GBrowse Details

Vigan.04G068400.01

Basic Information:
Name: Vigan.04G068400.01
Multiple alignment
Variant Information
Position: Chr04:6536573..6541222 (+ strand)
Length: 4650
Functional Information:
Description: Similar to Isopentenyl pyrophosphate isomerase. [Q6EJD1, Pueraria montana var. lobata]
GO: Biological Process: isoprenoid biosynthetic process (GO:0008299)
Molecular Function: isopentenyl-diphosphate delta-isomerase activity (GO:0004452)
Molecular Function: hydrolase activity (GO:0016787)
InterPro: NUDIX hydrolase domain (IPR000086)
Isopentenyl-diphosphate delta-isomerase, type 1 (IPR011876)
NUDIX hydrolase domain-like (IPR015797)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:57.48,35.35,134.00,94.18,103.08,116.12,115.87,59.36
Arabidopsis thaliana homolog: AT3G02780.1
Automatic updates:
Name: NM_001255206 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max isopentenyl-diphosphate Delta-isomerase II-like (LOC100789313), mRNA.
PubMed ID: 30786857 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:6536573..6536716 (+ strand)
Length: 144
Type: five_prime_UTR
Position: Chr04:6536717..6536982 (+ strand)
Length: 266
Type: CDS
Position: Chr04:6538181..6538236 (+ strand)
Length: 56
Type: CDS
Position: Chr04:6539130..6539221 (+ strand)
Length: 92
Type: CDS
Position: Chr04:6539859..6539961 (+ strand)
Length: 103
Type: CDS
Position: Chr04:6540060..6540197 (+ strand)
Length: 138
Type: CDS
Position: Chr04:6540465..6540718 (+ strand)
Length: 254
Type: CDS
Position: Chr04:6540719..6541222 (+ strand)
Length: 504
Type: three_prime_UTR

>Vigan.04G068400.01 class=Sequence position=Chr04:6536573..6541222 (+ strand)
GGAGAACAAG AATAGTTTAA TGCGAATTAT TTGACCATTG AATATATTAA TTTCTATAAA TATGTGGCAT GAACATATGA
AGTGATGTAA TTAGTAAAAG TTTGTGGTGC GGTGCGTTTA AGGAAGAAAT CGAAAATCGG AAAAATGGCA CAATCATCGA
TCGGTTTTAC TCTGAGCCAG AACCTGTTTA AAAGGAACGT TGCAGCAAGC GTGATTACTC ACACTCCTTC CATTTTCAGA
GGATATCGTT CTCTTCCTTC TTTCTCTTTC TCTCAGAGGA GAAGAAGACA CCACACACCT CTCTCTCTCT CCGCCTCCTT
CTCCTCAACA ACCGCCATGG GTGAAACTCC CGCCACCACC GCCGATGCCG GCATGGACGC CGTCCAGCGC CGCCTTATGT
TTGAAGACGA GTCCGTTCCT CTCTTTTAAT TCTGTTTTTT CAGTACTTCT GTGATTGTGT TATTCGTTGA TTGGTTGATT
GATCTGTGAT CTGGTTGTCG AGAACGGAAT GCGGTTTTCT TGGCCACCTG TTTTGTTTGT TTGTTTGATT GGGCGGCGTT
AGTGTGCAAT TGGACTGTTG GTGTGTGTTG CGGCGCTTTG ATTTCTTTAG TTTCGCCAAC GTTGACTGGA ACGATTTTCT
GAAATTTCCC AGCTTTTCCT TTGTTACTGT TTCACGTGGC GAGGTGTGTG CTTTGAAAAT ATAAAAGGCG TGCTCAACCG
TAGCATAACA TAAATTATTA ATATCTTGAA TTTTCGAACA ACAGCTGTTT GTGCGTACGA GTCTCCAACA GAGAGTCACC
GGTGGCTGCT TTTTTTTTTT TTTTTTTTCT GTCACAGGAT TGATTTACTA CTTCAGTGTC TATTATTTTT CATCTCATTT
CAAGGAGATG AGTGAGGACT GAAACCTGCA ACTTGTCATA TGCATGACCT TGTCTTACTC CACTCGACCA ATCCCTTGGG
TCTGTTAAGG GTCTTTTTCA AATGAAGTTT CGCGATAAAA AACAGAAGGG GATGAGGTGG AATCAATATG ACCGTGCAGG
TATAGCTGAG TCACCCTCAA CGTGAGGTGC TAACCCGGTG ACTGGCCTTA GCACTTCAGG TGTGCCTTTC ACTGTAGTCG
TCTTGCAACT GATGGCTAGG AAAAATATGT GCATCAGTTC CTGTTAAATT ATTGATTTCG AAGATGAATT AGGTTAACTC
AGAGCGATTA GGATATTTCT AACCCAACTT TTGGGTTTTC TTCTATTGTT CTTAGAATCC CTTCGGTACA GGTTATGCCT
CTGTCATTCA GAATCATGAA TGGTTTAGGA TGAACTGCTA TTTCATAGCC TGGGTTTTTT CTAATATGTC CATTTAAAAT
TTCCGGTCCA TTGAATCTGT TTCTCAATTT CATAGGCTAC TTTTGAAGGT TAGAGCATAG ATTTGAGCAA TTGAGCTTTT
GAATATCTGG TGCTTCTGTA ATGGGAAGTG ACTTTACTTT CTTGAGACTT GTCTACATTC TTTTAACGGA TAAGGCTTTA
AAATTCTTTG AAGCGAGTGT TCTTGTGTTA TTATTATTAT TTGTCTCGCC TCGAATTTGT AATTGTTTTG GGTTTGGAAC
TTCTGCAGAT GCATTTTGGT GGATGAGAAT GACCGCGTGG TTGGTCACGA TTCCAAATAC AATTGTAAGT GGACTTTTGA
TTCTTAGTTT TCAATTGCAA TCGCTCACAT CGCTTAGTGT AAATAAAAGT TGTTTTGTAT ATTCTTTTAC TTCAATAGCT
TATAATTTGT GTTTTCTGAA AATGATTGTT TTTTCTGATT TGTGTGCTTG TAAACTCTGG GATGTACTAT CATTAAATTT
TCTAGACAGA TTCTCTGATA TGAAGATTTG AGAAAAAAAA ATTAATATTG CGGTTCATCT AGAAATATTT TGATGTACAT
GTTTGGAAAC GTCTTCCTGT GATTAAAAGG AGTAAAATCT AAATCTTAAA TATACTCTCT AATTTGGTTT GTGATGATTA
TGTTTTATCA GTTATTGTTT TGGATTGAAT TAAAAGCTGT GCAGTAATTT TGTTTTCAGT TCTCTGGCAT GCACACACAT
ACGAAAGCAT GTCAAGCGAG GGCATGCTCT AGTGAGAGAG ATTTATCCTG ACCAATATTA TACACACATG GCTAGGATGG
GCTTCTCTCA TGATAGGCAC CCTACATGTA ATAAACGGTC ATTAATGAGA AATTTGATAA CATTTGTAAT TTATAATGTA
CTAGAGAACC TAGCTGTTAC TTTAATGCAA ACAAACTCCT GAATACCAAT GAGGCAAGCC TTTAAAGAGC TACAAATTGT
TTTTTTTTTT GCATCATACA TTGATAGTAG ATTTTGATCA ACGTGATCAG TAGACAACTG AAATGAAATA TAAATTTTCA
CTGCTTCTAC GGATTTTGTC TTCCTAAAGA AATAGTCCTC GAGACTTTTT GAACATCTTT TTTAGACATA TAGTTTTCTT
TTTCTGTTTT TGTGTTTCTC CTCTCTGCCT AAAGATCTGG TTAATTTATT CTTTTGAGCT TCAATGATTT TCATTAGGTC
ACTTGATGGA GAAGATTGAG GCTGAAAATT TGCTGCATAG AGCTTTCAGT GTATTTCTGT TCAACTCAAA GTATGAGCTG
CTGCTCCAGG TATGTTTATT ATTGATGTTT TTCTTGCCTC ATAAGCTTGT AGTTACATCT TGTTTAAACT AAACCTATTG
ATTTCAAAAG TATAAAGCAG AATTTGAACC ACATTTTGTT ATGTCATATC TCTGCTGCTG TCGATAAAAT TTGTTTTTAT
GTACTGTTTA TCAGGTGTAT TTATATTTGT AGTTGTTGTT TCAGTGTATT GTGCATACTG ATTAGAATGC TTTACATCTG
CATGCAAATC ACGAGGTGGG CCAAATACCT AGTGGTCCTC AATATATGAA AGGGAAATGA CCTTTTGCTG TTAACTACTT
AAATGTCACT CTTTGCAATT AATTTTGAGC ATAAGGAAAA TCAATAAAAT TCCAAGTCTT CAAGGTCATT CACTGAAGTA
ACAAAACAAT GTTACAGTAG TAACATTCAT TTTCTTACCG GTTATATTTG TTCTTATTTC TAATTTGATA ACACCTTCAT
CATGACTTGT ACATTGAACG ATTTATTGTG AGCAACATTG TAACATTTAA TTGCCTCTTG TTTAAATTAT TATTGTTACA
AAATCTATGT AGTATGTGTT TTAAAGTCGT AGATTCATGA TTTAATTCGT TGTGTTGACT GAGATTCTCT GCTCTTCATG
ATGAAGCAAC GATCTGCAAC CAAGGTAACA TTCCCTCTTG TGTGGACAAA CACCTGTTGC AGCCATCCAC TGTACCGTGA
ATCTGAGCTG ATTGAAGAGA ATGCCCTTGG TATACACTAA GTACCTTTTA TATTCATCCA AACGACCGGA CAAATCTACC
GTGTCATTGC TCCTTTTTAT TTACGTTTTT CCATTTTGTG TTGCCAGGAG TAAGAAATGC AGCTCAGAGG AAGCTTTTGG
ATGAGCTCGG TATTCCTGCT GAAGATGTAC CAGTTGATCA GTTCACCTCA CTGGGTCGCA TACTTTACAA GGCACCTTCT
GATGGCAAAT GGGGAGAGCA TGAACGTAAG CCAATTTAAT TGTTTTCAAT TTTTTCAGCA AGCCGATTTT GTCGTATAAC
TAATTAGGGT TAATTAACAA TAATTTAGGC AATGCAATCA TAAATCTAAA CATGCACCAT TAATAGCTGT CAGTGCCATT
TGGGGCATAC GTTTTATTCC AGCTGAAAAG GTCCTAATCT GCCGATATTT GCTGCAAATT CTAACTGTGC GTATGTATGC
GCAAGGAATG TTAAGTATTG ACAACTTTTC TTGATCCTCT CCTTGATTTC AGTGGACTAT CTGCTTTTTA TTGTCCGTGA
TGTTAACGTG AATCCCAATC CTGATGAAGT GGCTGATATC AAGTATGTGA ACCGCGATCA GTTGAAGGAG CTGTTGAGGA
AAGCCGATGC AGGAGAAGAA GGTCTGAAGC TGTCTCCATG GTTCAGACTA GTTGTGGACA ATTTCTTATT CAAATGGTGG
GACCATCTCG AGCAAGGAAC TCTCGGTGAG ATCATTGACA TGAAGACCAT TCACAAATTG ACATAAAATC CAGAGAGGAG
CTTGCTGCAT CATGTAATGA AGGGTACCTG TATTCCCCAA CCAATAAGAG TCAAAATAAT AACCTATTTT CTAGAGAATT
TCGGAGCAGT ACCCCAATAG AAGTTGTTAG TCTTTTTTCT TATTTTCAAT GATAGCCGGA ACATTAAACT ATAAGAATTT
TTTGTTGCAT ATTTCGGATT TTGGGGTGCA GTGAAACACT CTGAATAAGT AAGATGGTTA GTGATATGAA TCAAACATTA
TCGTGGTGTC GGTCGGCGTT TGTTAGTGGA TATTTTGTTT ACATTTTAAA CGTTTCAATG ATTAACGATC GTATCTCTCC
AAAACTGAGG ATCGGAAAAT CCCACTATGA CGTGTGGTGC TACAGAAACA CGGATCCAGA TTGCGATTCT CCGTTCACAG
CGAAGCATGA GTTGCACTGC ACTTCTACTT ATATATGCAT TAATACATTA GTTTTAACTT ATGTAAAAAA ACTTCATCTG
TTCATCTCCA 

>Vigan.04G068400.01
GGAGAACAAG AATAGTTTAA TGCGAATTAT TTGACCATTG AATATATTAA TTTCTATAAA TATGTGGCAT GAACATATGA
AGTGATGTAA TTAGTAAAAG TTTGTGGTGC GGTGCGTTTA AGGAAGAAAT CGAAAATCGG AAAAATGGCA CAATCATCGA
TCGGTTTTAC TCTGAGCCAG AACCTGTTTA AAAGGAACGT TGCAGCAAGC GTGATTACTC ACACTCCTTC CATTTTCAGA
GGATATCGTT CTCTTCCTTC TTTCTCTTTC TCTCAGAGGA GAAGAAGACA CCACACACCT CTCTCTCTCT CCGCCTCCTT
CTCCTCAACA ACCGCCATGG GTGAAACTCC CGCCACCACC GCCGATGCCG GCATGGACGC CGTCCAGCGC CGCCTTATGT
TTGAAGACGA ATGCATTTTG GTGGATGAGA ATGACCGCGT GGTTGGTCAC GATTCCAAAT ACAATTGTCA CTTGATGGAG
AAGATTGAGG CTGAAAATTT GCTGCATAGA GCTTTCAGTG TATTTCTGTT CAACTCAAAG TATGAGCTGC TGCTCCAGCA
ACGATCTGCA ACCAAGGTAA CATTCCCTCT TGTGTGGACA AACACCTGTT GCAGCCATCC ACTGTACCGT GAATCTGAGC
TGATTGAAGA GAATGCCCTT GGAGTAAGAA ATGCAGCTCA GAGGAAGCTT TTGGATGAGC TCGGTATTCC TGCTGAAGAT
GTACCAGTTG ATCAGTTCAC CTCACTGGGT CGCATACTTT ACAAGGCACC TTCTGATGGC AAATGGGGAG AGCATGAACT
GGACTATCTG CTTTTTATTG TCCGTGATGT TAACGTGAAT CCCAATCCTG ATGAAGTGGC TGATATCAAG TATGTGAACC
GCGATCAGTT GAAGGAGCTG TTGAGGAAAG CCGATGCAGG AGAAGAAGGT CTGAAGCTGT CTCCATGGTT CAGACTAGTT
GTGGACAATT TCTTATTCAA ATGGTGGGAC CATCTCGAGC AAGGAACTCT CGGTGAGATC ATTGACATGA AGACCATTCA
CAAATTGACA TAAAATCCAG AGAGGAGCTT GCTGCATCAT GTAATGAAGG GTACCTGTAT TCCCCAACCA ATAAGAGTCA
AAATAATAAC CTATTTTCTA GAGAATTTCG GAGCAGTACC CCAATAGAAG TTGTTAGTCT TTTTTCTTAT TTTCAATGAT
AGCCGGAACA TTAAACTATA AGAATTTTTT GTTGCATATT TCGGATTTTG GGGTGCAGTG AAACACTCTG AATAAGTAAG
ATGGTTAGTG ATATGAATCA AACATTATCG TGGTGTCGGT CGGCGTTTGT TAGTGGATAT TTTGTTTACA TTTTAAACGT
TTCAATGATT AACGATCGTA TCTCTCCAAA ACTGAGGATC GGAAAATCCC ACTATGACGT GTGGTGCTAC AGAAACACGG
ATCCAGATTG CGATTCTCCG TTCACAGCGA AGCATGAGTT GCACTGCACT TCTACTTATA TATGCATTAA TACATTAGTT
TTAACTTATG TAAAAAAACT TCATCTGTTC ATCTCCA

>Vigan.04G068400.01
ATGGCACAAT CATCGATCGG TTTTACTCTG AGCCAGAACC TGTTTAAAAG GAACGTTGCA GCAAGCGTGA TTACTCACAC
TCCTTCCATT TTCAGAGGAT ATCGTTCTCT TCCTTCTTTC TCTTTCTCTC AGAGGAGAAG AAGACACCAC ACACCTCTCT
CTCTCTCCGC CTCCTTCTCC TCAACAACCG CCATGGGTGA AACTCCCGCC ACCACCGCCG ATGCCGGCAT GGACGCCGTC
CAGCGCCGCC TTATGTTTGA AGACGAATGC ATTTTGGTGG ATGAGAATGA CCGCGTGGTT GGTCACGATT CCAAATACAA
TTGTCACTTG ATGGAGAAGA TTGAGGCTGA AAATTTGCTG CATAGAGCTT TCAGTGTATT TCTGTTCAAC TCAAAGTATG
AGCTGCTGCT CCAGCAACGA TCTGCAACCA AGGTAACATT CCCTCTTGTG TGGACAAACA CCTGTTGCAG CCATCCACTG
TACCGTGAAT CTGAGCTGAT TGAAGAGAAT GCCCTTGGAG TAAGAAATGC AGCTCAGAGG AAGCTTTTGG ATGAGCTCGG
TATTCCTGCT GAAGATGTAC CAGTTGATCA GTTCACCTCA CTGGGTCGCA TACTTTACAA GGCACCTTCT GATGGCAAAT
GGGGAGAGCA TGAACTGGAC TATCTGCTTT TTATTGTCCG TGATGTTAAC GTGAATCCCA ATCCTGATGA AGTGGCTGAT
ATCAAGTATG TGAACCGCGA TCAGTTGAAG GAGCTGTTGA GGAAAGCCGA TGCAGGAGAA GAAGGTCTGA AGCTGTCTCC
ATGGTTCAGA CTAGTTGTGG ACAATTTCTT ATTCAAATGG TGGGACCATC TCGAGCAAGG AACTCTCGGT GAGATCATTG
ACATGAAGAC CATTCACAAA TTGACATAA

>Vigan.04G068400.01
MAQSSIGFTL SQNLFKRNVA ASVITHTPSI FRGYRSLPSF SFSQRRRRHH TPLSLSASFS STTAMGETPA TTADAGMDAV
QRRLMFEDEC ILVDENDRVV GHDSKYNCHL MEKIEAENLL HRAFSVFLFN SKYELLLQQR SATKVTFPLV WTNTCCSHPL
YRESELIEEN ALGVRNAAQR KLLDELGIPA EDVPVDQFTS LGRILYKAPS DGKWGEHELD YLLFIVRDVN VNPNPDEVAD
IKYVNRDQLK ELLRKADAGE EGLKLSPWFR LVVDNFLFKW WDHLEQGTLG EIIDMKTIHK LT*