GBrowse Details

Vigan.04G027200.01

Basic Information:
Name: Vigan.04G027200.01
Multiple alignment
Variant Information
Position: Chr04:2377102..2380226 (+ strand)
Length: 3125
Functional Information:
Description: Similar to Uncharacterized protein. [I1N4V4, Glycine max]
InterPro: Hrf1 (IPR005578)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:17.42,9.80,8.32,6.42,10.57,14.34,11.11,7.32
Automatic updates:
Name: NM_001377333 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein YIF1B-like (LOC100801486), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:2377102..2377770 (+ strand)
Length: 669
Type: five_prime_UTR
Position: Chr04:2377771..2377953 (+ strand)
Length: 183
Type: CDS
Position: Chr04:2378554..2378652 (+ strand)
Length: 99
Type: CDS
Position: Chr04:2378760..2378911 (+ strand)
Length: 152
Type: CDS
Position: Chr04:2379460..2379847 (+ strand)
Length: 388
Type: CDS
Position: Chr04:2379848..2380226 (+ strand)
Length: 379
Type: three_prime_UTR

>Vigan.04G027200.01 class=Sequence position=Chr04:2377102..2380226 (+ strand)
TCCCTTTTTT TATTTTTCAA ACCGGTATTA CTAATCCCCA TTTTCTCTAT CTTATGTGTG TTTGTGTATT TTTACTGAAG
CAACTTGAAG TTCATGTTGT TCTTTCTTAA ACCCCCCACG GAGCATTGTG ATAATAAAAT AGATAAAAAT TGGTATCAAC
AAATTAGGAA CTTGGATAGG TCGGGAGAGT GAGTTTACGG TTACCCCCAT GTTTTAGCAG GCTGTCATCT TTACATCTGA
ACTGGAATGG ATATTGGCAT CTCTTTGGCT TGTTATGTTT TAGTTGGATG ATTTATTCAT GTCATAAGAC GTTGTTTGTT
TGTTTTTTTT TTTTTTACTT ATTTGATTTA GTACATCAAG TGGTTATACA TGTCGTACTT TTTAGGTGGC TCTGGTTATG
TGGTTGGGTT TAACTTCAAT CCCCACATTC CCATTTTTTC CTTTCACCTT AGGTCCAATC ATGGTTTTAA GTTGCGGTTG
TGATTGCAGT GTCATGACAT TCTGCGATTG TGGCCAATGT AACCATAATT GAAGCTGGAG AGTCTAAAAA TATTGTTGAA
GTGGCTGTTA TGGCAGCTGT AGTTTTTTTT TTCTTAAATC TCCATAGAAC CTAGAAAAAA GTTATTTCTA AGTTCTGATT
GATTGTATGC TTTTTTATGT GCAGTAAGAA TGTATAATAA TGTTGGGATG CCACCGGGGG GGCCTCAACT GCATCCTCAA
CCTCCTACGA GCTCACAACC TAATTTGTTT GGGAATGCAT TTAATGCTGC TGGATCAGGA CTCATTCGAG GTGGATTGGG
TGCTTATGGA GAAAAAATAT TAGGATCAAG TTCTGAGTAC GTCCAAAGCA ATGTATGTAT CGTCCTTTTA TCATTCTTTT
TATTGAATCA TGTAATTTGA CATGCTAATT CTTGGTTCAC AAAATTATAT CTGATTTCTT GTTTGTCTCT CATTTTAGCT
TTTTGTATGT TTAGTTTCTT TCTTGTTTTG CATCTTCTTC CTTGCATCCA AATTGTGTGT GGAAAACTGC TTTTTCTTAG
AAAAAATATA TACCTATTGA GGACCGTGTT TCTAAGGTGT TTGGTATATC ATTTGAGCAA TGCTTATCTG CTGATCAGAA
ACAATGCTTG CCTGTTGATG ATCAAAAACA ATTATACCAT ACAACTTAGC ATCTTAATAT TTTGCATTTA CTTTTTAATC
CTTTTATAGT AAATTTAAAT GTTGTGCATT ATTGCAATTC ACTTTTGAAT CTATTTCATA TATGGCAAAT GCTGTCACTT
CAACAATGCT TACATTTAAA TTAAGTCAGG TTCCTTTGAT TTTGGAGAAA AAACCAATGC AGCTGAGATA ATTTTTGTAT
CTTTAGTTAG CATGTTAACT TAATTATAGA TATTATATGG AGTTGTGGAT TCAAAGTATT TTTTTGAAAT ATTTTTATCT
GCTCAACTAC AGATAAGCCG GTATTTCTCT GATCCCCAAT ACTACTTTCA AGTGAATGAT CACTATGTTA AGAACAAATT
AAAGGTTATT TTGTTCCCAT TCCTGCACCG GGTACGCAGC AATAATGTCA CCTTTTTTCA AATTTTTCTA GTTGTATTTT
CAATTCATTA TCTTATTCTA TCTTCTCGCT TGCCCTTGTC TCTTTTTCTT GTGTTCAGGG TCATTGGACT AGAATTACTG
AACCCGTGGG AGGTAGGCTA TCCTATAAAC CACCAATCTA TGACATAAAT GCTCCAGACT TGTACATTCC ATTAATGGCA
TTTGGTACCT ACGTTGTTCT TGCCGGCATC TCACTTGGTT TACATGGAAA GTAAGTATAG TATCTCGTTA ATCTTAATTG
TTGAAATGAC TAGATGTATT TTTCTCAAAC TCAAATTTAG CCACCTGGTC CCCACTTGAG CTTATTTTTG CCTTTATATA
TACTATATCA CGGTTCTTTA AAAAGGATTT GTGCTTGTTT GTGGTGGTGC CTTGGGAAAT ACAAAATGGT TACTTACCTT
ATGCAATAAA AAAAGGATAC TGTATATTAT CAGAGTTGAA CAGTGGCACC TCCCTTTTTG ACTAGGTGTA ATAATGAGTC
TCTTTCCTTA AAGAAATTCA AGTCCAAAAG TTATCTTTAT TCTTCTGTTC CAAACTAAAA CATATAAAGT GTGATTAGAA
ATCAGACAAG TAATGATCTT CTATGATATG AAGATTGCTG ATTTCATTTT CTTGACTGTT ATTTTAATAA CTCCATAGAC
GGATTTTGAA AAGTTTCACT GAAAATTTAG TTTCGTTTAT AGTGCTGAAT TTGTTCCATG TCCACATGCT TTCTAGTTTG
TCATAGTATT TTAAACATGC TGTATTTGTT GTGGGCAGGT TTAGTCCTGA AGCTTTGAAC TGGTTATTTA TCAAGGGATT
GGTTGGCTGG TTTATGCAAA CTGGATTGCT TAAAGTTGCT TTACTTTCAT TGGGCACTGG GGAAGCACCT CTATTGGACA
TTATAGCGTA TGCTGGGTAC ACTTTTACGG GCTTATGTTT GGCTGTTTGT GGAAGAATGA TATGGAGTTA CTCCTACTAC
TTTCTGATGC TGTCGACCTG CTTATGTATG GCGGTGTTCT TGGTTAAAAC AATGAAGAGA GTCCTTTTCG CTGAAGTCAG
GAGTTATGAC TCAAGCAAGC ACCACTATCT CTTACTCTTC ATTGCTTTGG CTCAGTTCCC ATTATTCACA TGGCTTGGAA
ACATTACTGT CAATTGGCTA ATATAGTGAT AGCATTTACA CTGTTCTTAA GAGTTAGAAG TCCCTGGTAA TTCTTTTGGT
TGTTAACTTT GGAGAATTGT AATATAAGGC TCTTTTCTCT CTTTGTTGTA TGTCAAAGAT GCGAAATCGT AGCATTCTCC
TTCATCAGAT GTATTATATT ATAGGATTTT TCGTACTTAA TTTTCCTTAC AGACTTTTTA CCCTGGCTCA CATTAAGTTG
GGTTGTCTTT GGGGGTCACT TTCTCGATAA TGGTTCTCTC GGTCACAGAT TCACAGAAAT TGTTTGTTTG AAGTTTTGCA
TGACTATTTT TAATCTGTAT TCTAATAGTG AAAGAACTGT GAGAGTTGAA AATGTTGTCT ATATATTTTA GTAGATTACA
TGATT

>Vigan.04G027200.01
TCCCTTTTTT TATTTTTCAA ACCGGTATTA CTAATCCCCA TTTTCTCTAT CTTATGTGTG TTTGTGTATT TTTACTGAAG
CAACTTGAAG TTCATGTTGT TCTTTCTTAA ACCCCCCACG GAGCATTGTG ATAATAAAAT AGATAAAAAT TGGTATCAAC
AAATTAGGAA CTTGGATAGG TCGGGAGAGT GAGTTTACGG TTACCCCCAT GTTTTAGCAG GCTGTCATCT TTACATCTGA
ACTGGAATGG ATATTGGCAT CTCTTTGGCT TGTTATGTTT TAGTTGGATG ATTTATTCAT GTCATAAGAC GTTGTTTGTT
TGTTTTTTTT TTTTTTACTT ATTTGATTTA GTACATCAAG TGGTTATACA TGTCGTACTT TTTAGGTGGC TCTGGTTATG
TGGTTGGGTT TAACTTCAAT CCCCACATTC CCATTTTTTC CTTTCACCTT AGGTCCAATC ATGGTTTTAA GTTGCGGTTG
TGATTGCAGT GTCATGACAT TCTGCGATTG TGGCCAATGT AACCATAATT GAAGCTGGAG AGTCTAAAAA TATTGTTGAA
GTGGCTGTTA TGGCAGCTGT AGTTTTTTTT TTCTTAAATC TCCATAGAAC CTAGAAAAAA GTTATTTCTA AGTTCTGATT
GATTGTATGC TTTTTTATGT GCAGTAAGAA TGTATAATAA TGTTGGGATG CCACCGGGGG GGCCTCAACT GCATCCTCAA
CCTCCTACGA GCTCACAACC TAATTTGTTT GGGAATGCAT TTAATGCTGC TGGATCAGGA CTCATTCGAG GTGGATTGGG
TGCTTATGGA GAAAAAATAT TAGGATCAAG TTCTGAGTAC GTCCAAAGCA ATATAAGCCG GTATTTCTCT GATCCCCAAT
ACTACTTTCA AGTGAATGAT CACTATGTTA AGAACAAATT AAAGGTTATT TTGTTCCCAT TCCTGCACCG GGGTCATTGG
ACTAGAATTA CTGAACCCGT GGGAGGTAGG CTATCCTATA AACCACCAAT CTATGACATA AATGCTCCAG ACTTGTACAT
TCCATTAATG GCATTTGGTA CCTACGTTGT TCTTGCCGGC ATCTCACTTG GTTTACATGG AAAGTTTAGT CCTGAAGCTT
TGAACTGGTT ATTTATCAAG GGATTGGTTG GCTGGTTTAT GCAAACTGGA TTGCTTAAAG TTGCTTTACT TTCATTGGGC
ACTGGGGAAG CACCTCTATT GGACATTATA GCGTATGCTG GGTACACTTT TACGGGCTTA TGTTTGGCTG TTTGTGGAAG
AATGATATGG AGTTACTCCT ACTACTTTCT GATGCTGTCG ACCTGCTTAT GTATGGCGGT GTTCTTGGTT AAAACAATGA
AGAGAGTCCT TTTCGCTGAA GTCAGGAGTT ATGACTCAAG CAAGCACCAC TATCTCTTAC TCTTCATTGC TTTGGCTCAG
TTCCCATTAT TCACATGGCT TGGAAACATT ACTGTCAATT GGCTAATATA GTGATAGCAT TTACACTGTT CTTAAGAGTT
AGAAGTCCCT GGTAATTCTT TTGGTTGTTA ACTTTGGAGA ATTGTAATAT AAGGCTCTTT TCTCTCTTTG TTGTATGTCA
AAGATGCGAA ATCGTAGCAT TCTCCTTCAT CAGATGTATT ATATTATAGG ATTTTTCGTA CTTAATTTTC CTTACAGACT
TTTTACCCTG GCTCACATTA AGTTGGGTTG TCTTTGGGGG TCACTTTCTC GATAATGGTT CTCTCGGTCA CAGATTCACA
GAAATTGTTT GTTTGAAGTT TTGCATGACT ATTTTTAATC TGTATTCTAA TAGTGAAAGA ACTGTGAGAG TTGAAAATGT
TGTCTATATA TTTTAGTAGA TTACATGATT 

>Vigan.04G027200.01
ATGTATAATA ATGTTGGGAT GCCACCGGGG GGGCCTCAAC TGCATCCTCA ACCTCCTACG AGCTCACAAC CTAATTTGTT
TGGGAATGCA TTTAATGCTG CTGGATCAGG ACTCATTCGA GGTGGATTGG GTGCTTATGG AGAAAAAATA TTAGGATCAA
GTTCTGAGTA CGTCCAAAGC AATATAAGCC GGTATTTCTC TGATCCCCAA TACTACTTTC AAGTGAATGA TCACTATGTT
AAGAACAAAT TAAAGGTTAT TTTGTTCCCA TTCCTGCACC GGGGTCATTG GACTAGAATT ACTGAACCCG TGGGAGGTAG
GCTATCCTAT AAACCACCAA TCTATGACAT AAATGCTCCA GACTTGTACA TTCCATTAAT GGCATTTGGT ACCTACGTTG
TTCTTGCCGG CATCTCACTT GGTTTACATG GAAAGTTTAG TCCTGAAGCT TTGAACTGGT TATTTATCAA GGGATTGGTT
GGCTGGTTTA TGCAAACTGG ATTGCTTAAA GTTGCTTTAC TTTCATTGGG CACTGGGGAA GCACCTCTAT TGGACATTAT
AGCGTATGCT GGGTACACTT TTACGGGCTT ATGTTTGGCT GTTTGTGGAA GAATGATATG GAGTTACTCC TACTACTTTC
TGATGCTGTC GACCTGCTTA TGTATGGCGG TGTTCTTGGT TAAAACAATG AAGAGAGTCC TTTTCGCTGA AGTCAGGAGT
TATGACTCAA GCAAGCACCA CTATCTCTTA CTCTTCATTG CTTTGGCTCA GTTCCCATTA TTCACATGGC TTGGAAACAT
TACTGTCAAT TGGCTAATAT AG

>Vigan.04G027200.01
MYNNVGMPPG GPQLHPQPPT SSQPNLFGNA FNAAGSGLIR GGLGAYGEKI LGSSSEYVQS NISRYFSDPQ YYFQVNDHYV
KNKLKVILFP FLHRGHWTRI TEPVGGRLSY KPPIYDINAP DLYIPLMAFG TYVVLAGISL GLHGKFSPEA LNWLFIKGLV
GWFMQTGLLK VALLSLGTGE APLLDIIAYA GYTFTGLCLA VCGRMIWSYS YYFLMLSTCL CMAVFLVKTM KRVLFAEVRS
YDSSKHHYLL LFIALAQFPL FTWLGNITVN WLI*