GBrowse Details

Vigan.03G277500.01

Basic Information:
Name: Vigan.03G277500.01
Multiple alignment
Variant Information
Position: Chr03:41685343..41688920 (- strand)
Length: 3578
Functional Information:
Description: Similar to Uncharacterized protein. [I1M8G8, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S9 (IPR000754)
Ribosomal protein S5 domain 2-type fold, subgroup (IPR014721)
Ribosomal protein S5 domain 2-type fold (IPR020568)
Ribosomal protein S9, conserved site (IPR020574)
Ribosomal protein S9, bacterial/plastid (IPR023035)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:88.92,64.35,34.23,116.83,12.14,54.55,7.71,20.24
Arabidopsis thaliana homolog: AT1G74970.1
Automatic updates:
Name: NM_001248816 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305975 (LOC100305975), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001361131 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 30S ribosomal protein S9 (LOC100811697), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:41685343..41685979 (- strand)
Length: 637
Type: three_prime_UTR
Position: Chr03:41685980..41686267 (- strand)
Length: 288
Type: CDS
Position: Chr03:41688564..41688884 (- strand)
Length: 321
Type: CDS
Position: Chr03:41688885..41688920 (- strand)
Length: 36
Type: five_prime_UTR

>Vigan.03G277500.01 class=Sequence position=Chr03:41685343..41688920 (- strand)
ATCCACTCAA GCTTGCATTT GCCAAGGCAG TGGAAAATGG CGGTTTCCCT TTCGGCACTC AGCACCTCCC TCTCTTCACT
TTCTTTCTCT TCCCACATTT CTCAGAGACC CAACACTCTC TCCTTCGCCA CAACGCTCTC CCTCTCGCGC TTCCCCAAAA
TCCCTTCCCT CGTCGTCTCC GCCACTGCGC TCGCCGAACC GGAAACCGAA GACCTCAAGA AGTTCGTCAA ATCGAGGCTT
CCTGGTGGCT TCGCCGCCCA GACCATCATA GGCACCGGTC GCCGTAAGAG CGCCATCGCT CGCGTCGTTC TCCAGGAAGG
AACCGGCAAA TTCATCATCA ATTACCGCGA CGCTAAGGTC TTGTCCCCTC TCTCCCTACT TCTTTCTCTG TTTCTTTCAG
ACTCTCACCC TACTTTATCA GTTTCGTTGA TTTTGTCATT AATCGGAATT TCGAGTTCTG GTTTATAATT TGCCTAAATG
TGAATGACAT ATATCTCTGT GTTTTACTGT TTAGTTAGTT GAATTGAGAT GCTCAGTTTG TAGTAAATCA TCATTTTAGT
TCCTAAGAGT GCATAGTGTA GTTCCGTTAG TCCTGAATCT CAAGGAATTC TACGTAAGTC CGGGGAAGTG CAATTTGTCA
ATCATATTAC TCCAAAATAT GGATAAAAGC GTGACTTAAA TGATATATTA ACATATATTT AGGAATTAGA ATGATAGTAA
GTGGATAAGT TTAGAAAATT AGATAAAATG ATTCAACTGG AAATTTCAGG ACTTGTTTGC TATATTAAGT TCGTTTTATT
TTGTTTACTT AGTAGTGTTT GTGGAATTTT TTATCCAGAC AGGGTATTGG TTAGTTGATT TTGTTTGTCC GAGGTTCTGT
TAATAGCTCA ATCATTACAG TTATATGAGT TGATGTATTA CAGCTGCTGA TATATGTATG TATTGTGCTA CACTGTGAAA
TTCAGCCGAT TCAGAATATT CTGATTCATA AACTCTCTGG TATCTGGTGT TGTATTGGAA GTTCTTTGAC TTCCTGTGAT
TTCTGTTCTT GCTCGTCAGT GGCTATCTTC CTTTCTTCCA TGGATGACTG CTCCAATTCA TTCTTTCTTT ACACTATGGA
TAACCCATGT CTGAACCCGG TTTTTTCTTA ACAACCAGTC ACCATTGCCA CTAATTGTTC TGTGCCATGA AATTGTCTCA
GTTGAGAAAG CAGATAGTTT TGCGGATGGC ACACAGTCAA CGGAGGAGAT GGTTCTGGTG CTTTGCTGCT TCTGGAATGA
CAGAGTAACT AAAGTGTCCT TTTCTTTTTG CTCCCAATGT TTTTCTCCTA GGAAGTTAAT GTGACTGCAA TTGCATTGGA
CCTTAAGCAC ACTTTTAGCA ACATAATGGA CGTCTTGTTT TTCAGTTGAC GGAGTTGATT AACTACACTC AGGGGTAACT
TAATGTGAGT CATTATTGTA AGACTGAGAG GGTATATGGG AAGAGCTGGG TGAGTATTCT GTCAAGGTGT GAAATCTCTT
CTTGAATACA TTCACATTGA TGTGTCACAG GCTTCCTAAT CGGCCTTAGT CACGCTTTCT CCCAAGTCAG AGGTTAGATT
ATACCAATGA CAGCATTCAA ACGTTAGGCT TAGTCATGAT TGTGGGAAAA TTAATGGAAA TAAACGAGCC ACTATACTGA
AGAAAAGAAG GTAACGTAGT TCTCATTCGT GATTTCCAGT ATACCTATTT AAAAGACCAA AGGTAATTGT ACTACTGAAA
TCCAAGGTTA GAGACATCCT ACCGGTAAAG GATAAAGAAA ATTTGAAATA GGTCACTTCT AATAGTAGTT GTTCAGCCAT
GGCCTAGAGG ATGTCTGTTT GGGTTTGGGA AGGCCCATGT GGCCTGGAGT GTCATGAGTT GTCTTTGGGC GGGCTGCTAA
TAGGATCCCA TACTTTCCGT TAACAAGATT TTCTACCTGA TTATTCAGTA AGAAAACAAA GACCCTGACT GCTCAACCTG
AAGCACTACT TGCATATGCC GTGCCAACTT CTGCTTCACA ACCAGGGGGG GGGGGGGGGG GTAGACTCCA ACTTCACTTT
GGCTTTGCAT GGTTGAGTTG ATGTAGATAG TTTTCAAGTT CCTTTTATTT TCCACCATCT CTACCAAACA TCCCTTCAGG
TGTGTCATTT GATTTGGTGG CTTATACAAG ATATAATTTG AATATCTGCC AGGTGTTGGA TTTTTTATTA AGTTTTTTGC
TTAGCATTGT TGAAGAATAA TCAATACTAC GAGTTGCGAT GATACAATGT ATATGTGTGG TGGGTCTTTT ACTGTTTTAT
TTAAATTAAT TTTGTATTTT CATAATGAAT GGGTTGCTTT TACTAATTTG TCTGATTGAA GTTTTTTGGT GGCTCGTTGT
TTCTTTTCTA CTATTAAAAA GAAATTTCTC ATATTGTCAT TTTGGATTTA GGATTTAATG AGAAATTTAT CATAATGTTC
GAGTTATTTG TAATCTGTGG ACGACCTTTT TACAGTTGTG GTTGTGTCTT TTAGGAGTTT TCATTTTTTT TTTGTGGATT
TTTACACGTT AGATCTGTGT CTCTTTTTTG TGATTGACAA ATGTTGTTTC CTTTTGATCT CTTTTTTGTC TGATTTACAT
TAATTTTGTG CAGGAATATC TTCAAGGAAA CCCATTGTGG CTTCAATACA TTAAGGTCCC TTTGATAACT TTGGGATATG
AAAGTAGTTA TGATGTTTTT GTCAAAGCTG AGGGTGGTGG CTTGTCTGGT CAGGCACAGG CAATTTCTCT TGGCATTGCC
CGTGCCTTGC TGAAGGTGAG CGAAGATCAT AGATCACCAT TGAGACAGGA AGGACTTCTT ACCAGAGATT CCAGAGTGGT
TGAGAGGAAG AAAGTTGGTT TGAAGAAAGC TCGTAAAGCC CCTCAATATT CCAAACGTTG AGGTTGGGAT TTTACATGTA
TGGTTTGTAT TTTTCTGTCC TCCTGGTGTC TCTGGAATGG GATTATATTG GAAACAACTA TTTGTTTTCA TTTGTTGTTG
TAGATTTTCG TTAGAGAAAG TAAAGAGAGA TTGAGAAGTA TCCCAAGGCG TGTAATGTAT TCAGAATCTT GCCATCCGTT
TCCCCATCCC TTGTTTCCTT GATCTGTATG GAATTGGAAT TGTAGGTATG ATGATATTTC TCTTTCACCC CCAACCAAAC
TAGTGGTTTA CTACCATAGT GCAGGTTTCT TTTCCTGACC TAAATTGTGG TACTTATCCT TAATTTCTTA TGCCTATTTG
TTCCTTCATT TGGCATATTG AGATAAATAA TGGCGTGTGA AATTTCTTAG TGTATCAATT TTTCATCGTT TGTCAGAGGT
AGACATAAAC TTTGATTGGT TGTGCCTCTA GACATCATGC TGTCACAAGA ACAACTCTTG TACAGAAATT CTTGATAAAA
TAATACCAAA GAAAAAATGG ATGTGCAACA ATTTAGTTTC CATGCCAATC GCCTCCAGTA TTCTTGTTAT CTATGCCAAG
CCTATCACTC TATTATCTCT CTGTAGATAT AGTGAAGATG TTACATTTGT TTCTATTG

>Vigan.03G277500.01
ATCCACTCAA GCTTGCATTT GCCAAGGCAG TGGAAAATGG CGGTTTCCCT TTCGGCACTC AGCACCTCCC TCTCTTCACT
TTCTTTCTCT TCCCACATTT CTCAGAGACC CAACACTCTC TCCTTCGCCA CAACGCTCTC CCTCTCGCGC TTCCCCAAAA
TCCCTTCCCT CGTCGTCTCC GCCACTGCGC TCGCCGAACC GGAAACCGAA GACCTCAAGA AGTTCGTCAA ATCGAGGCTT
CCTGGTGGCT TCGCCGCCCA GACCATCATA GGCACCGGTC GCCGTAAGAG CGCCATCGCT CGCGTCGTTC TCCAGGAAGG
AACCGGCAAA TTCATCATCA ATTACCGCGA CGCTAAGGAA TATCTTCAAG GAAACCCATT GTGGCTTCAA TACATTAAGG
TCCCTTTGAT AACTTTGGGA TATGAAAGTA GTTATGATGT TTTTGTCAAA GCTGAGGGTG GTGGCTTGTC TGGTCAGGCA
CAGGCAATTT CTCTTGGCAT TGCCCGTGCC TTGCTGAAGG TGAGCGAAGA TCATAGATCA CCATTGAGAC AGGAAGGACT
TCTTACCAGA GATTCCAGAG TGGTTGAGAG GAAGAAAGTT GGTTTGAAGA AAGCTCGTAA AGCCCCTCAA TATTCCAAAC
GTTGAGGTTG GGATTTTACA TGTATGGTTT GTATTTTTCT GTCCTCCTGG TGTCTCTGGA ATGGGATTAT ATTGGAAACA
ACTATTTGTT TTCATTTGTT GTTGTAGATT TTCGTTAGAG AAAGTAAAGA GAGATTGAGA AGTATCCCAA GGCGTGTAAT
GTATTCAGAA TCTTGCCATC CGTTTCCCCA TCCCTTGTTT CCTTGATCTG TATGGAATTG GAATTGTAGG TATGATGATA
TTTCTCTTTC ACCCCCAACC AAACTAGTGG TTTACTACCA TAGTGCAGGT TTCTTTTCCT GACCTAAATT GTGGTACTTA
TCCTTAATTT CTTATGCCTA TTTGTTCCTT CATTTGGCAT ATTGAGATAA ATAATGGCGT GTGAAATTTC TTAGTGTATC
AATTTTTCAT CGTTTGTCAG AGGTAGACAT AAACTTTGAT TGGTTGTGCC TCTAGACATC ATGCTGTCAC AAGAACAACT
CTTGTACAGA AATTCTTGAT AAAATAATAC CAAAGAAAAA ATGGATGTGC AACAATTTAG TTTCCATGCC AATCGCCTCC
AGTATTCTTG TTATCTATGC CAAGCCTATC ACTCTATTAT CTCTCTGTAG ATATAGTGAA GATGTTACAT TTGTTTCTAT
TG

>Vigan.03G277500.01
ATGGCGGTTT CCCTTTCGGC ACTCAGCACC TCCCTCTCTT CACTTTCTTT CTCTTCCCAC ATTTCTCAGA GACCCAACAC
TCTCTCCTTC GCCACAACGC TCTCCCTCTC GCGCTTCCCC AAAATCCCTT CCCTCGTCGT CTCCGCCACT GCGCTCGCCG
AACCGGAAAC CGAAGACCTC AAGAAGTTCG TCAAATCGAG GCTTCCTGGT GGCTTCGCCG CCCAGACCAT CATAGGCACC
GGTCGCCGTA AGAGCGCCAT CGCTCGCGTC GTTCTCCAGG AAGGAACCGG CAAATTCATC ATCAATTACC GCGACGCTAA
GGAATATCTT CAAGGAAACC CATTGTGGCT TCAATACATT AAGGTCCCTT TGATAACTTT GGGATATGAA AGTAGTTATG
ATGTTTTTGT CAAAGCTGAG GGTGGTGGCT TGTCTGGTCA GGCACAGGCA ATTTCTCTTG GCATTGCCCG TGCCTTGCTG
AAGGTGAGCG AAGATCATAG ATCACCATTG AGACAGGAAG GACTTCTTAC CAGAGATTCC AGAGTGGTTG AGAGGAAGAA
AGTTGGTTTG AAGAAAGCTC GTAAAGCCCC TCAATATTCC AAACGTTGA

>Vigan.03G277500.01
MAVSLSALST SLSSLSFSSH ISQRPNTLSF ATTLSLSRFP KIPSLVVSAT ALAEPETEDL KKFVKSRLPG GFAAQTIIGT
GRRKSAIARV VLQEGTGKFI INYRDAKEYL QGNPLWLQYI KVPLITLGYE SSYDVFVKAE GGGLSGQAQA ISLGIARALL
KVSEDHRSPL RQEGLLTRDS RVVERKKVGL KKARKAPQYS KR*