTTT ATGCTTGACT GAATGGTAAG TGACACAACG
GGAAGGGAAA TCGTGTGGTG AAAAGCACCA TACGATGGGG TTAATCCAGC TATTGCTTTC ACAGCTCAGA CAAAAATACC
TGTAGCCTTC AATGAAAAGG GAAAAGCCTA CAGACACAAG CCTAGGTTCT AGTTTGAATG TGAAAGCCAT GCAACACAAA
ATAAAGAGCC ACATTTAAGG CACATCCATC TACCCCTTCT GGATCCCATC ACCTGTTTCA AGCTTTCCAA CCTAGCTTAC
AGATTTTGTG TCATAAATAG ATGAGGTGTG AAAAAGTAGT TCCTGTGGGA AAAAAGAAAG TTACACCAAC CTAAAGCTGT
GAAAAATGCA AGTTATAATT GAATCAATGA TATGATATCC AACTATTAAA GACCTCCATT TTGTCTCTAA TGATGTATAA
ATAATTATTA CTGATATGTT TAATTCATCC AGTCCCTCCA TAATACCATC ATTTGATCTC AAATGGGGCC CCACTATTTT
TCTTATTTAT ATCAAACTGA CTACCACACT ATTCTCCCAT ATGCACCTTA CCTTGAGCAG TTTCTCTCTC ACAACTTTCA
TTTATACAAA ACAGCATCAT TCTCCTTTCT GCTAACACTT TAACTAGCTT TTCTTCATGG CTCTCTTTCT CTTTGCTATT
TTAGTCTTGA TGGCCCCTTC AAGCAATGCC TATTGGCCAC CCTCACCTGG CTACTGGCCA AGTTCCAAAT TCAGCTCTAT
GAGTTTTTAC AAAGGGTTTC GAAATCTCTG GGGCCCTCAG CACCAAAGTC TAGACCAAAA TGCATTAACA ATCTGGCTTG
ATAGAACCTC AGGTATGAAT CCGATCACTT TCAATGCTCT CTCTTTCTCT TGCATGATAT CATTGAAATC TTAATCCACC
TTCACTGCTT TGTTTCTGGA GAACAGGAAG TGGCTTCAAG TCAGTAAGGC CATTTCGATC CGGTTACTTT GGGGCTTCCA
TTAAGGTCCA ACCTGGCTAT ACTGCAGGAG TTATCACAGC TTTCTATGTA AGATATGGCC TCAAGAGATC ATATAATAAA
GTTTTATCGG TTGAAACTAA CTTGAAAGCT TACACTTTTT TGCGTAGTGC AGCTAGTTAA TTAATTGCTA TTATTAGTGA
ATATAATGAT TATTTGACTA ATGGCAGCTC TCAAACAATG AAGCACATCC TGGTTTCCAT GATGAAGTGG ACATCGAGTT
TCTTGGGACA ACATTTGGAA AGCCTTACAC TTTGCAGACG AATGTTTACA TAAGAGGGAG TGGAGATGGG AGAATTATAG
GTAGAGAGAT GAAGTTCCAT CTCTGGTTTG ATCCTACCAA AGATTTTCAT CACTATGCTA TTCTGTGGAG TCCCAAGGAA
ATAATGTGAG TCACTATGCA TAATACACTG TTACTGTTTC TGAATGTATG TGTGTGACTG TGGCTCTATT TGAAATTAAA
TGCATAGATT TTCAGTCCTA ATACGAAAGA AAAGGATAGA CAAGGTAGGA ACTACTTCGT TTTCTTCTGA AGTAGATAGG
TAGGAGTGAA GATCAAAGGA ACTTAGTAAG ATTGGATTCT GTGTATGTGG CATCAGATTG ATTGGTTCTT ATCATAAGGT
GTCACGGTCC AGCCAAAACT GATTGGCTAG ACATTTGATA TTCAGAATAC TTTTTTGATA TAATTTTCTA TAGAAAAGGA
CTAAAAATAA GTGATATGAT TATTGAAAAA TGTAGGAATG GTATAACCGG ACTGATATTT TTGTAAGATG GAAGGGCAAT
AATTTCATTT TGTGAAGTTA AGGCAAGTAG GGATTTGACA GGAATAGACA ATCATGTAGA AAAATGGTAG AATCAAGGTC
ACATGAGTGG CACAAAAAAC CCAAGCATCA AAGTGTGGGG TAAGCAAAAT CTGCTGACTC CCAGCTAATG AAAAAGCTAA
AAGTAACATT TAATTAATTG ATCTACTAGT TCCTTAGACA ACCGTAATTA TAAAATGAGT TTCAATTGTT GAGTGGTGCA
TAGGGTGAAT CTTAAAAAAG GGTGTGTCTG ATTTGTATTA CCTGGTTAAC ATTGCTTTCA CTGACATCGA AATGCGTGTC
AGATTCCTAG TGGATGATGT GCCAATAAGA AGGTACCCGA GGAAGAGTGG TGCAACGTTT CCTCTGAGGC CAATGTGGCT
ATATGGTTCA ATATGGGATG CTTCATCATG GGCAACTGAA GATGGAAAGT ACAAAGCTGA TTACAAATAC CAACCCTTTG
TGGCAAAGTA TTCGAACTTC AAAGCCAGTG GTTGCTCAGC CTATGCACCA CGGTGGTGCC ACCCAGTTTC AGCCTCACCA
TATAGGTCTG GTGGGTTGAC AAGACAACAG AACAGAGCCA TGAGATGGGT GCAGAGATAC CTGATGGTTT ATAACTACTG
TCAAGACCCC AAAAGAGATC ACAGTCTAAC ACCTGAGTGT TGGGGTTGAA CTTTGAAGTG TTCAAGTGTT ATTGAAGATT
TGATTATCTG GGAGTGAAAA AAATGTTACC TTTTTTTGGT CGCGAAAACT AAAACACTGT TGTCTTGTGA TTTGTTTTGT
TTTTTTGTTT GAGAAAGTTT GATTTACTTT ATGTGGGTCA GTTGTGATGG GGCCCCTGGC TTGGCAGCTG CATAATGCAA
GTGTACGGGG TTGTGCGTCC AAGGCTCTCA AGACACGAGA ATATTTGGAA GATTGTGTGT TTTATTTTTT CTTTCTTTTA
GACAGAGGAA AAGGAAAAGA AAGAGAGGGA AAAGGAATAA TATGAATGCC TATGTCCAAT GAAATGAAAA ATGGGTAATG
TGTATGGGTC GGTGAATGTA GCTCCATTGA GTGCGAATAC TAAAAAACCA CACACTTTAT TTAATAATGT TATTGTCATT
TCAATGATGA AAACCAGAAC CTCTCTCTCT GTGTTATGGG GAGAGGGGTA AGTGTGTTTT CTTGCATGAC TTTTTGGTGC
ATGTGAAACT TTATTACTAC CATGAAAAAG CTTATTGCAT GAAAATATAT ATTATTTGTA GCATGATTAT GTAGGAGGTT
GTGGACCTTT GGTTTCATTG GAAAGCAATC GAAAAGGAAA TGGGAATATT TAAAAGAGCA TGTAAATCAT ATGGAAAACT
TTATTAATGG AT

>Vigan.04G332600.01
GAAAAATTGG ATGCTTCCTA CTAGCTGTTT ACGTGAAAGT TAGTGCAACT TTAAAGTCTG CATCAAATTT CAGTAAATCC
AATTAACCTT TTGATTTTTC AAAGAAGAAT GTTTGATTGT AATGTAAAAG TCTGAAGATG AACAATAAAA ATAGAGAAAA
AAAAAGATTA TATATTAAAA CCCACTTGAA CAAAAATTTT GAACATACAA GTGTAATGTT GGCATTGTTA CAATTATTGT
GCACAATATA TAGTTTTAAA AATTGAGGTG ATTATGCCAT TGATGTGAGC CTATATGTAG GAAAACATAA TTCATATACA
TTCATCATTC GGTGTTTGTA ACAAAATGAA TATTAGTAGC TGACAGGCAT ATTCAAAAGC AAAGGCTCAG TGAGTGTGAA
AAAGGCTATG ATATAGGCTT TTGTTGGATG AAAAATGTGA TTAAAGCAAA AGCATCCACA TTGAACCTAC TAATCCGAAA
ACATGACAAA CACAAATTAT TCAGACTCTA ACATGTGTGA TGCAAGAAGA ATGCATAGAA ATAGAAGGTT AATTTGACTT
TTGCAGAGTT TTTACAAGAA GTGAAGTATT GAAGTTTTTG ACTTGTCGGC CAAAGTGACC CTACCGGCCA CCATCTTCCA
ACCTTCCTCC ATTTCTCTTC CTCCGTGTGT GACCGACAAA ACAGTGCTTG CCCCAATCTT GTAAAATTTG TCTACACATA
GAGATCAAGA AAGAAGCTCT CTTGCAAGTT GTAATTGAAA AATGAGGGTG CACAAGTCCC CATTAAGCAG CACATTAATT
ATTTGCTCGC TTGATCAGGC TGCACTACCT GCTGTTACTT TCAAATCTAT TTTGTGGGGT TATTATTATT TCTACCAATT
CTTGAAGCCG TGTGTATAAC AAGACTTGTG TTTCAATAAT AGTACCTCCG TGTTTTGTGA TTTTGTGGTT TGTTTCAAGG
GAACCATGCA TGCCTCAAGT TCATGTACTT CAACACCTCA TACTTAAATT GTAGTTGGAT TCATGGGGCA CTGATCCACA
AGATCAATTC GAAAAGAGCT TCGAACCTTC TGTTTCCATT AGCAGACAAA ATTCAACGTC AAATTATTGG CTCACCACAG
ATTTCTTTAA CATGGTCACT TTTGTTTTGA TTATCTAAAT TCACTCATAC AACATGATCT TCCTCTCAGT CTACTTATCT
GTATATTTGG AGTTATAATG GCATAGTTAA CAAATTCTGA GTTATTAGCA GAACAGTGTG AGTGTACATG TTTTTTTCCT
TTTTGTTTAT CAAAGAGAAA AAAAAAGAAA AACATTTGAG GGCAATTGAA GTTAAATTCA GTATGGTTAG TACTTGTCCC
TATTCTGAAG GTTTGTTTAT GCTAAAAATG TGCATTGGTT GCAACCTATA TGGACTCATT TTCTTGATTG ATCAACATAT
TAAGAATATA AGGTATATTA TTCTACCATG AGTAAGAAGG ATTACTATAC GTGTCGATCA ATCATTCATG TGCCCCCATT
TCCAATCAAA TAAAGCTTTG GGGTCCATTA ATGGATAGCT ACTGACCCAC CACTCCATTG ATGAAATTCA CATGCTATAA
CACACCGTTA CTCACTTTGA TTCATGAGAA TTGACTAAAT CAGAATCTGC CCCACATTGC CTTTCGTTTT AACTTTTATC
TGTTTTATCA TTTATTCATT GGCTCGCTTT GGTCCTTATA TAGACATTTT ATGCTTGACT GAATGGTAAG TGACACAACG
GGAAGGGAAA TCGTGTGGTG AAAAGCACCA TACGATGGGG TTAATCCAGC TATTGCTTTC ACAGCTCAGA CAAAAATACC
TGTAGCCTTC AATGAAAAGG GAAAAGCCTA CAGACACAAG CCTAGGTTCT AGTTTGAATG TGAAAGCCAT GCAACACAAA
ATAAAGAGCC ACATTTAAGG CACATCCATC TACCCCTTCT GGATCCCATC ACCTGTTTCA AGCTTTCCAA CCTAGCTTAC
AGATTTTGTG TCATAAATAG ATGAGGTGTG AAAAAGTAGT TCCTGTGGGA AAAAAGAAAG TTACACCAAC CTAAAGCTGT
GAAAAATGCA AGTTATAATT GAATCAATGA TATGATATCC AACTATTAAA GACCTCCATT TTGTCTCTAA TGATGTATAA
ATAATTATTA CTGATATGTT TAATTCATCC AGTCCCTCCA TAATACCATC ATTTGATCTC AAATGGGGCC CCACTATTTT
TCTTATTTAT ATCAAACTGA CTACCACACT ATTCTCCCAT ATGCACCTTA CCTTGAGCAG TTTCTCTCTC ACAACTTTCA
TTTATACAAA ACAGCATCAT TCTCCTTTCT GCTAACACTT TAACTAGCTT TTCTTCATGG CTCTCTTTCT CTTTGCTATT
TTAGTCTTGA TGGCCCCTTC AAGCAATGCC TATTGGCCAC CCTCACCTGG CTACTGGCCA AGTTCCAAAT TCAGCTCTAT
GAGTTTTTAC AAAGGGTTTC GAAATCTCTG GGGCCCTCAG CACCAAAGTC TAGACCAAAA TGCATTAACA ATCTGGCTTG
ATAGAACCTC AGGAAGTGGC TTCAAGTCAG TAAGGCCATT TCGATCCGGT TACTTTGGGG CTTCCATTAA GGTCCAACCT
GGCTATACTG CAGGAGTTAT CACAGCTTTC TATCTCTCAA ACAATGAAGC ACATCCTGGT TTCCATGATG AAGTGGACAT
CGAGTTTCTT GGGACAACAT TTGGAAAGCC TTACACTTTG CAGACGAATG TTTACATAAG AGGGAGTGGA GATGGGAGAA
TTATAGGTAG AGAGATGAAG TTCCATCTCT GGTTTGATCC TACCAAAGAT TTTCATCACT ATGCTATTCT GTGGAGTCCC
AAGGAAATAA TATTCCTAGT GGATGATGTG CCAATAAGAA GGTACCCGAG GAAGAGTGGT GCAACGTTTC CTCTGAGGCC
AATGTGGCTA TATGGTTCAA TATGGGATGC TTCATCATGG GCAACTGAAG ATGGAAAGTA CAAAGCTGAT TACAAATACC
AACCCTTTGT GGCAAAGTAT TCGAACTTCA AAGCCAGTGG TTGCTCAGCC TATGCACCAC GGTGGTGCCA CCCAGTTTCA
GCCTCACCAT ATAGGTCTGG TGGGTTGACA AGACAACAGA ACAGAGCCAT GAGATGGGTG CAGAGATACC TGATGGTTTA
TAACTACTGT CAAGACCCCA AAAGAGATCA CAGTCTAACA CCTGAGTGTT GGGGTTGAAC TTTGAAGTGT TCAAGTGTTA
TTGAAGATTT GATTATCTGG GAGTGAAAAA AATGTTACCT TTTTTTGGTC GCGAAAACTA AAACACTGTT GTCTTGTGAT
TTGTTTTGTT TTTTTGTTTG AGAAAGTTTG ATTTACTTTA TGTGGGTCAG TTGTGATGGG GCCCCTGGCT TGGCAGCTGC
ATAATGCAAG TGTACGGGGT TGTGCGTCCA AGGCTCTCAA GACACGAGAA TATTTGGAAG ATTGTGTGTT TTATTTTTTC
TTTCTTTTAG ACAGAGGAAA AGGAAAAGAA AGAGAGGGAA AAGGAATAAT ATGAATGCCT ATGTCCAATG AAATGAAAAA
TGGGTAATGT GTATGGGTCG GTGAATGTAG CTCCATTGAG TGCGAATACT AAAAAACCAC ACACTTTATT TAATAATGTT
ATTGTCATTT CAATGATGAA AACCAGAACC TCTCTCTCTG TGTTATGGGG AGAGGGGTAA GTGTGTTTTC TTGCATGACT
TTTTGGTGCA TGTGAAACTT TATTACTACC ATGAAAAAGC TTATTGCATG AAAATATATA TTATTTGTAG CATGATTATG
TAGGAGGTTG TGGACCTTTG GTTTCATTGG AAAGCAATCG AAAAGGAAAT GGGAATATTT AAAAGAGCAT GTAAATCATA
TGGAAAACTT TATTAATGGA T

>Vigan.04G332600.01
ATGGCTCTCT TTCTCTTTGC TATTTTAGTC TTGATGGCCC CTTCAAGCAA TGCCTATTGG CCACCCTCAC CTGGCTACTG
GCCAAGTTCC AAATTCAGCT CTATGAGTTT TTACAAAGGG TTTCGAAATC TCTGGGGCCC TCAGCACCAA AGTCTAGACC
AAAATGCATT AACAATCTGG CTTGATAGAA CCTCAGGAAG TGGCTTCAAG TCAGTAAGGC CATTTCGATC CGGTTACTTT
GGGGCTTCCA TTAAGGTCCA ACCTGGCTAT ACTGCAGGAG TTATCACAGC TTTCTATCTC TCAAACAATG AAGCACATCC
TGGTTTCCAT GATGAAGTGG ACATCGAGTT TCTTGGGACA ACATTTGGAA AGCCTTACAC TTTGCAGACG AATGTTTACA
TAAGAGGGAG TGGAGATGGG AGAATTATAG GTAGAGAGAT GAAGTTCCAT CTCTGGTTTG ATCCTACCAA AGATTTTCAT
CACTATGCTA TTCTGTGGAG TCCCAAGGAA ATAATATTCC TAGTGGATGA TGTGCCAATA AGAAGGTACC CGAGGAAGAG
TGGTGCAACG TTTCCTCTGA GGCCAATGTG GCTATATGGT TCAATATGGG ATGCTTCATC ATGGGCAACT GAAGATGGAA
AGTACAAAGC TGATTACAAA TACCAACCCT TTGTGGCAAA GTATTCGAAC TTCAAAGCCA GTGGTTGCTC AGCCTATGCA
CCACGGTGGT GCCACCCAGT TTCAGCCTCA CCATATAGGT CTGGTGGGTT GACAAGACAA CAGAACAGAG CCATGAGATG
GGTGCAGAGA TACCTGATGG TTTATAACTA CTGTCAAGAC CCCAAAAGAG ATCACAGTCT AACACCTGAG TGTTGGGGTT
GA

>Vigan.04G332600.01
MALFLFAILV LMAPSSNAYW PPSPGYWPSS KFSSMSFYKG FRNLWGPQHQ SLDQNALTIW LDRTSGSGFK SVRPFRSGYF
GASIKVQPGY TAGVITAFYL SNNEAHPGFH DEVDIEFLGT TFGKPYTLQT NVYIRGSGDG RIIGREMKFH LWFDPTKDFH
HYAILWSPKE IIFLVDDVPI RRYPRKSGAT FPLRPMWLYG SIWDASSWAT EDGKYKADYK YQPFVAKYSN FKASGCSAYA
PRWCHPVSAS PYRSGGLTRQ QNRAMRWVQR YLMVYNYCQD PKRDHSLTPE CWG*