GBrowse Details

Vigan.04G258300.01

Basic Information:
Name: Vigan.04G258300.01
Multiple alignment
Variant Information
Position: Chr04:37661125..37662994 (+ strand)
Length: 1870
Functional Information:
Description: Similar to Uncharacterized protein. [I1N8N4, Glycine max]
GO: Biological Process: photosynthesis (GO:0015979)
Cellular Component: photosystem II (GO:0009523)
Cellular Component: photosystem II oxygen evolving complex (GO:0009654)
Cellular Component: extrinsic to membrane (GO:0019898)
Molecular Function: calcium ion binding (GO:0005509)
InterPro: Photosystem II PsbP, oxygen evolving complex (IPR002683)
Mog1/PsbP, alpha/beta/alpha sandwich (IPR016123)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.05,0.08,5.22,37.84,1.35,5.30,0.15,4.38
Arabidopsis thaliana homolog: AT3G56650.1
Automatic updates:
Name: NM_001255775 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max psbP domain-containing protein 6, chloroplastic-like (LOC100813771), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:37661125..37661259 (+ strand)
Length: 135
Type: five_prime_UTR
Position: Chr04:37661260..37661566 (+ strand)
Length: 307
Type: CDS
Position: Chr04:37662056..37662372 (+ strand)
Length: 317
Type: CDS
Position: Chr04:37662612..37662782 (+ strand)
Length: 171
Type: CDS
Position: Chr04:37662783..37662994 (+ strand)
Length: 212
Type: three_prime_UTR

>Vigan.04G258300.01 class=Sequence position=Chr04:37661125..37662994 (+ strand)
CAGAGGGGGA GTATGAAGTG TGATCGTGGT GTGTCCACAG TGGATAAGAG ACAGAGTGAG TTAGATTCTA ACATCAACCT
TAAACCTTGT CCCTCCATAC AAACATTTCA CTAACATTAA GCCCCCCAAT CTGAAATGGC AACCTTTCCA TTCACTTCCT
TATTCCCACT CACACTCTCA TCTCCATCTT CATCTTTCAA GCTCTCGACT TTGCATGCTT TCAGAGCCTC AACTTCCGAG
TATGTTTCCT TCCGGCACAC ACCCAGAAGG GAATTCTTGA AGGGTCTTGC TTTGATGCCT CTTCCTCTTG TTGTGCTGAG
AGAGCCACCC CCTTCACATG CTAGAGAAGT TGAGGTTGGA TCCTTCCTCC CACCCTCACC CTCTGACCCT TCTTTCGTTC
TCTTCACCGC CTCTCCCAAG GACACTCCCG CCCTTCGAGC AGGTACATGG ATTTAACACT ACAGACAGAG TTCAATTGTT
CACATTTGTG GCCGGAGTGA GTGCTAGTAT AGATAATTAT TTCATGGTTG TGTATTTGAG CATCACATTG TTTAGCTTCG
TGTGCAAGGA CAATTTGTGA TTACGATTAA TTTTTGGTGT TCCAAGAACC TGAATTATTT GATAGGCTAA GGAAGCTATG
ATTTTGATTA CTCTTATGCA GACAATTTGG CTTGTTAATC GATAATTTTG CACCTCTCAG TTGCATATTT GAAAATTATA
GCTGTAATTC TGGAGCTTTG TGACTCTGAA AAAGGTCTCA TTGTATTAGA ATCTAGGTCT GATTAACGTA CAATTTTGTT
ACTGTGTCTA CTCTCATCCT CCCCATGAAT TGTATATGTA TACATATTTG AGAGAAAAAG CATATATGAG GCATTTGATC
TTGCCTAATG TTGTTCTATG CAAATGATAG TCTAGATTTA GTTCTTTGCA GGAAATGTGC AGCCATACAA GTTTCTCCTC
CCCCCAACTT GGAAACAGGC TCGTGTAGCA AACATATTAT CTGGAAATTA CTGTCAGCCA AAGTGTGCAG AGCCTTGGGT
GGAGGTTAAG TTTGAAGATG AAAAGCAGGG AAAGGTTCAG GTAGTGGCTT CGCCTTTGAT ACGCCTTACC AACAAACCGA
ATGCAACAAT TGAAGACATT GGTAGCCCAG AAAAGCTGAT TGCTTCTCTT GGCCCTTTTG TCACTGGAAA CACACTTGAT
CCAGAAGAGC TCATTGAGAC TTCAGTAGAA AAGCTTGGTG ATCAGACGGT ACATTTCTTT CCTAAACACT TACATTTTTG
CTTTTACATG TTAGAAAAGG AAGAAACTGA ATGAAGTACT CAACCAATAA GTTTAATAAT TACTAGTCTT TTACTTTTTT
CAACACTCAC AAAATCAATG GCAGAACAAA AGTGTTCCAG TTGAAGCACT TCACTAAAAC GACCATGTAG AACAGGTTTA
TACAGAGATG TATATTAGTG ACCAACATTC TGAAACGTTA TCTGCAGTAC TACAAATATG TGCTTGAAAC TCCATATGCT
TTAACTGGCA CACACAATCT TGCGAAAGCA ACAGCAAAGG GAAACACTGT TGTGCTGTTT GTGGTCAGTG CCAATGACAA
GCAGTGGCAA ACGTCTGAGG AGACTCTAAA GACCGTGCTT GATTCCTTCC AAGTTTAGTT TTCTGTCAGG TAAATAAAGA
AGTTTACCAT CAGTTTATTT CTTTCTAGTT TTGTTTATAC AAAAAGACTC AGCAATGCAT TGGTCACCAT TTCAAATTTT
GTGTTTGGAG GTTGAATCAT GTTTAAATGC TTTAACTTCA TAGCAGTATG ACCTTTTTCT TCTTTGTATA TACCTCATTG
AATAAACGAC ATATGTTTGG ATTGTCTTAA 

>Vigan.04G258300.01
CAGAGGGGGA GTATGAAGTG TGATCGTGGT GTGTCCACAG TGGATAAGAG ACAGAGTGAG TTAGATTCTA ACATCAACCT
TAAACCTTGT CCCTCCATAC AAACATTTCA CTAACATTAA GCCCCCCAAT CTGAAATGGC AACCTTTCCA TTCACTTCCT
TATTCCCACT CACACTCTCA TCTCCATCTT CATCTTTCAA GCTCTCGACT TTGCATGCTT TCAGAGCCTC AACTTCCGAG
TATGTTTCCT TCCGGCACAC ACCCAGAAGG GAATTCTTGA AGGGTCTTGC TTTGATGCCT CTTCCTCTTG TTGTGCTGAG
AGAGCCACCC CCTTCACATG CTAGAGAAGT TGAGGTTGGA TCCTTCCTCC CACCCTCACC CTCTGACCCT TCTTTCGTTC
TCTTCACCGC CTCTCCCAAG GACACTCCCG CCCTTCGAGC AGGAAATGTG CAGCCATACA AGTTTCTCCT CCCCCCAACT
TGGAAACAGG CTCGTGTAGC AAACATATTA TCTGGAAATT ACTGTCAGCC AAAGTGTGCA GAGCCTTGGG TGGAGGTTAA
GTTTGAAGAT GAAAAGCAGG GAAAGGTTCA GGTAGTGGCT TCGCCTTTGA TACGCCTTAC CAACAAACCG AATGCAACAA
TTGAAGACAT TGGTAGCCCA GAAAAGCTGA TTGCTTCTCT TGGCCCTTTT GTCACTGGAA ACACACTTGA TCCAGAAGAG
CTCATTGAGA CTTCAGTAGA AAAGCTTGGT GATCAGACGT ACTACAAATA TGTGCTTGAA ACTCCATATG CTTTAACTGG
CACACACAAT CTTGCGAAAG CAACAGCAAA GGGAAACACT GTTGTGCTGT TTGTGGTCAG TGCCAATGAC AAGCAGTGGC
AAACGTCTGA GGAGACTCTA AAGACCGTGC TTGATTCCTT CCAAGTTTAG TTTTCTGTCA GGTAAATAAA GAAGTTTACC
ATCAGTTTAT TTCTTTCTAG TTTTGTTTAT ACAAAAAGAC TCAGCAATGC ATTGGTCACC ATTTCAAATT TTGTGTTTGG
AGGTTGAATC ATGTTTAAAT GCTTTAACTT CATAGCAGTA TGACCTTTTT CTTCTTTGTA TATACCTCAT TGAATAAACG
ACATATGTTT GGATTGTCTT AA

>Vigan.04G258300.01
ATGGCAACCT TTCCATTCAC TTCCTTATTC CCACTCACAC TCTCATCTCC ATCTTCATCT TTCAAGCTCT CGACTTTGCA
TGCTTTCAGA GCCTCAACTT CCGAGTATGT TTCCTTCCGG CACACACCCA GAAGGGAATT CTTGAAGGGT CTTGCTTTGA
TGCCTCTTCC TCTTGTTGTG CTGAGAGAGC CACCCCCTTC ACATGCTAGA GAAGTTGAGG TTGGATCCTT CCTCCCACCC
TCACCCTCTG ACCCTTCTTT CGTTCTCTTC ACCGCCTCTC CCAAGGACAC TCCCGCCCTT CGAGCAGGAA ATGTGCAGCC
ATACAAGTTT CTCCTCCCCC CAACTTGGAA ACAGGCTCGT GTAGCAAACA TATTATCTGG AAATTACTGT CAGCCAAAGT
GTGCAGAGCC TTGGGTGGAG GTTAAGTTTG AAGATGAAAA GCAGGGAAAG GTTCAGGTAG TGGCTTCGCC TTTGATACGC
CTTACCAACA AACCGAATGC AACAATTGAA GACATTGGTA GCCCAGAAAA GCTGATTGCT TCTCTTGGCC CTTTTGTCAC
TGGAAACACA CTTGATCCAG AAGAGCTCAT TGAGACTTCA GTAGAAAAGC TTGGTGATCA GACGTACTAC AAATATGTGC
TTGAAACTCC ATATGCTTTA ACTGGCACAC ACAATCTTGC GAAAGCAACA GCAAAGGGAA ACACTGTTGT GCTGTTTGTG
GTCAGTGCCA ATGACAAGCA GTGGCAAACG TCTGAGGAGA CTCTAAAGAC CGTGCTTGAT TCCTTCCAAG TTTAG

>Vigan.04G258300.01
MATFPFTSLF PLTLSSPSSS FKLSTLHAFR ASTSEYVSFR HTPRREFLKG LALMPLPLVV LREPPPSHAR EVEVGSFLPP
SPSDPSFVLF TASPKDTPAL RAGNVQPYKF LLPPTWKQAR VANILSGNYC QPKCAEPWVE VKFEDEKQGK VQVVASPLIR
LTNKPNATIE DIGSPEKLIA SLGPFVTGNT LDPEELIETS VEKLGDQTYY KYVLETPYAL TGTHNLAKAT AKGNTVVLFV
VSANDKQWQT SEETLKTVLD SFQV*