GBrowse Details

Vigan.04G218100.01

Basic Information:
Name: Vigan.04G218100.01
Multiple alignment
Variant Information
Position: Chr04:32011712..32015314 (+ strand)
Length: 3603
Functional Information:
Description: Similar to Uncharacterized protein. [I1N7Y8, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: F-box domain (IPR001810)
Leucine-rich repeat, cysteine-containing subtype (IPR006553)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:42.19,49.80,30.46,45.24,24.66,45.54,74.29,38.06
Arabidopsis thaliana homolog: AT1G12820.1, AT3G26810.1, AT3G62980.1, AT4G03190.1, AT4G24390.2, AT5G49980.1
Automatic updates:
Name: NM_001358247 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max auxin signaling F-box 3 protein (GMAFB3A), mRNA.
PubMed ID: 28598036 NCBI(pubmed)
Status: Known Variant
Name: NM_001358249 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max auxin signaling F-box 3 protein (GMAFB3B), mRNA.
PubMed ID: 28598036 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:32011712..32012660 (+ strand)
Length: 949
Type: five_prime_UTR
Position: Chr04:32012661..32013115 (+ strand)
Length: 455
Type: CDS
Position: Chr04:32013742..32014237 (+ strand)
Length: 496
Type: CDS
Position: Chr04:32014324..32015091 (+ strand)
Length: 768
Type: CDS
Position: Chr04:32015092..32015314 (+ strand)
Length: 223
Type: three_prime_UTR

>Vigan.04G218100.01 class=Sequence position=Chr04:32011712..32015314 (+ strand)
GTGAGACTTT AGCAGAGGGT GAGGCTCACT TGGAAAGCAG TGACAAGGAC TGATGCATGT TCACGCACTC AACGGTCAAG
ATTCTCTCAA TATCCCATCA TCAAAATCGA CGCCTGCGCT CTCTCAGATT TCATTCGAAA GCCCCCAACC AACCATCCTT
CCTGGTTGAG TTAACCTACG ATATGGTAAC CATGGTTAAA TAAATCCACA CTCAACTCAA CCAGTTGGGT TTACTTCCTT
TCTTTCACTT CACCACCACC TCCTCCCTCT CTTCTTTCCC CTTCTTCTTC TGCTCCTCTT CTTCTTACCT CATTCACTCC
TTTTGTTTTT AACACAGAAC ATGTGAGTGA GTCACACCAA TGGTTTGAGT CTTTCTCTCA TTCTAAGCTC TAAGCTCAGT
CACCTCTTGT GTGGCTTGGT CTAAAGTGTA AATTAAGATT TCTGCCAAAC TTGGATTTTC TCAGATCTAT CCTACTTCTC
TTTTTATCCT TTTATCCTGT TTCGAAATCG TCATCATCAC CTTTTGATTT GCAAGATCAT AATTTTTCTG TTTTGGGTTT
CCTCTCTTCC ACCTCATTGC TCATTTTTTT TTTCTCTGGT TGGTTTTTCC TTGTCAAAAA TTGAGTTTTT TTGGCTACCC
TCCAAGCAGA TCCCAGTTGG GGAGTATAAA ATTTTCAGTT TTTATCAGTA CCCTCTTTTT AGACTCCCCT GATGTTCTAG
ATTTCAAGAT TTGTTTTCTC ACTCTCTTGT TTCGGCCTAG ATCTGTTCCC ACTTTTTCTG GCTTTAGATC TTGGTTTTCT
CCATGATGTG GTAGAACTTC AAATTTAGGA GCCTTACCTT TCCGGGGTGT TTTTGTTTTT CCTATCCTTG TATGGAGTAT
GAAAGCTTTC CTGGAAAGTT TGGGAGTTTG GATCACTGAG TAAGAGAAAG AGAAACGTCA AGAAAAAAAA TGATGAATTA
TTTCCCCGAC GAGGTAATAG AGCACATATT TGATTATGTG GTTTCACACC GTGACCGGAA CGCTTTGTCT TTGGTGTGTA
AAAGTTGGTA CAGGATAGAG AGGTGTACGA GGCAGAGGGT GTTCATAGGG AACTGTTACT CTATCTCTCC AGAGAGGTTG
ATCCAAAGGT TTCCTGGTCT CAAGTCTTTG ACTTTGAAGG GAAAGCCTCA TTTTGCTGAC TTCAGTTTGG TTCCTTACGG
GTGGGGTGGT TTTGTGTGTC CATGGATTGA GGCTCTGGCC AAGAGCAGAG TTGGGTTGGA GGAGCTTAGG CTCAAGAGGA
TGGTGGTCTC GGATGAGAGC CTGGAGCTAC TTTCTCGTTC TTTCACAAAC TTTAAGTCTT TGGTTCTTGT TAGCTGTGAA
GGGTTCTCCA CCGATGGCCT TGCTGCCGTA GCTGCTAATT GCAGGTGAGA ATAAGTTGTG AGTTTGAGTC TTCTGCTGGT
TTAGATTTAA GCTTTTGTTG CACAAGTTTT GTTGGTTTGT CTGTCTTTGC ACTATATATG GTTCGTGGGG GGCTTTTTGG
AACATGTTTG ATGACTTCCT ACTGCTTTTT GTGTCTTGGA GGATATATGG CTGAAGGTAT ATTCTGATTA GTTTGGTCTT
TGTCTTCTTG TGCTGTCAAA GTTTTGAGTT GTTTTCGACA TTTCTAAGGT GTCTTCTGGC TTGTATTCTT TGTATGTACC
AGTTTGGGAT AAAGGAGTTT AATTAGTTGA GTAAGAGTTG CTGAGTGAAT GGCTTTGAAC TTGCTTTTGG TACATGTCAA
GCCATGCAGC AAAGGTCCCG GAGGATCTTG GGAGCTTGAC TGATCTGTTA TTAACAAAAG TTGATTGCCT GTCTGTGAAT
TGCACATGAT TAGGAGTTTT TTTATTTTTT TTTAATCTTG GAACAACATG GTCCTGTGAA ATAATATCCA TTTTGCATGT
GGTACGAGTG GGGATGGTGA AGCTCTTGCC GATTGAGAAT AGAGTAAGGA TTCTTGGAAT GTGTTCTTGA CTCCCAATGT
TGCTGGTGTT TTACTTGTTT TGAAATGTAG GTATCTTAGG GAGCTGGATC TGCAAGAAAA TGAAGTTGAA GATCACAAAG
GGCAGTGGCT AAGTTGCTTT CCTGATAGCT GCACATCGCT TGTCTCTCTG AATTTCGCTT GCCTTAAAGG AGAGGTTAGT
TTGGGAGCTC TAGAGAGACT TGTGGCCAGG TCTCCTAACC TCAAGAGTTT GAAGCTGAAT CGTTCAGTTC CCCTTGATGC
CCTGCAAAGG ATAATGACAC GAGCACCTCA ACTAGCGGAT TTGGGAATTG GATCGTTTGT CCAAGATCCT GAATCAGAGG
CATTCATAAA GCTCAAGAAC ACCATTCTCA AGTGCAAGTC CATAACCAGT TTGTCAGGAC TTTTGGAAGT TGCTCCTCAC
TGTCTTGCTG CGATATTTCC CATTTGCCCC AATTTAACAT CCTTAAACTT GAGCTATGCA GCAGGCATTC AGGGCAGTGA
TCTGATAAAA CTAATTCGCC ACTGTGTGAA ACTACAGCGC TTATGGGTAA ATACATCAAA TTTTCAGAAC ATTCTAATTT
TATTTGTTAA TTCTTCAATT GTTGAATATA ACAAATTCCT CAACTTTTTC AGATAATGGA TTGCATTGGA GACAAAGGAC
TTGGTGTTGT AGCCAAGACA TGTACAGATT TGCAAGAACT GAGGGTGTTT CCATCCGTTC CCTTTGGAAA TGCATTGGCT
GTCACAGAAG TGGGACTTGT TGCAATATCA GTGGGGTGCC CCAAGCTTCA TTCATTGCTC TACTTCTGCC ACCAGATGAC
AAATGCTGCA CTGATTACAG TGGCCAAGAA CTGCCCCAAT TTCATCCGCT TCAGGTTATG CATCCTTGAT GCAACAAAAC
CTGACCCTGA TACAATGCAG CCGCTGGACG AAGGTTTTGG TGCAATTGTG CAGTCTTGCC GGCGACTGAG GCGGCTATCA
CTCTCAGGGA AGTTGACAGA CCAGGTTTTC CTTTACATTG GAATGTATGC TGAGAAGCTT GAAATGCTGT CTATTGCATT
TGCTGGAGAC AGTGACAAGG GAATGCTGTA TGTGTTGAAT GGATGCAAGA AAATGAGGAA GCTTGAGATA AGAGATTGCC
CTTTTGGTGA CTTGGCACTT CTGACAGACG TAGGGAAGTA TGAAACAATG CGATCCCTTT GGATGTCGTC CTGCGAAGTG
ACTGTGGGAG CCTGCAAGTT GCTGGCCAAG AAGATGCCAA GGTTGAATGT GGAGATCTTC AATGAAAGTG AGCAAGAAGA
TTGCATCTTG GAAGATGGGC AAAGGGTAGA GAAAATGTAT TTGTATCGTA CATTGGCTGG GAAAAGGAAA GATGCACCAG
AATATGTATG GACTCTCTAG GTGCATTTTA GCTCATTTAA TTTCTTGTTA TTCAGATGTT TGTACTTGTT TCTAGGCTGA
CTCATTAATG CAATTTTAGC CGGGTGTAGT GTTTTCTCAC TTACTTGCAT TTCCTACTTT TATACATATC TTAGATTTGC
CTTTTTCCCC TCGTTATTAT TATTCCACTT TTTCAGAAGT ATCATGCCAC TTTTTCATCT CTTGTATTCT CGGTAGAGTT
CAG

>Vigan.04G218100.01
GTGAGACTTT AGCAGAGGGT GAGGCTCACT TGGAAAGCAG TGACAAGGAC TGATGCATGT TCACGCACTC AACGGTCAAG
ATTCTCTCAA TATCCCATCA TCAAAATCGA CGCCTGCGCT CTCTCAGATT TCATTCGAAA GCCCCCAACC AACCATCCTT
CCTGGTTGAG TTAACCTACG ATATGGTAAC CATGGTTAAA TAAATCCACA CTCAACTCAA CCAGTTGGGT TTACTTCCTT
TCTTTCACTT CACCACCACC TCCTCCCTCT CTTCTTTCCC CTTCTTCTTC TGCTCCTCTT CTTCTTACCT CATTCACTCC
TTTTGTTTTT AACACAGAAC ATGTGAGTGA GTCACACCAA TGGTTTGAGT CTTTCTCTCA TTCTAAGCTC TAAGCTCAGT
CACCTCTTGT GTGGCTTGGT CTAAAGTGTA AATTAAGATT TCTGCCAAAC TTGGATTTTC TCAGATCTAT CCTACTTCTC
TTTTTATCCT TTTATCCTGT TTCGAAATCG TCATCATCAC CTTTTGATTT GCAAGATCAT AATTTTTCTG TTTTGGGTTT
CCTCTCTTCC ACCTCATTGC TCATTTTTTT TTTCTCTGGT TGGTTTTTCC TTGTCAAAAA TTGAGTTTTT TTGGCTACCC
TCCAAGCAGA TCCCAGTTGG GGAGTATAAA ATTTTCAGTT TTTATCAGTA CCCTCTTTTT AGACTCCCCT GATGTTCTAG
ATTTCAAGAT TTGTTTTCTC ACTCTCTTGT TTCGGCCTAG ATCTGTTCCC ACTTTTTCTG GCTTTAGATC TTGGTTTTCT
CCATGATGTG GTAGAACTTC AAATTTAGGA GCCTTACCTT TCCGGGGTGT TTTTGTTTTT CCTATCCTTG TATGGAGTAT
GAAAGCTTTC CTGGAAAGTT TGGGAGTTTG GATCACTGAG TAAGAGAAAG AGAAACGTCA AGAAAAAAAA TGATGAATTA
TTTCCCCGAC GAGGTAATAG AGCACATATT TGATTATGTG GTTTCACACC GTGACCGGAA CGCTTTGTCT TTGGTGTGTA
AAAGTTGGTA CAGGATAGAG AGGTGTACGA GGCAGAGGGT GTTCATAGGG AACTGTTACT CTATCTCTCC AGAGAGGTTG
ATCCAAAGGT TTCCTGGTCT CAAGTCTTTG ACTTTGAAGG GAAAGCCTCA TTTTGCTGAC TTCAGTTTGG TTCCTTACGG
GTGGGGTGGT TTTGTGTGTC CATGGATTGA GGCTCTGGCC AAGAGCAGAG TTGGGTTGGA GGAGCTTAGG CTCAAGAGGA
TGGTGGTCTC GGATGAGAGC CTGGAGCTAC TTTCTCGTTC TTTCACAAAC TTTAAGTCTT TGGTTCTTGT TAGCTGTGAA
GGGTTCTCCA CCGATGGCCT TGCTGCCGTA GCTGCTAATT GCAGGTATCT TAGGGAGCTG GATCTGCAAG AAAATGAAGT
TGAAGATCAC AAAGGGCAGT GGCTAAGTTG CTTTCCTGAT AGCTGCACAT CGCTTGTCTC TCTGAATTTC GCTTGCCTTA
AAGGAGAGGT TAGTTTGGGA GCTCTAGAGA GACTTGTGGC CAGGTCTCCT AACCTCAAGA GTTTGAAGCT GAATCGTTCA
GTTCCCCTTG ATGCCCTGCA AAGGATAATG ACACGAGCAC CTCAACTAGC GGATTTGGGA ATTGGATCGT TTGTCCAAGA
TCCTGAATCA GAGGCATTCA TAAAGCTCAA GAACACCATT CTCAAGTGCA AGTCCATAAC CAGTTTGTCA GGACTTTTGG
AAGTTGCTCC TCACTGTCTT GCTGCGATAT TTCCCATTTG CCCCAATTTA ACATCCTTAA ACTTGAGCTA TGCAGCAGGC
ATTCAGGGCA GTGATCTGAT AAAACTAATT CGCCACTGTG TGAAACTACA GCGCTTATGG ATAATGGATT GCATTGGAGA
CAAAGGACTT GGTGTTGTAG CCAAGACATG TACAGATTTG CAAGAACTGA GGGTGTTTCC ATCCGTTCCC TTTGGAAATG
CATTGGCTGT CACAGAAGTG GGACTTGTTG CAATATCAGT GGGGTGCCCC AAGCTTCATT CATTGCTCTA CTTCTGCCAC
CAGATGACAA ATGCTGCACT GATTACAGTG GCCAAGAACT GCCCCAATTT CATCCGCTTC AGGTTATGCA TCCTTGATGC
AACAAAACCT GACCCTGATA CAATGCAGCC GCTGGACGAA GGTTTTGGTG CAATTGTGCA GTCTTGCCGG CGACTGAGGC
GGCTATCACT CTCAGGGAAG TTGACAGACC AGGTTTTCCT TTACATTGGA ATGTATGCTG AGAAGCTTGA AATGCTGTCT
ATTGCATTTG CTGGAGACAG TGACAAGGGA ATGCTGTATG TGTTGAATGG ATGCAAGAAA ATGAGGAAGC TTGAGATAAG
AGATTGCCCT TTTGGTGACT TGGCACTTCT GACAGACGTA GGGAAGTATG AAACAATGCG ATCCCTTTGG ATGTCGTCCT
GCGAAGTGAC TGTGGGAGCC TGCAAGTTGC TGGCCAAGAA GATGCCAAGG TTGAATGTGG AGATCTTCAA TGAAAGTGAG
CAAGAAGATT GCATCTTGGA AGATGGGCAA AGGGTAGAGA AAATGTATTT GTATCGTACA TTGGCTGGGA AAAGGAAAGA
TGCACCAGAA TATGTATGGA CTCTCTAGGT GCATTTTAGC TCATTTAATT TCTTGTTATT CAGATGTTTG TACTTGTTTC
TAGGCTGACT CATTAATGCA ATTTTAGCCG GGTGTAGTGT TTTCTCACTT ACTTGCATTT CCTACTTTTA TACATATCTT
AGATTTGCCT TTTTCCCCTC GTTATTATTA TTCCACTTTT TCAGAAGTAT CATGCCACTT TTTCATCTCT TGTATTCTCG
GTAGAGTTCA G

>Vigan.04G218100.01
ATGATGAATT ATTTCCCCGA CGAGGTAATA GAGCACATAT TTGATTATGT GGTTTCACAC CGTGACCGGA ACGCTTTGTC
TTTGGTGTGT AAAAGTTGGT ACAGGATAGA GAGGTGTACG AGGCAGAGGG TGTTCATAGG GAACTGTTAC TCTATCTCTC
CAGAGAGGTT GATCCAAAGG TTTCCTGGTC TCAAGTCTTT GACTTTGAAG GGAAAGCCTC ATTTTGCTGA CTTCAGTTTG
GTTCCTTACG GGTGGGGTGG TTTTGTGTGT CCATGGATTG AGGCTCTGGC CAAGAGCAGA GTTGGGTTGG AGGAGCTTAG
GCTCAAGAGG ATGGTGGTCT CGGATGAGAG CCTGGAGCTA CTTTCTCGTT CTTTCACAAA CTTTAAGTCT TTGGTTCTTG
TTAGCTGTGA AGGGTTCTCC ACCGATGGCC TTGCTGCCGT AGCTGCTAAT TGCAGGTATC TTAGGGAGCT GGATCTGCAA
GAAAATGAAG TTGAAGATCA CAAAGGGCAG TGGCTAAGTT GCTTTCCTGA TAGCTGCACA TCGCTTGTCT CTCTGAATTT
CGCTTGCCTT AAAGGAGAGG TTAGTTTGGG AGCTCTAGAG AGACTTGTGG CCAGGTCTCC TAACCTCAAG AGTTTGAAGC
TGAATCGTTC AGTTCCCCTT GATGCCCTGC AAAGGATAAT GACACGAGCA CCTCAACTAG CGGATTTGGG AATTGGATCG
TTTGTCCAAG ATCCTGAATC AGAGGCATTC ATAAAGCTCA AGAACACCAT TCTCAAGTGC AAGTCCATAA CCAGTTTGTC
AGGACTTTTG GAAGTTGCTC CTCACTGTCT TGCTGCGATA TTTCCCATTT GCCCCAATTT AACATCCTTA AACTTGAGCT
ATGCAGCAGG CATTCAGGGC AGTGATCTGA TAAAACTAAT TCGCCACTGT GTGAAACTAC AGCGCTTATG GATAATGGAT
TGCATTGGAG ACAAAGGACT TGGTGTTGTA GCCAAGACAT GTACAGATTT GCAAGAACTG AGGGTGTTTC CATCCGTTCC
CTTTGGAAAT GCATTGGCTG TCACAGAAGT GGGACTTGTT GCAATATCAG TGGGGTGCCC CAAGCTTCAT TCATTGCTCT
ACTTCTGCCA CCAGATGACA AATGCTGCAC TGATTACAGT GGCCAAGAAC TGCCCCAATT TCATCCGCTT CAGGTTATGC
ATCCTTGATG CAACAAAACC TGACCCTGAT ACAATGCAGC CGCTGGACGA AGGTTTTGGT GCAATTGTGC AGTCTTGCCG
GCGACTGAGG CGGCTATCAC TCTCAGGGAA GTTGACAGAC CAGGTTTTCC TTTACATTGG AATGTATGCT GAGAAGCTTG
AAATGCTGTC TATTGCATTT GCTGGAGACA GTGACAAGGG AATGCTGTAT GTGTTGAATG GATGCAAGAA AATGAGGAAG
CTTGAGATAA GAGATTGCCC TTTTGGTGAC TTGGCACTTC TGACAGACGT AGGGAAGTAT GAAACAATGC GATCCCTTTG
GATGTCGTCC TGCGAAGTGA CTGTGGGAGC CTGCAAGTTG CTGGCCAAGA AGATGCCAAG GTTGAATGTG GAGATCTTCA
ATGAAAGTGA GCAAGAAGAT TGCATCTTGG AAGATGGGCA AAGGGTAGAG AAAATGTATT TGTATCGTAC ATTGGCTGGG
AAAAGGAAAG ATGCACCAGA ATATGTATGG ACTCTCTAG

>Vigan.04G218100.01
MMNYFPDEVI EHIFDYVVSH RDRNALSLVC KSWYRIERCT RQRVFIGNCY SISPERLIQR FPGLKSLTLK GKPHFADFSL
VPYGWGGFVC PWIEALAKSR VGLEELRLKR MVVSDESLEL LSRSFTNFKS LVLVSCEGFS TDGLAAVAAN CRYLRELDLQ
ENEVEDHKGQ WLSCFPDSCT SLVSLNFACL KGEVSLGALE RLVARSPNLK SLKLNRSVPL DALQRIMTRA PQLADLGIGS
FVQDPESEAF IKLKNTILKC KSITSLSGLL EVAPHCLAAI FPICPNLTSL NLSYAAGIQG SDLIKLIRHC VKLQRLWIMD
CIGDKGLGVV AKTCTDLQEL RVFPSVPFGN ALAVTEVGLV AISVGCPKLH SLLYFCHQMT NAALITVAKN CPNFIRFRLC
ILDATKPDPD TMQPLDEGFG AIVQSCRRLR RLSLSGKLTD QVFLYIGMYA EKLEMLSIAF AGDSDKGMLY VLNGCKKMRK
LEIRDCPFGD LALLTDVGKY ETMRSLWMSS CEVTVGACKL LAKKMPRLNV EIFNESEQED CILEDGQRVE KMYLYRTLAG
KRKDAPEYVW TL*