GBrowse Details

Vigan.04G299800.01

Basic Information:
Name: Vigan.04G299800.01
Multiple alignment
Variant Information
Position: Chr04:42177952..42181072 (- strand)
Length: 3121
Functional Information:
Description: Similar to Uncharacterized protein. [I1N9I2, Glycine max]
GO: Molecular Function: intramolecular lyase activity (GO:0016872)
InterPro: Chalcone isomerase (IPR016087)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:168.83,81.79,36.86,35.55,49.38,53.15,4.70,20.20
Arabidopsis thaliana homolog: AT3G63170.1
Automatic updates:
Name: NM_001364455 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chalcone isomerase (CHI3B2), mRNA.
PubMed ID: 25385351 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:42177952..42178236 (- strand)
Length: 285
Type: three_prime_UTR
Position: Chr04:42178237..42178370 (- strand)
Length: 134
Type: CDS
Position: Chr04:42179145..42179236 (- strand)
Length: 92
Type: CDS
Position: Chr04:42180027..42180276 (- strand)
Length: 250
Type: CDS
Position: Chr04:42180610..42180967 (- strand)
Length: 358
Type: CDS
Position: Chr04:42180968..42181072 (- strand)
Length: 105
Type: five_prime_UTR

>Vigan.04G299800.01 class=Sequence position=Chr04:42177952..42181072 (- strand)
TTAATTTAAT AATATAACAA TAATTACGGG CGCGCGTGTG GTTATTTCCT TGCGGTGATG CCTTGCTTGT CTGCACTCTG
AATCGGTGGA ACTAACGAAG CCAAGATGGC GTCCATGCGC TTCCCTTTCT CTTTTCCTCA GCCCCAACCG CCTCAATTCC
CTCGCCCCTT CACCGCATTT GCTGTTGGTG CTGCCATCGC CGGTGCCTCC GCCGCCGTCG TGGCTGTCTC CTCCTCCTCC
GACCGCCCCT TTCTCAGGAA TGCCCTGAAT TCCGTCTTCT CTTCTGGCCA CTCGTTGCCT CTCTGGGGTT CACTCAGCTT
GGCCGACAGT GGGGTTTCCG TGCTTGAATC AAAGACTGGA ATTTCCTTCC CTTCGGTTCT AGCCTCTTCT CAAAAACTCT
GCGGAATTGG GTTGCGAAAA AAAAGCGTCT TGGGTTTGAA GAACATTGAT GTATACGCAT TTGGTATGCC ATTTTACTTT
CCCTCCACCA CCGCTGTCAC CCTCACGGAT TTAAATGCAA AAACGACAAC AAAAAAGGAT CTTTTCCCAA TTTAGGATAA
TAATACTTTG GTCTTATGAA ATAATAACTC AGATGCAAAA GAATCTACGT AGAATCCCTT TCCGATACCG TATCGGCATG
TTTTTTGTAA CTTAACTTTA GTAAATTGCT ACGACTTTGA TCTGGGTTTG GAAAGAAAGG AAAAGGAAGA TGTTAGTTTT
GAAATGTATA TGGAATAGTG ATCAAGGGAC AATCCTAACT TTTATTGTAT TTGGAAATTT GTGTTGTTTG TTGAAGGTGT
TTATGCTGAT GATGATGACA TAAAGACTCA TCTTTCTGAT AAATATGGGA AGTTCTCCGC GTCTGAATTG CAGGGCAATA
AGGAGTTTAT TGACGATCTT ATGGACAATG ATATACCCAT GACAGTTAGG CTTCAAATTG TGTATGGGAG ATTGAGCATT
CGTTCTGTGC GTAGTGCATT TGAAGAGTCT GTAGGAAGTA GGCTGCAGAA ATTTGGGGGA TCAGACAATA AAGAATTGCT
TCAAAGGTGA ATAGTTCCTT CAACTGTCAA TCTCATTTTC GTATTATAGA ATTAGTCATC ACATGTATGT GTTTGATTCC
ATATTCGAAT CCTGTAACGT GGATAGAAGA CGTGAAAAAA CCAGAAGCTT GTACATATAG CTTTTCACTT GACGGGGGTG
CAGGTATGAA TTTTCTGCTA TGCAACAGGA AACCAAACAC GCATTACTTC TGTAAAACTT GTGAAATTGC AGATTTATAA
TTGAAACCTC CCTTTCACAC ACAAAAACTT ACAAAATGTT TGTCTAAAAG GTAAGTATGT GCATATAGTT GTAACACTTC
AGAACTCTTT TTAGTGTTGG GTAAGTTTGC TTTTGGTTGG TATTAAATTT GAAGTTTTTT TCCGTTTGCT TTTCCTTTCC
TTCTCTAGCT TTGGTGCACT GTTTGCTGCT TCAAAGGAAC GAAATAATTT TAAAAAAAGG ACACCTAGTT TGGTTTGCAA
AGGGGGAGAG GAAGGAAAAT AAAGCTATTT GCCATCATAC CCACACTTTA GATAAATAAG ACAGTTACAA TCAAATGTTC
AAGTTAAATA TAATTTAGTT CGACATAACC TAAGTGTTAA CTACTGTCTG TTCCCTCCAA ATCTCCCATT ATTGGAGAGG
AGGAGAAAAA AAAATGAAAG GAGAAAATTT GGCCCCTTAT CATCTTCTCC AAGTATTTGA ACTAAAGAAG CCGTTTTTTA
GCCTTTTTCT CTATTCTATA TCTATCCAAC GCAATACTAT GCAACTCAAA GATATCTCTA TAATGCTTTG GTGTAGGTTC
ACTTCCCAGT TTAGAGATGA AATAAAATTA CCTCGTGGAT CTGTAATTCA TCTCTCAAGA GAGAAGGGCC ATGTTCTTAA
CACCTCAAGT AAGTGATCTT TCTCTGTCTG CATTTCTATC TCAAGTTTCA GAATTATAAA AGTGCAAAAT ATTTTTCCTG
CTTCATGTGT TTTGTACTAG GAAAAATCTG GTGTTAAAGA TTCGATTGAG AACTCATGAA TATGTTTCTT CTCTCTACTA
CATTCTTCAA TTTAGAACTG AATCTAACTT ATTGGGTACC CCATTATACA CCATACCAAA TTGGTTTCAT GTATGTATTA
AACAGAGATA AAAATAAATG ATGATATTTT ATTGATACAT AAGGAAATGG GTGGAATGAA ACAACTATTA CTCTTTTATG
TTCTGCAACT GACAGTTGGA TTATGAGAAA AGGTTGTTTC AAACAATTCA GGTAATGTTG AAACATGGAT GAGGTATTTT
CTCATTTTAT ACTTGAAATG AATCTTTTGA GAAATTAGCA TTGGTGTCAG ATAGTAACTG ACCTATCAGG GTTTCTGTAA
TAGCTAGTAC AACTACCTCA AGTAAAGGTT TCACTTTTAT ATTCAAACTT TGAATTATCT GATATCTCAT GCAATACACC
TTGGTGGTGA GTTCATTCTC TGGAGCCCAT TTTTAAGCGT TTAACATGGG AGACCTTTCA AAGTGGAACT GGTACAACAG
TGTGCTTTAT AAATGTTCAA TGCAAATTTT TAGCGGCTAG CATTAGGTCT TTCAGTCACT TTATGTTATT AATGCAAATG
CTCTATATTT TTCTTACATT GGTACTTGAA TTTTTGACAT TAATTTATCT TGTTTCTTGT AGTTGATGGA CAGGAAGTGG
GAAGCATCAA GAGTAAACTC CTATGTAAGT CAATTTTAGA TTTATATTGT GGTGAAGAAG CATTTGATAA ACAGGCCAAA
GAAGAAATTG AGCACAACGT GGCTTCTTAC CTCTAGAGGT AGAATCTTAG GCTTGGAATC ATCTTTAAAA CATGGATTCT
GAACCTTTTT TAATTCCCTG CTCTGAGTAA TTTTTAGTTT ATGCATACCC GGAACTTCAA GATTGCAATA TGAATTTATT
CATATTTCTA TCAGCTATCT TGTAAAAGAG GACTTTTCTG AACTCGTACA AATCATAACG CATCTTCTAA GTGGGTTGAC
TAGACCTAGA TTTGTTTTGT TGTGAAAATG GAAATTTGAT CCTCACTTTT GAGTTTAAGC TTTTTTACTG TACAGTGTCT
C

>Vigan.04G299800.01
TTAATTTAAT AATATAACAA TAATTACGGG CGCGCGTGTG GTTATTTCCT TGCGGTGATG CCTTGCTTGT CTGCACTCTG
AATCGGTGGA ACTAACGAAG CCAAGATGGC GTCCATGCGC TTCCCTTTCT CTTTTCCTCA GCCCCAACCG CCTCAATTCC
CTCGCCCCTT CACCGCATTT GCTGTTGGTG CTGCCATCGC CGGTGCCTCC GCCGCCGTCG TGGCTGTCTC CTCCTCCTCC
GACCGCCCCT TTCTCAGGAA TGCCCTGAAT TCCGTCTTCT CTTCTGGCCA CTCGTTGCCT CTCTGGGGTT CACTCAGCTT
GGCCGACAGT GGGGTTTCCG TGCTTGAATC AAAGACTGGA ATTTCCTTCC CTTCGGTTCT AGCCTCTTCT CAAAAACTCT
GCGGAATTGG GTTGCGAAAA AAAAGCGTCT TGGGTTTGAA GAACATTGAT GTATACGCAT TTGGTGTTTA TGCTGATGAT
GATGACATAA AGACTCATCT TTCTGATAAA TATGGGAAGT TCTCCGCGTC TGAATTGCAG GGCAATAAGG AGTTTATTGA
CGATCTTATG GACAATGATA TACCCATGAC AGTTAGGCTT CAAATTGTGT ATGGGAGATT GAGCATTCGT TCTGTGCGTA
GTGCATTTGA AGAGTCTGTA GGAAGTAGGC TGCAGAAATT TGGGGGATCA GACAATAAAG AATTGCTTCA AAGGTTCACT
TCCCAGTTTA GAGATGAAAT AAAATTACCT CGTGGATCTG TAATTCATCT CTCAAGAGAG AAGGGCCATG TTCTTAACAC
CTCAATTGAT GGACAGGAAG TGGGAAGCAT CAAGAGTAAA CTCCTATGTA AGTCAATTTT AGATTTATAT TGTGGTGAAG
AAGCATTTGA TAAACAGGCC AAAGAAGAAA TTGAGCACAA CGTGGCTTCT TACCTCTAGA GGTAGAATCT TAGGCTTGGA
ATCATCTTTA AAACATGGAT TCTGAACCTT TTTTAATTCC CTGCTCTGAG TAATTTTTAG TTTATGCATA CCCGGAACTT
CAAGATTGCA ATATGAATTT ATTCATATTT CTATCAGCTA TCTTGTAAAA GAGGACTTTT CTGAACTCGT ACAAATCATA
ACGCATCTTC TAAGTGGGTT GACTAGACCT AGATTTGTTT TGTTGTGAAA ATGGAAATTT GATCCTCACT TTTGAGTTTA
AGCTTTTTTA CTGTACAGTG TCTC

>Vigan.04G299800.01
ATGGCGTCCA TGCGCTTCCC TTTCTCTTTT CCTCAGCCCC AACCGCCTCA ATTCCCTCGC CCCTTCACCG CATTTGCTGT
TGGTGCTGCC ATCGCCGGTG CCTCCGCCGC CGTCGTGGCT GTCTCCTCCT CCTCCGACCG CCCCTTTCTC AGGAATGCCC
TGAATTCCGT CTTCTCTTCT GGCCACTCGT TGCCTCTCTG GGGTTCACTC AGCTTGGCCG ACAGTGGGGT TTCCGTGCTT
GAATCAAAGA CTGGAATTTC CTTCCCTTCG GTTCTAGCCT CTTCTCAAAA ACTCTGCGGA ATTGGGTTGC GAAAAAAAAG
CGTCTTGGGT TTGAAGAACA TTGATGTATA CGCATTTGGT GTTTATGCTG ATGATGATGA CATAAAGACT CATCTTTCTG
ATAAATATGG GAAGTTCTCC GCGTCTGAAT TGCAGGGCAA TAAGGAGTTT ATTGACGATC TTATGGACAA TGATATACCC
ATGACAGTTA GGCTTCAAAT TGTGTATGGG AGATTGAGCA TTCGTTCTGT GCGTAGTGCA TTTGAAGAGT CTGTAGGAAG
TAGGCTGCAG AAATTTGGGG GATCAGACAA TAAAGAATTG CTTCAAAGGT TCACTTCCCA GTTTAGAGAT GAAATAAAAT
TACCTCGTGG ATCTGTAATT CATCTCTCAA GAGAGAAGGG CCATGTTCTT AACACCTCAA TTGATGGACA GGAAGTGGGA
AGCATCAAGA GTAAACTCCT ATGTAAGTCA ATTTTAGATT TATATTGTGG TGAAGAAGCA TTTGATAAAC AGGCCAAAGA
AGAAATTGAG CACAACGTGG CTTCTTACCT CTAG

>Vigan.04G299800.01
MASMRFPFSF PQPQPPQFPR PFTAFAVGAA IAGASAAVVA VSSSSDRPFL RNALNSVFSS GHSLPLWGSL SLADSGVSVL
ESKTGISFPS VLASSQKLCG IGLRKKSVLG LKNIDVYAFG VYADDDDIKT HLSDKYGKFS ASELQGNKEF IDDLMDNDIP
MTVRLQIVYG RLSIRSVRSA FEESVGSRLQ KFGGSDNKEL LQRFTSQFRD EIKLPRGSVI HLSREKGHVL NTSIDGQEVG
SIKSKLLCKS ILDLYCGEEA FDKQAKEEIE HNVASYL*