GBrowse Details

Vigan.04G067400.01

Basic Information:
Name: Vigan.04G067400.01
Multiple alignment
Variant Information
Position: Chr04:6424818..6428225 (- strand)
Length: 3408
Functional Information:
Description: Similar to Uncharacterized protein. [B7FGW0, Medicago truncatula]
GO: Biological Process: glycerol ether metabolic process (GO:0006662)
Biological Process: cell redox homeostasis (GO:0045454)
Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro: Thioredoxin (IPR005746)
Thioredoxin-like fold (IPR012336)
Thioredoxin domain (IPR013766)
Thioredoxin, conserved site (IPR017937)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.78,1.75,104.35,681.42,3.35,83.38,4.46,128.21
Arabidopsis thaliana homolog: AT5G16400.1
Automatic updates:
Name: NM_001248943 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499776 (LOC100499776), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249741 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306555 (LOC100306555), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:6424818..6425002 (- strand)
Length: 185
Type: three_prime_UTR
Position: Chr04:6425003..6425137 (- strand)
Length: 135
Type: CDS
Position: Chr04:6425531..6425630 (- strand)
Length: 100
Type: CDS
Position: Chr04:6427335..6427645 (- strand)
Length: 311
Type: CDS
Position: Chr04:6427646..6428225 (- strand)
Length: 580
Type: five_prime_UTR

>Vigan.04G067400.01 class=Sequence position=Chr04:6424818..6428225 (- strand)
AGGCTTAATC CTCAACAGTG TAACTAGGGA TTGCTTCCAA ATGCTAACGC TTTACCAGGG ATGAATGATC TCACAAGTTT
GTTCATTGTT CAGCAGCTTC TTCTCTCAAT GCCATCGATT CCTCCTCTTT TCAGTGTTCG TCAAATCTCC ATGCAAAGGT
CTAATTTGTT CCTCTTTCTT TTTCCCATGT CTTCATCACA GTTTCAATTG CATCAGAAAT TTCAACATAA CGCCTTTATT
TTTATGTGGA GATCAAAGAT TTTATGATCA TTTATGTGGA GAAGAAGAGC TCCAAAATGC AGAATCAAAG ACGTTTTTGT
TTTTTCTCGA ATCCAAAAAA TCAGACAAGG GTACTTTGGT AATAACAAAA AAACTAGACG TGCTTGTTTG TTCCACCATC
ACTGTGTCTG CTAATTTCAA TTTACCAAAA CCACCCTCAT CCTGAGATAG CAACAATATC ATACACAAAT CACAAGGGCA
ATCATGTCTT TTCCTGTTGC ACCTCCTCCC CTCCACATGC ATTTGCTATA TGTGAGATGA GTTCTTTCCC CTTTGCCATT
GGAACTCCCA GCAACCACCA ATGGCTCTGA ATGTTTGTGT TTCTCCAAAC CCTAAATGGG TTGCATCTCC TTCCTTAGAT
AGTGGTTCTT CTTTGAGACC TTCACTTGGG TCTTGTTTTG GTAACCTAAA CATTCCTAGT GTGAATCTCA ACTTGAGTAC
TAGAACCACA AGTTTGAGTT TGAGAAGAAG TTTTAGTGTA AGATCTAGTT TGGAAACTGC AGGGCCCACA GTCACAGTAG
GACAAGTCAC CGAGGTAAAC AAGGACACCT TCTGGCCGAT TGTTAAGGCT GCCGGGGATA AAACCGTTGT CCTAGACATG
TACACCCAAT GGTATGTTAA TTTTCCTTTG TTAATTATGT ATAGCTGTAT CATGTGATAT ATACTGTTAT ACCTTATAAC
CACGTGCTTG TCTTTTTAAG AATATTGTTA TATTGTATAG TGGATTGGAT TGGAATTGAA GAAAGAATCA TACTTTACTT
TTCTTGTGAA GCTGCATGTG CTGGCTCTCT TAGCTGGGGG ATTCCTTGGT AAACACTGTT ATGGTTAGCT TTATTAGTAT
TTTGTCAAGA TCCGAGATCA TCGTTGGTAT CACCTAACAA TTAGTGATTT GGATGAAAAG GTGAAAAGAG GAATGAAAAT
CACTTTGTTG TATACACTGG CTTGGTACAA ACCAAAATGT GAGATATAAT TTGGAAATTG GAATGGCATT CATTTGCCCT
TGCCTCATCC CCTCTTTTGC TTTAAAGTGA ATTTCCCGCT CTACCGAGAA TGAAAAATCC TATCATGTGT GATTCGAGCA
ATCTTAGTTT TTAACATAGT TTCACTCATA ACAGGTGCTG AATTGTACAG CTCGGAAGTC GTAAGACAAA TAAAAGTTTA
GTTAATATCA CAGTTTGCAT ATGTTTTGTG TGACTTGATT AGTGTTTTAT ATAATTCTTG TTAAAATTAT TGGTCTATAA
GCTCATTCTC TCTGCTGGCT TTTAATTATT TTCCTGCCTT CAGAATTGTG CATAAGCTGG CGTTTTTTGA CCAGCATTGT
CCATAATCAA TTGCAGATCA GGCTTAGATT CCCTCATAAT TTATCTTTGA GCAATTTGCA CAGTATTGTA TTTACCTTAG
TGGGGATGGT TCAAGATGAA CCTCAACCAA GGTAACACCC CGTAAACAAA AAGTTCATCA TATGATTGGG TTTGATGTGA
GAGAAATTGG ATTTGTTTCA TAAGGTGAGG CTTCATTTTA GATGGAAAAG TTAGATGCTA TGACCAAGAA AATGAAGATA
AATAAGTTTA AAGAACTGAA TATTTATTAT AAATGTGTAT GCAACTTATC ACACTATTTA TTAGTTGATT TAACTATCAA
TAGTTATAAC TTTTTGCTTT TGCCAACTTA TCACAATATT TAATGTCGAT GCTTTCCGCT CTGACATTGG TGGGAAGCTT
CTAAGTTGGC TTTTGACCAA CAATTATGTG TCAAACCTTT TAGGATCTAT GTGCTTTGCA AAGGCCTATA CATGTGTTGC
AGTGTGAAGC TGTATCAGCT TTTGGTATAT GAAACAAAGG GTTCCAAATC TGGTCGCTTG TATTAAATCA CTGTCAAGTC
GCTTTGCCTG ATTTAGTTGT ATAATGGGTG TAATTTTTTT TTATCTCCAC CATGTGTACA AGAATGAATT GTACATGAAG
TTTCATAGTG ATGTTGTTTG ACCTAAACAG TGATCAGCTT CAGAACAAGT TTCTTTGGTA ATGATAAACT GGTTGGGTTA
CAACGTAACT AAAAGCAGAG CTAATTCTAA AAGTTAACTT CAAAAATCTG GTTAATTTGT TATTGTTATT CTCTGGTACG
GTACTGCAGA AATGTTTGTT TTGAGAGTCT TTATTTCATT TTTACCATGT TGAAGGTGGG AAGTATTCGG CTTTGTCAAT
AACAACTCAT CTTGAAAGTC TGGATATGGT TGATCCTTTT ATGACATTGT TACCCTTGCT TGTTGCCAAC TGAAAATTTG
GATAACCTTT GATATAAATT TATGAATTTT TTCAGGTGTG GCCCTTGCAA AGTGATGGCT CCAAAGTTTC AAGAATTATC
TAAGAAGTAT GAGGATGTTG TCTTTCTAAA GCTTGATTGC AACCAAGACA ACAGGGTATG GATGAAGTGT GCAAGATAGT
ATATAGTTTT TCAATTTATG GTTGAACATA TAGTTTAGTC CTTTGGTCCC TACTATCTTT AATTTGACCG TTATATTTAT
AGTGCATTCT TACTTAAATC CTTATTTATA GGGATTAAAC AATATATAAC CAAATTAAGA ATGCATTACA TGTATAGGAC
TAAACTAAGA ATGTGTAAAA ATGTTAACTA TTGGTCAACC ACTATATTCA CCAATTCAAA AATATTTACT TATAGGAATC
CATTTAAGAA CCGTGACACG TAGGGATGAG ATCAAAGTTC ATGTTTATCC TCAATTTATA TGTGAACATG TTTTCTAAAT
CATAGGGTTA ACCAAACGTG GTATGATTTG TTTGATGGTT CTTGACAGCC ATTGGCAAAA GAGCTGGGGA TTAAAGTGGT
TCCCACTTTT AAAATTCTGA AGGACAACAA GGTTGTAAAA GAAGTTACTG GAGCTAAATA CGATGATTTG ATTGCTGCCA
TTGACAATGT TCGATTGAGC TAAGAATATA AGTATTCTCT TTCCATGTAA AAATATTATG CTTGACACCC TCTGTAAGTA
TTCTATGCAA TTGTAAGATG ATGAGGATTG GAAGATGAAG AAATGGTTTC ATGTGATTGT TGTAAGCTAA TTGTTTATTC
CCTAAAGGAA GAGTTACTCG ATTATCCAAG TTATCAACTT GATCATGG

>Vigan.04G067400.01
AGGCTTAATC CTCAACAGTG TAACTAGGGA TTGCTTCCAA ATGCTAACGC TTTACCAGGG ATGAATGATC TCACAAGTTT
GTTCATTGTT CAGCAGCTTC TTCTCTCAAT GCCATCGATT CCTCCTCTTT TCAGTGTTCG TCAAATCTCC ATGCAAAGGT
CTAATTTGTT CCTCTTTCTT TTTCCCATGT CTTCATCACA GTTTCAATTG CATCAGAAAT TTCAACATAA CGCCTTTATT
TTTATGTGGA GATCAAAGAT TTTATGATCA TTTATGTGGA GAAGAAGAGC TCCAAAATGC AGAATCAAAG ACGTTTTTGT
TTTTTCTCGA ATCCAAAAAA TCAGACAAGG GTACTTTGGT AATAACAAAA AAACTAGACG TGCTTGTTTG TTCCACCATC
ACTGTGTCTG CTAATTTCAA TTTACCAAAA CCACCCTCAT CCTGAGATAG CAACAATATC ATACACAAAT CACAAGGGCA
ATCATGTCTT TTCCTGTTGC ACCTCCTCCC CTCCACATGC ATTTGCTATA TGTGAGATGA GTTCTTTCCC CTTTGCCATT
GGAACTCCCA GCAACCACCA ATGGCTCTGA ATGTTTGTGT TTCTCCAAAC CCTAAATGGG TTGCATCTCC TTCCTTAGAT
AGTGGTTCTT CTTTGAGACC TTCACTTGGG TCTTGTTTTG GTAACCTAAA CATTCCTAGT GTGAATCTCA ACTTGAGTAC
TAGAACCACA AGTTTGAGTT TGAGAAGAAG TTTTAGTGTA AGATCTAGTT TGGAAACTGC AGGGCCCACA GTCACAGTAG
GACAAGTCAC CGAGGTAAAC AAGGACACCT TCTGGCCGAT TGTTAAGGCT GCCGGGGATA AAACCGTTGT CCTAGACATG
TACACCCAAT GGTGTGGCCC TTGCAAAGTG ATGGCTCCAA AGTTTCAAGA ATTATCTAAG AAGTATGAGG ATGTTGTCTT
TCTAAAGCTT GATTGCAACC AAGACAACAG GCCATTGGCA AAAGAGCTGG GGATTAAAGT GGTTCCCACT TTTAAAATTC
TGAAGGACAA CAAGGTTGTA AAAGAAGTTA CTGGAGCTAA ATACGATGAT TTGATTGCTG CCATTGACAA TGTTCGATTG
AGCTAAGAAT ATAAGTATTC TCTTTCCATG TAAAAATATT ATGCTTGACA CCCTCTGTAA GTATTCTATG CAATTGTAAG
ATGATGAGGA TTGGAAGATG AAGAAATGGT TTCATGTGAT TGTTGTAAGC TAATTGTTTA TTCCCTAAAG GAAGAGTTAC
TCGATTATCC AAGTTATCAA CTTGATCATG G

>Vigan.04G067400.01
ATGGCTCTGA ATGTTTGTGT TTCTCCAAAC CCTAAATGGG TTGCATCTCC TTCCTTAGAT AGTGGTTCTT CTTTGAGACC
TTCACTTGGG TCTTGTTTTG GTAACCTAAA CATTCCTAGT GTGAATCTCA ACTTGAGTAC TAGAACCACA AGTTTGAGTT
TGAGAAGAAG TTTTAGTGTA AGATCTAGTT TGGAAACTGC AGGGCCCACA GTCACAGTAG GACAAGTCAC CGAGGTAAAC
AAGGACACCT TCTGGCCGAT TGTTAAGGCT GCCGGGGATA AAACCGTTGT CCTAGACATG TACACCCAAT GGTGTGGCCC
TTGCAAAGTG ATGGCTCCAA AGTTTCAAGA ATTATCTAAG AAGTATGAGG ATGTTGTCTT TCTAAAGCTT GATTGCAACC
AAGACAACAG GCCATTGGCA AAAGAGCTGG GGATTAAAGT GGTTCCCACT TTTAAAATTC TGAAGGACAA CAAGGTTGTA
AAAGAAGTTA CTGGAGCTAA ATACGATGAT TTGATTGCTG CCATTGACAA TGTTCGATTG AGCTAA

>Vigan.04G067400.01
MALNVCVSPN PKWVASPSLD SGSSLRPSLG SCFGNLNIPS VNLNLSTRTT SLSLRRSFSV RSSLETAGPT VTVGQVTEVN
KDTFWPIVKA AGDKTVVLDM YTQWCGPCKV MAPKFQELSK KYEDVVFLKL DCNQDNRPLA KELGIKVVPT FKILKDNKVV
KEVTGAKYDD LIAAIDNVRL S*