GBrowse Details

Vigan.04G018200.01

Basic Information:
Name: Vigan.04G018200.01
Multiple alignment
Variant Information
Position: Chr04:1575602..1579906 (+ strand)
Length: 4305
Functional Information:
Description: Similar to Uncharacterized protein. [I1N523, Glycine max]
GO: Biological Process: cation transport (GO:0006812)
Biological Process: transmembrane transport (GO:0055085)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: cation transmembrane transporter activity (GO:0008324)
InterPro: Cation efflux protein (IPR002524)
Cation efflux protein transmembrane domain (IPR027469)
Cation efflux protein cytoplasmic domain (IPR027470)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.74,9.52,36.88,89.81,11.54,52.64,18.72,50.71
Arabidopsis thaliana homolog: AT2G39450.1
Automatic updates:
Name: NM_001255719 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max metal tolerance protein 5-like (LOC100791229), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:1575602..1575852 (+ strand)
Length: 251
Type: five_prime_UTR
Position: Chr04:1575853..1576024 (+ strand)
Length: 172
Type: CDS
Position: Chr04:1577177..1577286 (+ strand)
Length: 110
Type: CDS
Position: Chr04:1577377..1577622 (+ strand)
Length: 246
Type: CDS
Position: Chr04:1577814..1577894 (+ strand)
Length: 81
Type: CDS
Position: Chr04:1578036..1578269 (+ strand)
Length: 234
Type: CDS
Position: Chr04:1579144..1579491 (+ strand)
Length: 348
Type: CDS
Position: Chr04:1579492..1579906 (+ strand)
Length: 415
Type: three_prime_UTR

>Vigan.04G018200.01 class=Sequence position=Chr04:1575602..1579906 (+ strand)
AATGAAACCG CAACGCGTGT CGGAAAGTGC CGAAATATGA CCTGCGTGGT ACACGCGCCT ATCGGATCTC ATGTCACAGA
CTCTCTTGTT TATTTATCAT TTTTTTTTCT CATGAATCCC ACTTTACCGG TTCGAAAATC TGCTACGGCT GTTGTTATAA
CAAGCACCAA CCACGACGAC CCTGCTTGCA TTCTTTGCTC CTTCCGGGCT GTCCAAAACG ACGGCGTTTA AGATTCTCAG
GCGACCGGGA AATGGTGGAG ACGGCGGAGC TTCACGGCGA GGAGCAGCGC TCGTTGCTCT CAGATTCGAA CAATGGGGAC
CGGTCCTGGC GGTTGAACTT CGAGGGGTTT CAGATATCTT CGGAGCACAC GGAGAAGCAA GTGAAACCCT CTCGCGGACT
CTATGACTGT TATGGCGTTC TAGGTAACAA AACAGTACAA TAGCATCTTC GTTCTGTTTA TTTATTTATT TTAATATTTT
CAATTATTGC TATTGTTCAT TTTGGAATCT GCTTTTTATT TTCTTTTAAT CTGACAGATT TTATTTCACT GTTTGTTTTG
TTCGAATAGG AATCTGCAAT TTGCTTTACG TTAGTGGTTG TGGTTAATGG TGGTTTCAGT TTTAGTGTGA TGTTTTGTTC
CATTTCATTT TTTCTCTCTG TGTGTAAAGT TTCCCCTCTT CATTGAGTCC AGATATTGTT TTTCTTTCTC GGAGATGTTA
TTATTACTGG ATTTCATTCA GTTTGACTAG AATGCTTTGT TTTTTTGTTC TCCTTTTGCC AGGTTGAGTA TTGTGTGCAG
GCATTTGGAA GCAGGCTAGT TATAGTGGGT GTGGTCTTTT TTGTGTTTTG GGTTGAGGAT GTGGTGGCTT TTTGGCTATG
TTAAATAAGT TGATGTGGAT TTTTGTTGCA TCGGGTATTG CTTGCTTCTT TGGGGCAGTT GCTGGAAGAT GGACTATAGG
GTTTTGCATT TGGAAGCTCT AGAGGGTAGA GGCATAACTT CTTTTGGACG CTGAACTACT ATTTTGTTAC TTTTTTCTTT
TTCCATTTTG GGTCTCTGTT TTTAGTGGAA GAAGTTTCAT AAAATTGATC TTGGCATTTG AACCGAGTGC CTTTGGTCTG
TTGCTTTATT TGTATAAATA AATGGGTTGT TTGGACCCTG CTTTTGTTGA AGCTTATACT TTCCCAGTTT GCAATAAGCA
TCTGCCTGTT GAGCTATGAA GCTTGTACTT TCCAAGTTTT CCAGTTTCTG AAGCTTTCTA TAAAGTTCTT GTGGCCCATA
ATATGAAGTT CATTTGTCCT ATAGTTGTGA TCGTGGAAGT TTAAAGCATA ATTGTTTCTT TGAATATGAT TTTCTTCATT
TGTGAATGAT CTTTACTTTT TTCTTCCATT TCACAAGGTA GGTTAGGGAT ATGATCTTGA GGGTCAATGT AGTTTTGAGT
TTTCTTTGTA ATTTTTATCT TTTTAATTAG CCAAGCAATG GTATGCTCTG CTTATGACAT ATTTTCTACT AAATGGAATG
GGATTTCATG GATCTTGTCT TATTTTTTTT TTCCTTCTGT TATATATTTC CTCAGGTCAA GAGGATAATA TTGCGGAGTA
CTACCAGCAG CAAGTTGAAG TGCTTGAGGG CTTTACTGAA ATGGATGCCC TAGCAGAGCG TGGTTTTATT CCTGGAATGT
CGAAGGTTTT AATTTCATTA TCTGTTTTTT GCTATCTAGA TTTACGTTGG TTATATAGTC AAGAGCCTTG GCTGAATATC
CACTGCTGTG GACAGGAGGA GCGAGACAAG TTAGCAAGAA GTGAGACGTT TGCCATCAGA TTGTCAAATG TAGCAAACAT
GGTTCTTTTT GTCGCCAAAG TTTATGCATC AATACGAAGT GGTTCCCTAG CCATCATTGC ATCGACTTTA GACTCGCTTC
TTGATCTTCT TTCTGGATTT ATCCTCTGGT TCACTGCATT TTCCATGCAG ACACCAAACC CGTATCAGTA TCCTATAGGA
AAGAAACGGA TGCAACCATT GGTCAGTTCC TTGATTAATA TTCTGTTTGA AATTATATGA ATCATCATCA CCAGTAATAT
GATCTCAGTG ATTATCAGGA GTTACTTTGT ATTCAATTTA CATATCAGGG AAGAATACTA CAATTTGGCT GCGTATGTAT
ATGCTCGAAT GTATAAAGAG TAAACTATAA AGTGAAATTT TAAATTGTAC AGGGAATTCT TGTTTTTGCC TCTGTCATGG
CTACACTGGG ACTGCAAATC ATCTTGGAGT CTATCCGCAC ATTAATATAT ACTGTAAGTT GATTTGTTGT ATATTTACAG
AGCCAAAGTT GACTCCAAAC TTATAGAACG ACAATAATTT TTCATTTAGT TCCTGAATCT CTTTTATTTC TTTGTAACTC
TAATGTATAT TGAATATTGA ATTAACATTT CCAGGACAAT GCATTCAACT TGACCAAGGA ACAAGAGCGA TGGGTTGTGG
GGATTATGCT TTCGGTGACT TTGGTGAAAT TCTTACTGAT GATTTATTGC CGCACTTTTA CTAATGAGAT CATTAAAGCC
TATGCCCAGG ATCATTTCTT TGATGTGATC ACTAATGTCA TTGGTCTTAT TGCTGCACTT TTGGCAAATT ATGTTGATGA
TTGGATGGAT CCTGTTGGTG CTATCATTGT AAGTTAATAC TTTCCTTTTG TTGGAGGTTT TGATTTGCTA TTTGTGGCCA
TAGAAAATGA TATATATGTT CGTTCTCAAA TTTTCCTTGA AGTTAAAAGA TGATAATATG TCTGTTGTTA GTTAGGATCC
AATTAGGGCT TCTTTTTTAT TATTGTTTCC TTTTATTTGA CTAATAGAAT ATATCTAATA ATTTTATATT GTTAGATTTC
CGATTTTAGC TTGTACAAAT TAGAAATTAT ATTAAATTGT CACTAAGGGA CTCTAATGCT TGACGTTTTT TTTACAAATT
TTCTGTGAAT TAATTGATAA GTCAGATTAA TTGCTTGGTC GGAAGGTAAA AGAACCACAA TTTACGAAAA ATATCACAGT
ATTTCAAGTT GTGTTATCCA TCAACAATTG TAGACATCTG TTTCTCAGCT TCTGCTATGT GTTCCTGATA TTTTTAAAAA
TCGAGGTCTT GTTTTCTTAA GATGAAATTT CTCATTGCTA TGTCAGCTGA TTGTGACTCT ATCTAATTAG CTATCATAAT
ATGGGACGCC TGTCCTTGAA CTATGCGTAT ATTATGATGG TTTGATATGC ACCTTTTATG CCTTGCACAC ATCCTCAATC
ACAGTTCTTG TGAGGCTTTT AAGTTTTAGC ACTATTTCTT ACTCAAGCTT ACCATTGGAG GAAGCTGTGG TGACTTCTAG
CTGCAAGAAC TGGTTCTCAT GATTATAGGA CATTTTAGAT ATGTGGAATC TATTTGAGAT GTTCTAAGAT TTTAGGGAAC
TACAATTGGT TCTTTGGAGC ACATCTAACT TACCACCACT TTGTACCTGG TCATTTAATG TTTTTTACTT GGTTTACTTA
CGTGCAACTC TTACTCCTGC AGCTGGCGTT GTACACCATT CGTACATGGT CAATGACAGT GTTGGAAAAT GTGAATTCCC
TGGTTGGAAA ATCAGCTGCA CCTGAGTATC TTCAGAAACT CACGTACCTA TGCTGGAACC ACCACAAGGC TGTGAGGCAC
ATTGATACAG TTCGAGCATA CACATTCGGG TCTCACTACT TTGTTGAAGT TGATATTGTC CTGCCAGCAG ATATGCAGTT
GCAAGAGGCC CATGATATCG GGGAATCATT GCAAGAGAAG CTTGAGCTTT TACCCGAGAT CGAGCGTGCT TTTGTTCATC
TTGATTATGA GTACAGTCAC AAACCTGAGC ATGCACAATC TCACTCTTAG CAGCAGTAAG GAAAACCAAT GTCCTTGTTT
TCATTTACCC TTTCATCTCC TGTCAGTTGT AAATGTGAAC CGTATATGGT AGTTCAGAAT CTGAACTTCT GAGCAAGTCA
CTAAGAAGTT GTTAGCTATA CCAGCAGCTA TCAGTCTACT TTCTGGCAGA CCTGACAATG TTCCCAAATG TATATCAAGA
TAGTCTTTTC AGTTAAGACC TTCCTTCCAA GTTCCATTTA GGGGAAACAG AATCGTTATA TTCTTGTAGA GTGCACTCTT
TCTACCTTAA TTAAGCTTTA AGGGGTTGTG TGCTGGTCTT GGTTATTTCT AACATCACCA AATACGATAA TATATACATA
ACATGCTAAG TTCTTCTTTT ACAAGACTAT TTTTTACTTG TAGACCTTAT TGTCTTATTT ATCTT

>Vigan.04G018200.01
AATGAAACCG CAACGCGTGT CGGAAAGTGC CGAAATATGA CCTGCGTGGT ACACGCGCCT ATCGGATCTC ATGTCACAGA
CTCTCTTGTT TATTTATCAT TTTTTTTTCT CATGAATCCC ACTTTACCGG TTCGAAAATC TGCTACGGCT GTTGTTATAA
CAAGCACCAA CCACGACGAC CCTGCTTGCA TTCTTTGCTC CTTCCGGGCT GTCCAAAACG ACGGCGTTTA AGATTCTCAG
GCGACCGGGA AATGGTGGAG ACGGCGGAGC TTCACGGCGA GGAGCAGCGC TCGTTGCTCT CAGATTCGAA CAATGGGGAC
CGGTCCTGGC GGTTGAACTT CGAGGGGTTT CAGATATCTT CGGAGCACAC GGAGAAGCAA GTGAAACCCT CTCGCGGACT
CTATGACTGT TATGGCGTTC TAGGTCAAGA GGATAATATT GCGGAGTACT ACCAGCAGCA AGTTGAAGTG CTTGAGGGCT
TTACTGAAAT GGATGCCCTA GCAGAGCGTG GTTTTATTCC TGGAATGTCG AAGGAGGAGC GAGACAAGTT AGCAAGAAGT
GAGACGTTTG CCATCAGATT GTCAAATGTA GCAAACATGG TTCTTTTTGT CGCCAAAGTT TATGCATCAA TACGAAGTGG
TTCCCTAGCC ATCATTGCAT CGACTTTAGA CTCGCTTCTT GATCTTCTTT CTGGATTTAT CCTCTGGTTC ACTGCATTTT
CCATGCAGAC ACCAAACCCG TATCAGTATC CTATAGGAAA GAAACGGATG CAACCATTGG GAATTCTTGT TTTTGCCTCT
GTCATGGCTA CACTGGGACT GCAAATCATC TTGGAGTCTA TCCGCACATT AATATATACT GACAATGCAT TCAACTTGAC
CAAGGAACAA GAGCGATGGG TTGTGGGGAT TATGCTTTCG GTGACTTTGG TGAAATTCTT ACTGATGATT TATTGCCGCA
CTTTTACTAA TGAGATCATT AAAGCCTATG CCCAGGATCA TTTCTTTGAT GTGATCACTA ATGTCATTGG TCTTATTGCT
GCACTTTTGG CAAATTATGT TGATGATTGG ATGGATCCTG TTGGTGCTAT CATTCTGGCG TTGTACACCA TTCGTACATG
GTCAATGACA GTGTTGGAAA ATGTGAATTC CCTGGTTGGA AAATCAGCTG CACCTGAGTA TCTTCAGAAA CTCACGTACC
TATGCTGGAA CCACCACAAG GCTGTGAGGC ACATTGATAC AGTTCGAGCA TACACATTCG GGTCTCACTA CTTTGTTGAA
GTTGATATTG TCCTGCCAGC AGATATGCAG TTGCAAGAGG CCCATGATAT CGGGGAATCA TTGCAAGAGA AGCTTGAGCT
TTTACCCGAG ATCGAGCGTG CTTTTGTTCA TCTTGATTAT GAGTACAGTC ACAAACCTGA GCATGCACAA TCTCACTCTT
AGCAGCAGTA AGGAAAACCA ATGTCCTTGT TTTCATTTAC CCTTTCATCT CCTGTCAGTT GTAAATGTGA ACCGTATATG
GTAGTTCAGA ATCTGAACTT CTGAGCAAGT CACTAAGAAG TTGTTAGCTA TACCAGCAGC TATCAGTCTA CTTTCTGGCA
GACCTGACAA TGTTCCCAAA TGTATATCAA GATAGTCTTT TCAGTTAAGA CCTTCCTTCC AAGTTCCATT TAGGGGAAAC
AGAATCGTTA TATTCTTGTA GAGTGCACTC TTTCTACCTT AATTAAGCTT TAAGGGGTTG TGTGCTGGTC TTGGTTATTT
CTAACATCAC CAAATACGAT AATATATACA TAACATGCTA AGTTCTTCTT TTACAAGACT ATTTTTTACT TGTAGACCTT
ATTGTCTTAT TTATCTT

>Vigan.04G018200.01
ATGGTGGAGA CGGCGGAGCT TCACGGCGAG GAGCAGCGCT CGTTGCTCTC AGATTCGAAC AATGGGGACC GGTCCTGGCG
GTTGAACTTC GAGGGGTTTC AGATATCTTC GGAGCACACG GAGAAGCAAG TGAAACCCTC TCGCGGACTC TATGACTGTT
ATGGCGTTCT AGGTCAAGAG GATAATATTG CGGAGTACTA CCAGCAGCAA GTTGAAGTGC TTGAGGGCTT TACTGAAATG
GATGCCCTAG CAGAGCGTGG TTTTATTCCT GGAATGTCGA AGGAGGAGCG AGACAAGTTA GCAAGAAGTG AGACGTTTGC
CATCAGATTG TCAAATGTAG CAAACATGGT TCTTTTTGTC GCCAAAGTTT ATGCATCAAT ACGAAGTGGT TCCCTAGCCA
TCATTGCATC GACTTTAGAC TCGCTTCTTG ATCTTCTTTC TGGATTTATC CTCTGGTTCA CTGCATTTTC CATGCAGACA
CCAAACCCGT ATCAGTATCC TATAGGAAAG AAACGGATGC AACCATTGGG AATTCTTGTT TTTGCCTCTG TCATGGCTAC
ACTGGGACTG CAAATCATCT TGGAGTCTAT CCGCACATTA ATATATACTG ACAATGCATT CAACTTGACC AAGGAACAAG
AGCGATGGGT TGTGGGGATT ATGCTTTCGG TGACTTTGGT GAAATTCTTA CTGATGATTT ATTGCCGCAC TTTTACTAAT
GAGATCATTA AAGCCTATGC CCAGGATCAT TTCTTTGATG TGATCACTAA TGTCATTGGT CTTATTGCTG CACTTTTGGC
AAATTATGTT GATGATTGGA TGGATCCTGT TGGTGCTATC ATTCTGGCGT TGTACACCAT TCGTACATGG TCAATGACAG
TGTTGGAAAA TGTGAATTCC CTGGTTGGAA AATCAGCTGC ACCTGAGTAT CTTCAGAAAC TCACGTACCT ATGCTGGAAC
CACCACAAGG CTGTGAGGCA CATTGATACA GTTCGAGCAT ACACATTCGG GTCTCACTAC TTTGTTGAAG TTGATATTGT
CCTGCCAGCA GATATGCAGT TGCAAGAGGC CCATGATATC GGGGAATCAT TGCAAGAGAA GCTTGAGCTT TTACCCGAGA
TCGAGCGTGC TTTTGTTCAT CTTGATTATG AGTACAGTCA CAAACCTGAG CATGCACAAT CTCACTCTTA G

>Vigan.04G018200.01
MVETAELHGE EQRSLLSDSN NGDRSWRLNF EGFQISSEHT EKQVKPSRGL YDCYGVLGQE DNIAEYYQQQ VEVLEGFTEM
DALAERGFIP GMSKEERDKL ARSETFAIRL SNVANMVLFV AKVYASIRSG SLAIIASTLD SLLDLLSGFI LWFTAFSMQT
PNPYQYPIGK KRMQPLGILV FASVMATLGL QIILESIRTL IYTDNAFNLT KEQERWVVGI MLSVTLVKFL LMIYCRTFTN
EIIKAYAQDH FFDVITNVIG LIAALLANYV DDWMDPVGAI ILALYTIRTW SMTVLENVNS LVGKSAAPEY LQKLTYLCWN
HHKAVRHIDT VRAYTFGSHY FVEVDIVLPA DMQLQEAHDI GESLQEKLEL LPEIERAFVH LDYEYSHKPE HAQSHS*