GBrowse Details

Vigan.04G285600.01

Basic Information:
Name: Vigan.04G285600.01
Multiple alignment
Variant Information
Position: Chr04:40820220..40822377 (- strand)
Length: 2158
Functional Information:
Description: Similar to uncharacterized protein. [C6T8X5, Glycine max]
InterPro: Rhodanese-like domain (IPR001763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.40,5.61,19.22,111.73,2.90,9.21,0.47,22.57
Arabidopsis thaliana homolog: AT2G42220.1
Automatic updates:
Name: BT090703 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-14H21 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:40820220..40820613 (- strand)
Length: 394
Type: three_prime_UTR
Position: Chr04:40820614..40820684 (- strand)
Length: 71
Type: CDS
Position: Chr04:40820762..40820866 (- strand)
Length: 105
Type: CDS
Position: Chr04:40820945..40821030 (- strand)
Length: 86
Type: CDS
Position: Chr04:40821385..40821535 (- strand)
Length: 151
Type: CDS
Position: Chr04:40821622..40821878 (- strand)
Length: 257
Type: CDS
Position: Chr04:40822136..40822302 (- strand)
Length: 167
Type: CDS
Position: Chr04:40822303..40822377 (- strand)
Length: 75
Type: five_prime_UTR

>Vigan.04G285600.01 class=Sequence position=Chr04:40820220..40822377 (- strand)
CCAGCAAGGG TACCCGTGAA GTTTTAGAAT CTTGAAGGCT TTAAGATTTC ACAGATATTT GACACGTGGC AGAAAATGAT
TGCCGATTTC AAATTTCATG GCCCACTAAA TTTAACAGGT GGCATGATTG AGTTCACCTT TGAAAGACAG CTTCAGCGGA
TGGATACGAG TGTCAAACAA TTTTCATTTT CATACAAAAT GGCAGGAACT GGTTTCTACA CTTCCTGTCT TTCCTCTTCC
AGGTAACTAA CTCTTCTTAA CTTGTGTTTT TGTTTAATAT GTTCAAATTG TTATTTATAC TGATAGCATA ACAAATTCTC
AAAAAAGTAA CTTTATTTTA TCTTGGGGTT TTCTTTCCTA GATTCTCTGC ATGTTTAACT TTAGATTCTG CCTTTCAAGA
TTAACCATGT TGGTGAAAAC AGTAGTGAAG TGCAAGTTCA GTTAATGTTT GAAAAATCTA TGTGGACATG GTTGTGAGGG
ATTAAGGTTG TTTTTTCAGC AACTTAGGGG CATGTTGGTT GGTATTAAAA ACTCACAATG CAAGGGCCCT GCCAGGGAAA
CTACCTGGAA CTGGAATGAG AAGATTGGCA ATAAGAGCAG AAGTTGAATT TGTGAACGCT GACAAGGCGA AGGAACTTGT
AGAAGTGGAT GGGTATGCTG TTCTTGATGT GAGGGACAAG AATCAATTTG AACGAGCTCA CATAAAATCT TGTAGTCATG
TGCCTCTTTT TATTGAAAAC AAAGACAATG ATCCTGGTAT GGAGTTTCTC CTTCCTAAAA ACTTTATGTG GGCATGTTGT
TCTGCTTCAA TTTTGTTACT CTGCCACTTT CGCTTTCTGT AGGTACTATT ATCAAAAGGC AACTGCACAA TAACTTTTCT
GGGTTGTTCT TTGGGTTGCC ATTCACTAAG CCAAATCCTG ATTTTATACA ATCTGTTAAG ACCCAGTTTC CACCTGAAAG
TAAACTCTTG GTTGTGTGCC AGGAAGGACT GAGGTTTGTT TATGATTTCC TACCCAATTT GACTGCAAAT TATGTACACC
GTCTGGTTAT ATTGACAGGA TGACGCTTGC ATTGATATGT TTAGGTCCTT AACTTCACCT TTGTAGAATA CAGAACCTCA
ACATTCATGT TTTAAAACCA CAAACTACAA TGTATTTGTG TTTTAAGAAT GCTATGAGTT GTTCCAGTAA ATAATGTTTG
TCATCGCCTC AAGGACTTCT AGATGTCTAC TGTGGGGACA AAATGATACA TCAAATTCCT ATAGATTGGC TTGAATTTAG
ACTGTGCTTG TATTGAGTTT TAATAGTCTA ATGTAAGAGT TTGAGATTTT CTTTGTTCTT TGTCAAGGTC TGCTGCTGCA
GCAGATAAGT TAGAGAAAGC TGGTTATGAA AATATAGCAT GCATAACATC TGGCCTTCAA ACCGTAAAAC CAGGTTTAGT
AATTGTTTGA CTTAGATTTA GAAGTTAACT TATCTTCTAG GATAATCAAC TAAACTATTT CTATTATGTA GGGACATTTG
AGTCTGTAGG GTCCACAGAG TTGGAGAATG CAGGCAAAGC TGGTTTGGTG ACAATCCAAG GAAAAATCTC AACTGTGTTG
GGAACGATTC TTGTTTGTGA GTTCTTTTCT TTTCAACAAA TTTCAATTAC TACTTTTTAT GCTGGTATTG ATTTGTTTAA
ATGAAATTTT CAGGTGCATA TATATTCGTT ACATTCTTCC CTGAGCAAGC AGAGAAGCTA TTCCAATTGG CCCCTACAGG
ATAAGCCTAA AAATTCCATT ATAGTCGTTC TTGATTTTGT TCTTTCCCAC TCTTTATGCA TGTAGAGTAA TAAAGGAACG
TGTGATTAGA ATTGAGGAAC CAAAAACAAA AGATGAAATA TGAACAAAGT GATGGAAGAG TTAGTAGCGT GAGTATGGAT
ACAATCGTTA AGTAATCAAA TTGTTTAGTA TTCTCCATTG AGAAAGGACG TATATACCCA TTTGGAATGT TAAAGATACC
AGTTATTTAG AATTTATACT GCTACTGTAG TTTTCCTTTG AAGATAGTTC ATTTTCTTTT CTTTTCTTCT TGTTGCCGTT
TGTTGTATAA AAGAAAGGTT TATAGTGTGA TAATGATGCT TATGATATGA TGCTTTTATC TGTGCTTCAT GTTTAAAA

>Vigan.04G285600.01
CCAGCAAGGG TACCCGTGAA GTTTTAGAAT CTTGAAGGCT TTAAGATTTC ACAGATATTT GACACGTGGC AGAAAATGAT
TGCCGATTTC AAATTTCATG GCCCACTAAA TTTAACAGGT GGCATGATTG AGTTCACCTT TGAAAGACAG CTTCAGCGGA
TGGATACGAG TGTCAAACAA TTTTCATTTT CATACAAAAT GGCAGGAACT GGTTTCTACA CTTCCTGTCT TTCCTCTTCC
AGCAACTTAG GGGCATGTTG GTTGGTATTA AAAACTCACA ATGCAAGGGC CCTGCCAGGG AAACTACCTG GAACTGGAAT
GAGAAGATTG GCAATAAGAG CAGAAGTTGA ATTTGTGAAC GCTGACAAGG CGAAGGAACT TGTAGAAGTG GATGGGTATG
CTGTTCTTGA TGTGAGGGAC AAGAATCAAT TTGAACGAGC TCACATAAAA TCTTGTAGTC ATGTGCCTCT TTTTATTGAA
AACAAAGACA ATGATCCTGG TACTATTATC AAAAGGCAAC TGCACAATAA CTTTTCTGGG TTGTTCTTTG GGTTGCCATT
CACTAAGCCA AATCCTGATT TTATACAATC TGTTAAGACC CAGTTTCCAC CTGAAAGTAA ACTCTTGGTT GTGTGCCAGG
AAGGACTGAG GTCTGCTGCT GCAGCAGATA AGTTAGAGAA AGCTGGTTAT GAAAATATAG CATGCATAAC ATCTGGCCTT
CAAACCGTAA AACCAGGGAC ATTTGAGTCT GTAGGGTCCA CAGAGTTGGA GAATGCAGGC AAAGCTGGTT TGGTGACAAT
CCAAGGAAAA ATCTCAACTG TGTTGGGAAC GATTCTTGTT TGTGCATATA TATTCGTTAC ATTCTTCCCT GAGCAAGCAG
AGAAGCTATT CCAATTGGCC CCTACAGGAT AAGCCTAAAA ATTCCATTAT AGTCGTTCTT GATTTTGTTC TTTCCCACTC
TTTATGCATG TAGAGTAATA AAGGAACGTG TGATTAGAAT TGAGGAACCA AAAACAAAAG ATGAAATATG AACAAAGTGA
TGGAAGAGTT AGTAGCGTGA GTATGGATAC AATCGTTAAG TAATCAAATT GTTTAGTATT CTCCATTGAG AAAGGACGTA
TATACCCATT TGGAATGTTA AAGATACCAG TTATTTAGAA TTTATACTGC TACTGTAGTT TTCCTTTGAA GATAGTTCAT
TTTCTTTTCT TTTCTTCTTG TTGCCGTTTG TTGTATAAAA GAAAGGTTTA TAGTGTGATA ATGATGCTTA TGATATGATG
CTTTTATCTG TGCTTCATGT TTAAAA

>Vigan.04G285600.01
ATGATTGCCG ATTTCAAATT TCATGGCCCA CTAAATTTAA CAGGTGGCAT GATTGAGTTC ACCTTTGAAA GACAGCTTCA
GCGGATGGAT ACGAGTGTCA AACAATTTTC ATTTTCATAC AAAATGGCAG GAACTGGTTT CTACACTTCC TGTCTTTCCT
CTTCCAGCAA CTTAGGGGCA TGTTGGTTGG TATTAAAAAC TCACAATGCA AGGGCCCTGC CAGGGAAACT ACCTGGAACT
GGAATGAGAA GATTGGCAAT AAGAGCAGAA GTTGAATTTG TGAACGCTGA CAAGGCGAAG GAACTTGTAG AAGTGGATGG
GTATGCTGTT CTTGATGTGA GGGACAAGAA TCAATTTGAA CGAGCTCACA TAAAATCTTG TAGTCATGTG CCTCTTTTTA
TTGAAAACAA AGACAATGAT CCTGGTACTA TTATCAAAAG GCAACTGCAC AATAACTTTT CTGGGTTGTT CTTTGGGTTG
CCATTCACTA AGCCAAATCC TGATTTTATA CAATCTGTTA AGACCCAGTT TCCACCTGAA AGTAAACTCT TGGTTGTGTG
CCAGGAAGGA CTGAGGTCTG CTGCTGCAGC AGATAAGTTA GAGAAAGCTG GTTATGAAAA TATAGCATGC ATAACATCTG
GCCTTCAAAC CGTAAAACCA GGGACATTTG AGTCTGTAGG GTCCACAGAG TTGGAGAATG CAGGCAAAGC TGGTTTGGTG
ACAATCCAAG GAAAAATCTC AACTGTGTTG GGAACGATTC TTGTTTGTGC ATATATATTC GTTACATTCT TCCCTGAGCA
AGCAGAGAAG CTATTCCAAT TGGCCCCTAC AGGATAA

>Vigan.04G285600.01
MIADFKFHGP LNLTGGMIEF TFERQLQRMD TSVKQFSFSY KMAGTGFYTS CLSSSSNLGA CWLVLKTHNA RALPGKLPGT
GMRRLAIRAE VEFVNADKAK ELVEVDGYAV LDVRDKNQFE RAHIKSCSHV PLFIENKDND PGTIIKRQLH NNFSGLFFGL
PFTKPNPDFI QSVKTQFPPE SKLLVVCQEG LRSAAAADKL EKAGYENIAC ITSGLQTVKP GTFESVGSTE LENAGKAGLV
TIQGKISTVL GTILVCAYIF VTFFPEQAEK LFQLAPTG*