GBrowse Details

Vigan.03G268700.01

Basic Information:
Name: Vigan.03G268700.01
Multiple alignment
Variant Information
Position: Chr03:40867901..40869738 (+ strand)
Length: 1838
Functional Information:
Description: Similar to Uncharacterized protein. [K7MNN6, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Homeobox domain (IPR001356)
Homeodomain-like (IPR009057)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.26,0.05,3.16,1.59,1.81,3.65,8.68,28.51
Arabidopsis thaliana homolog: AT1G46480.1
Automatic updates:
Name: BT091619 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-8M2 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:40867901..40868062 (+ strand)
Length: 162
Type: five_prime_UTR
Position: Chr03:40868063..40868299 (+ strand)
Length: 237
Type: CDS
Position: Chr03:40868678..40868992 (+ strand)
Length: 315
Type: CDS
Position: Chr03:40869175..40869327 (+ strand)
Length: 153
Type: CDS
Position: Chr03:40869328..40869738 (+ strand)
Length: 411
Type: three_prime_UTR

>Vigan.03G268700.01 class=Sequence position=Chr03:40867901..40869738 (+ strand)
CTGCACCTCA TGATTTGGTC TTGGTTGTTG CAGGCAACAC CTCATTTCCC ACTTTGTTCA CTTTAATCAC TGTTTGTTAT
CATCCACCAC CATTCCTCTG TATAAAAACA CCAACTGCTC CACCATGTTG TAGCTACTAG TTATAACTCA CTAACTATAA
CCATGAAGGT GCATCAGTTC GCACGTGGAT TCTGGGAGCA CGAACCCTCC CTCACGCTCG GCTGCAAACG CTTACGACCC
CTTGCCCCCA AGCTTTCCAA CACTGACTCC ACTACCTCCA TCACTTCACC TCCTGTCACA ACTTTCGACC TCAAGAGCTT
CATCAAACCA GAAAGTGCTT CCAGAAAACT TGGATCCTCT CATGACAATA AGAGAGACCC TTCTTCACCT CAGGGCCAGG
TCCATTTACA TATTCTATTC TCTCTAATTA CAAGTAAATA CAAATTTAAT CAGTTTTATT GAATTCAGTT AGTCTTAAAT
TACAATTCTA ATCATGATAA AAAAACTTAT TATACAAACT TTAATCACAT TACCATACGA GAGACTGTAT AAAAAACACT
ATATACGCTC ATCATGGTCT TAAAACTACT GAAGTTAGTA CAGCGTAAAG ATTTTTAGAC TATAACTGCA TTAAGTTTAC
TTGTCTGTAA TTTGTCACGG TAGAAAAATT CAGAAAGAAA CTATAACTAG AGTTTAGAAC CGTGATAATT GTACTCGTGG
CAATTATTTC ACGTAGATGG TTTAACAGAT TTTTGTTTAT TTTGTATTAT GATGCAGGTG GAAACGCATA TTCCAGGAGG
GACGCGGTGG AATCCGACGC AGGAACAGAT AGGGATACTG GAGATGCTGT ATAGAGGAGG GATGCGAACA CCGAATGCTC
AACAGATAGA GCAGATCACA GTCCAACTAA GCAAGTACGG CAAGATCGAA GGGAAGAACG TGTTCTATTG GTTCCAAAAC
CACAAGGCAC GCGAGAGACA GAAGCAGAAG CGTAACAACC TCGGCCTTGC TCATAGTCCT CGTACTCCCA CCACCCTAGT
GTCACCTTCC TTCAGTTGTA GTGTAATAAC CTCTTTGGAC ACGACAAAAC GGGTATGTCT ATACATGTCT GAACAGGATT
TTCTGTCACA AACTTTCTAT TCAACAATAC AAACTATTAG GTGATATTCA TGGGAATGTT GTGCATGAGA CGGGAAGCTG
TTATTGATTA AGAACACTTA GTTAGTTGAT GTTATGACAC GGTTTTTGAT TTATTAATGT TTTTGTTTTT TAAGGGGGAG
GTGGTGGAAA GAGATGAAGA AGATAGCCCT TTGAAGAAGT GTAGGAGCTG GGCATTTGAG TACTTGGAAG ACCAAAGTTG
GTCATCATGG AAAGAGGAGG AACACAGAAC TCTGGAGCTT TTCCCGTTGC ACCCGGAAGG CAGATGAAGG GGTTTGTTTG
GTTGTTTTGT TCATTTGTTT AACCATTTAA CGAGAAACAA TTTTAGCTTT TTTGTTTTGT TTAGTTTGCT TTTAGTTTTC
ACTTTCTTCT TTGGTTGTGT CGGGAAAGAA GAAAAAGACA AAGTTGTCTA CACCTTGTAC TGTTCCCGCG CGCTCTGAGA
CCAAATTAAC CAAACCTGCG TAATTGTCTC TTTACTTGTT GATTTCAGCG CAGTGGGTGT GAATAAATCG AAGCTTTTAG
GTTAAAAGGA GGAGCTACGG ACACTGAAGT CCACGCACCT ACTCCTTCTA TACTTCTTCT TGAATCTTAA ACCTACTTTA
CAGCTTCGAA CAGGGATTCA CATAGTATAG TTAACATGTT CTGAGAATCA TTTATAATTG GTGTCAATTC ATAAACAG

>Vigan.03G268700.01
CTGCACCTCA TGATTTGGTC TTGGTTGTTG CAGGCAACAC CTCATTTCCC ACTTTGTTCA CTTTAATCAC TGTTTGTTAT
CATCCACCAC CATTCCTCTG TATAAAAACA CCAACTGCTC CACCATGTTG TAGCTACTAG TTATAACTCA CTAACTATAA
CCATGAAGGT GCATCAGTTC GCACGTGGAT TCTGGGAGCA CGAACCCTCC CTCACGCTCG GCTGCAAACG CTTACGACCC
CTTGCCCCCA AGCTTTCCAA CACTGACTCC ACTACCTCCA TCACTTCACC TCCTGTCACA ACTTTCGACC TCAAGAGCTT
CATCAAACCA GAAAGTGCTT CCAGAAAACT TGGATCCTCT CATGACAATA AGAGAGACCC TTCTTCACCT CAGGGCCAGG
TGGAAACGCA TATTCCAGGA GGGACGCGGT GGAATCCGAC GCAGGAACAG ATAGGGATAC TGGAGATGCT GTATAGAGGA
GGGATGCGAA CACCGAATGC TCAACAGATA GAGCAGATCA CAGTCCAACT AAGCAAGTAC GGCAAGATCG AAGGGAAGAA
CGTGTTCTAT TGGTTCCAAA ACCACAAGGC ACGCGAGAGA CAGAAGCAGA AGCGTAACAA CCTCGGCCTT GCTCATAGTC
CTCGTACTCC CACCACCCTA GTGTCACCTT CCTTCAGTTG TAGTGTAATA ACCTCTTTGG ACACGACAAA ACGGGGGGAG
GTGGTGGAAA GAGATGAAGA AGATAGCCCT TTGAAGAAGT GTAGGAGCTG GGCATTTGAG TACTTGGAAG ACCAAAGTTG
GTCATCATGG AAAGAGGAGG AACACAGAAC TCTGGAGCTT TTCCCGTTGC ACCCGGAAGG CAGATGAAGG GGTTTGTTTG
GTTGTTTTGT TCATTTGTTT AACCATTTAA CGAGAAACAA TTTTAGCTTT TTTGTTTTGT TTAGTTTGCT TTTAGTTTTC
ACTTTCTTCT TTGGTTGTGT CGGGAAAGAA GAAAAAGACA AAGTTGTCTA CACCTTGTAC TGTTCCCGCG CGCTCTGAGA
CCAAATTAAC CAAACCTGCG TAATTGTCTC TTTACTTGTT GATTTCAGCG CAGTGGGTGT GAATAAATCG AAGCTTTTAG
GTTAAAAGGA GGAGCTACGG ACACTGAAGT CCACGCACCT ACTCCTTCTA TACTTCTTCT TGAATCTTAA ACCTACTTTA
CAGCTTCGAA CAGGGATTCA CATAGTATAG TTAACATGTT CTGAGAATCA TTTATAATTG GTGTCAATTC ATAAACAG

>Vigan.03G268700.01
ATGAAGGTGC ATCAGTTCGC ACGTGGATTC TGGGAGCACG AACCCTCCCT CACGCTCGGC TGCAAACGCT TACGACCCCT
TGCCCCCAAG CTTTCCAACA CTGACTCCAC TACCTCCATC ACTTCACCTC CTGTCACAAC TTTCGACCTC AAGAGCTTCA
TCAAACCAGA AAGTGCTTCC AGAAAACTTG GATCCTCTCA TGACAATAAG AGAGACCCTT CTTCACCTCA GGGCCAGGTG
GAAACGCATA TTCCAGGAGG GACGCGGTGG AATCCGACGC AGGAACAGAT AGGGATACTG GAGATGCTGT ATAGAGGAGG
GATGCGAACA CCGAATGCTC AACAGATAGA GCAGATCACA GTCCAACTAA GCAAGTACGG CAAGATCGAA GGGAAGAACG
TGTTCTATTG GTTCCAAAAC CACAAGGCAC GCGAGAGACA GAAGCAGAAG CGTAACAACC TCGGCCTTGC TCATAGTCCT
CGTACTCCCA CCACCCTAGT GTCACCTTCC TTCAGTTGTA GTGTAATAAC CTCTTTGGAC ACGACAAAAC GGGGGGAGGT
GGTGGAAAGA GATGAAGAAG ATAGCCCTTT GAAGAAGTGT AGGAGCTGGG CATTTGAGTA CTTGGAAGAC CAAAGTTGGT
CATCATGGAA AGAGGAGGAA CACAGAACTC TGGAGCTTTT CCCGTTGCAC CCGGAAGGCA GATGA

>Vigan.03G268700.01
MKVHQFARGF WEHEPSLTLG CKRLRPLAPK LSNTDSTTSI TSPPVTTFDL KSFIKPESAS RKLGSSHDNK RDPSSPQGQV
ETHIPGGTRW NPTQEQIGIL EMLYRGGMRT PNAQQIEQIT VQLSKYGKIE GKNVFYWFQN HKARERQKQK RNNLGLAHSP
RTPTTLVSPS FSCSVITSLD TTKRGEVVER DEEDSPLKKC RSWAFEYLED QSWSSWKEEE HRTLELFPLH PEGR*