GBrowse Details

Vigan.04G012000.01

Basic Information:
Name: Vigan.04G012000.01
Multiple alignment
Variant Information
Position: Chr04:989778..992615 (+ strand)
Length: 2838
Functional Information:
Description: Similar to ATP-dependent Clp protease proteolytic subunit. [I1JDN1, Glycine max]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: serine-type endopeptidase activity (GO:0004252)
InterPro: ClpP (IPR001907)
ClpP, active site (IPR018215)
Clp protease proteolytic subunit /Translocation-enhancing protein TepA (IPR023562)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:182.19,61.92,32.69,127.65,34.79,39.12,21.04,23.62
Arabidopsis thaliana homolog: AT1G66670.1
Automatic updates:
Name: BT097617 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-22E20 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:989778..989953 (+ strand)
Length: 176
Type: five_prime_UTR
Position: Chr04:989954..990241 (+ strand)
Length: 288
Type: CDS
Position: Chr04:990637..990751 (+ strand)
Length: 115
Type: CDS
Position: Chr04:990895..991070 (+ strand)
Length: 176
Type: CDS
Position: Chr04:991921..992016 (+ strand)
Length: 96
Type: CDS
Position: Chr04:992091..992375 (+ strand)
Length: 285
Type: CDS
Position: Chr04:992376..992615 (+ strand)
Length: 240
Type: three_prime_UTR

>Vigan.04G012000.01 class=Sequence position=Chr04:989778..992615 (+ strand)
GAAAATTTTG AGCTGCGGGA AGAAAGCCCC GAAAAATAAA AAATCTGGAA ATGGTTGGGC TGGAAGAGGA AGAATGAAGC
CCAAATCTAG GTCCAAATCA CCATGTACCA AAAACAAAAT AAAAAGAAGG GGGGGAGTGA GTGAAGAGAA GAGAAAGAAA
ATAGGAGAAG AAGAAGATGG AGTTGAGTTT ATCTTCAACA TCGTGTATAC CCTTACGCTC CAAGCTGAAG CATAAGCATG
CCCTTTTCGA CTCGCAATTT CCGACTTCCA CAGCTTCAAC CAAAACAAGA AAAACCAAAC CTTTGTTTAT CGTTAACGCC
TCCAGACCAA CCTTGTCCTC CAATTGGCTC GTTTCTCCAC AGGATTTTTC TGCATCCACC GCTTCCCCAT GGCTTCCCAG
AGTCGAAGAG CTCGATACCA CCAACATGCT TCTCCGTCAA AGAATTATCT TTTTGGGTTC TCAGGTTCTC TCTCGTATAA
ATATATTGGG GGTGGATTTT GTTGTTTCCT TATTTTGTGG ATACCCTTTG TCTCTCTGAT TATGTTTTTA GGGGGAATTT
GCGAACTTGC TCATGTGGGT TCATTCTAAA GGACGCTCAC AATAAATAAG AATGAAGAAA CTTTATAGAG AGAGAGAGTG
GAAACGGGAA AATTGATATG ATAGTGTGTG AAATTGGTGA AGAGATGTTG TTTGGTGCTC TGTTAATTTT GGAGAAAATT
TTGACGTGTT AATGTCAGTT ATCCTGAACT GGGGTGCCCC AATATAACAA AATAAAAATA AAAAACACAG AAGGGAATGC
AACTGAAGAG AGTGAGACAG TATTTGATGG GGTGTTTTTG AATTGTTTTG CTTGATCAGG TGGATGATAT GACTGCAGAT
TTTATCATTA GTCAGCTTTT GCTTTTGGAC GCTGAAGACT CAAAGAAAGA CATTAAGTTA TTTATAAATT CACCTGGTGG
TTCTGTTACT GCTGGTATGT GTGCTTTTAC GTGTTTATTT TTATTCACCA GAGACTAACG AATGCACTTG ACTCGTAAGC
CCAATTTTGT GATTAGATGT TATCATGTTT TAATGACTCA GTTTACTGTT TTGCTCTTTG TTTATCGTTC AATGCAGGAA
TGGGAATTTA TGATGCCATG AAGTTGTGCA AGGCAGATGT GTCAACTGTT TGCCTTGGGC TTGCTGCGTC CATGGGTGCA
TTTATCCTTG CTTCTGGTAC AAAAGGGAAG AGGTATTGTA TGCCGAATTC AAGAGTTATG ATTCATCAAC CACTTGGAAC
TGCTGGTGGA AAAGTAAGAT TTGCCTTCTT GTATCTTTTG GCTTTGTTGA TTGTCAAAAC GAATTAGGTC TGAAGTTTTT
CATTATTATT TTCATTTTCC TTAAAATGAT CAGGTTAAAA ATAAAGCTAA TTTAGATTTC AAGCATGTTA GAGAAGTGTA
GGATGTAGGA GGAATACAAT TCCCTTCACT GCAATTATCT ATGTTAACTC ATTTCCAAGT TGAGATGTGT AAAGAAAACC
TGTGTTTTAA AAATAATACA GTCCAGAAAA TGTTACTTAA ATATAACTAT GAAACTTATT AGCTGACAAT ATTTGATTTG
TGTTTATGCT GATAACAAAC GTTTTTCTCG TATACTCTAT CAAGAAATGA TACAAGTGGT TTATTACAAA TAAATTTCAA
TCACCAAACA TGCTAATGAT AAGCTATTTG TCATTCTGAA CTAACAACTG GTTTCTGTTT TTCTGATGCG GGTCATGAAT
TGTTTCATGT TTTTGTTATG TGCCAAACTA TCAATCAAAT TATAAACTAG CTGCATACCA TTAATTTCAG TAAGTCGTGA
GTTCAGCATT GTCTATCTTT TTACATATCT CAACATAGCT TTTAAGTTAT AATGGGAGTC TTGGCACCTT GTTTAGCAAG
CTGTTTCTTT TAGGTGGCAC ATTAGATGTG CAAGCATGAG GTGGCTGTGT GGTGGATTGA ATCTCTGATT TCAGTGTCTC
GTCTGGTGTT AATGTTTTGG GTGTCTGTTA GGAATTCATA ATTTCTAGTG TGATTATTAT GCACATACAA TATGCATATT
AAGTTCTTCT CTTAATGGCT TTGAGCAAAA ACTTTACTCA TATATAATAA AATTTAATTG TAGGCTACTG ATATGAGCAT
TCGTATAAGA GAAATGGCAT ATCACAAGAT TAAGATCAAC AAGATACTAT CAAGAATTAC GGGGAAGTCT GAAGAGCAGG
TTAGATATTA GATGCATCCC CTTTTATCTA AATATGTCAC ATTACTATTT ACCCTTCAAT TTGTATAATT CAGATTGATC
TGGACACCGA TCGCGACAAT TTTATGAATC CATGGGAAGC TAAGGAGTAT GGTTTAGTTG ATGGCGTTAT TGACGATGGA
AAACCAGGAT TGATTGCACC AGTTGTAGAT GCAACACCAC CGCCAAAAAC CCGTGTGTGG GATCTATGGA AAGTTGAAGG
AAGCCGGAAA GCGAAGAAAA ATCTGCCGTC AGAGCACAAG CTTTTGAAGA AAGCTTCTAA AGGAAGTGAT GGTGATAAAG
GCAGTGGAAA AGAAGGAGAA GCACCCATTG CAGTATGAGT TAGGGAAGAT CTGTTTATTT TAATTTGTTA ATCACAAAAA
AGGGGTTTTC TCACTTAGAC ATAGAGGGTC ATATTCTACG TAATATTCTA CGTAATATTC ATACTGTATA TTAGTTATCA
TAAATTTCTT TAAATGTTTA GACTATTTTG ATGCCTTGAT GAATATAATG TTTTCTCCTC ATGGAATAGC CCACGAGACA
CAAAATGAGC CTATATGAGG GTTGGTTTTC GGGTTCAA

>Vigan.04G012000.01
GAAAATTTTG AGCTGCGGGA AGAAAGCCCC GAAAAATAAA AAATCTGGAA ATGGTTGGGC TGGAAGAGGA AGAATGAAGC
CCAAATCTAG GTCCAAATCA CCATGTACCA AAAACAAAAT AAAAAGAAGG GGGGGAGTGA GTGAAGAGAA GAGAAAGAAA
ATAGGAGAAG AAGAAGATGG AGTTGAGTTT ATCTTCAACA TCGTGTATAC CCTTACGCTC CAAGCTGAAG CATAAGCATG
CCCTTTTCGA CTCGCAATTT CCGACTTCCA CAGCTTCAAC CAAAACAAGA AAAACCAAAC CTTTGTTTAT CGTTAACGCC
TCCAGACCAA CCTTGTCCTC CAATTGGCTC GTTTCTCCAC AGGATTTTTC TGCATCCACC GCTTCCCCAT GGCTTCCCAG
AGTCGAAGAG CTCGATACCA CCAACATGCT TCTCCGTCAA AGAATTATCT TTTTGGGTTC TCAGGTGGAT GATATGACTG
CAGATTTTAT CATTAGTCAG CTTTTGCTTT TGGACGCTGA AGACTCAAAG AAAGACATTA AGTTATTTAT AAATTCACCT
GGTGGTTCTG TTACTGCTGG AATGGGAATT TATGATGCCA TGAAGTTGTG CAAGGCAGAT GTGTCAACTG TTTGCCTTGG
GCTTGCTGCG TCCATGGGTG CATTTATCCT TGCTTCTGGT ACAAAAGGGA AGAGGTATTG TATGCCGAAT TCAAGAGTTA
TGATTCATCA ACCACTTGGA ACTGCTGGTG GAAAAGCTAC TGATATGAGC ATTCGTATAA GAGAAATGGC ATATCACAAG
ATTAAGATCA ACAAGATACT ATCAAGAATT ACGGGGAAGT CTGAAGAGCA GATTGATCTG GACACCGATC GCGACAATTT
TATGAATCCA TGGGAAGCTA AGGAGTATGG TTTAGTTGAT GGCGTTATTG ACGATGGAAA ACCAGGATTG ATTGCACCAG
TTGTAGATGC AACACCACCG CCAAAAACCC GTGTGTGGGA TCTATGGAAA GTTGAAGGAA GCCGGAAAGC GAAGAAAAAT
CTGCCGTCAG AGCACAAGCT TTTGAAGAAA GCTTCTAAAG GAAGTGATGG TGATAAAGGC AGTGGAAAAG AAGGAGAAGC
ACCCATTGCA GTATGAGTTA GGGAAGATCT GTTTATTTTA ATTTGTTAAT CACAAAAAAG GGGTTTTCTC ACTTAGACAT
AGAGGGTCAT ATTCTACGTA ATATTCTACG TAATATTCAT ACTGTATATT AGTTATCATA AATTTCTTTA AATGTTTAGA
CTATTTTGAT GCCTTGATGA ATATAATGTT TTCTCCTCAT GGAATAGCCC ACGAGACACA AAATGAGCCT ATATGAGGGT
TGGTTTTCGG GTTCAA

>Vigan.04G012000.01
ATGGAGTTGA GTTTATCTTC AACATCGTGT ATACCCTTAC GCTCCAAGCT GAAGCATAAG CATGCCCTTT TCGACTCGCA
ATTTCCGACT TCCACAGCTT CAACCAAAAC AAGAAAAACC AAACCTTTGT TTATCGTTAA CGCCTCCAGA CCAACCTTGT
CCTCCAATTG GCTCGTTTCT CCACAGGATT TTTCTGCATC CACCGCTTCC CCATGGCTTC CCAGAGTCGA AGAGCTCGAT
ACCACCAACA TGCTTCTCCG TCAAAGAATT ATCTTTTTGG GTTCTCAGGT GGATGATATG ACTGCAGATT TTATCATTAG
TCAGCTTTTG CTTTTGGACG CTGAAGACTC AAAGAAAGAC ATTAAGTTAT TTATAAATTC ACCTGGTGGT TCTGTTACTG
CTGGAATGGG AATTTATGAT GCCATGAAGT TGTGCAAGGC AGATGTGTCA ACTGTTTGCC TTGGGCTTGC TGCGTCCATG
GGTGCATTTA TCCTTGCTTC TGGTACAAAA GGGAAGAGGT ATTGTATGCC GAATTCAAGA GTTATGATTC ATCAACCACT
TGGAACTGCT GGTGGAAAAG CTACTGATAT GAGCATTCGT ATAAGAGAAA TGGCATATCA CAAGATTAAG ATCAACAAGA
TACTATCAAG AATTACGGGG AAGTCTGAAG AGCAGATTGA TCTGGACACC GATCGCGACA ATTTTATGAA TCCATGGGAA
GCTAAGGAGT ATGGTTTAGT TGATGGCGTT ATTGACGATG GAAAACCAGG ATTGATTGCA CCAGTTGTAG ATGCAACACC
ACCGCCAAAA ACCCGTGTGT GGGATCTATG GAAAGTTGAA GGAAGCCGGA AAGCGAAGAA AAATCTGCCG TCAGAGCACA
AGCTTTTGAA GAAAGCTTCT AAAGGAAGTG ATGGTGATAA AGGCAGTGGA AAAGAAGGAG AAGCACCCAT TGCAGTATGA

>Vigan.04G012000.01
MELSLSSTSC IPLRSKLKHK HALFDSQFPT STASTKTRKT KPLFIVNASR PTLSSNWLVS PQDFSASTAS PWLPRVEELD
TTNMLLRQRI IFLGSQVDDM TADFIISQLL LLDAEDSKKD IKLFINSPGG SVTAGMGIYD AMKLCKADVS TVCLGLAASM
GAFILASGTK GKRYCMPNSR VMIHQPLGTA GGKATDMSIR IREMAYHKIK INKILSRITG KSEEQIDLDT DRDNFMNPWE
AKEYGLVDGV IDDGKPGLIA PVVDATPPPK TRVWDLWKVE GSRKAKKNLP SEHKLLKKAS KGSDGDKGSG KEGEAPIAV*