GBrowse Details

Vigan.03G256900.01

Basic Information:
Name: Vigan.03G256900.01
Multiple alignment
Variant Information
Position: Chr03:39607445..39610251 (- strand)
Length: 2807
Functional Information:
Description: Similar to UPF0587 protein C1orf123 homolog. [XP_004498924.1, Cicer arietinum]
InterPro: Protein of unknown function DUF866, eukaryotic (IPR008584)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:58.12,61.35,42.99,29.58,66.68,96.31,28.15,40.55
Arabidopsis thaliana homolog: AT4G32930.2
Automatic updates:
Name: NM_001249713 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527737 (LOC100527737), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251329 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500192 (LOC100500192), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:39607445..39607712 (- strand)
Length: 268
Type: three_prime_UTR
Position: Chr03:39607713..39607835 (- strand)
Length: 123
Type: CDS
Position: Chr03:39608528..39608695 (- strand)
Length: 168
Type: CDS
Position: Chr03:39609869..39609976 (- strand)
Length: 108
Type: CDS
Position: Chr03:39610093..39610194 (- strand)
Length: 102
Type: CDS
Position: Chr03:39610195..39610251 (- strand)
Length: 57
Type: five_prime_UTR

>Vigan.03G256900.01 class=Sequence position=Chr03:39607445..39610251 (- strand)
CCAAAACATC AAAATACCGG AAGCAGAAGT GTTATTGTGT ATCAGAGAGA GAGAGAAATG GTGAACTTCA CGTTGATGAT
CACTGCGGAG CTTGAGAATC TCACCAATCT TCAACCCCAA GGTGGCTGCG ACGATCCCGA TTTCTCTTAC CTTTTCAAGG
TTTCTTTCTT TCTCCTTCAT CTCTTCCAAT TTATCAAATT CAACTTTTTT TAGTTTCTTT CAGTTTTTCA TTCTCTTTCA
GTTTTTCATT TTTGTTCTGT TGTTGCAATC AATAGTTGAA ATGTGGGAGA TGCGGTGAAA TCAGCCAGAA AGAAACATGC
GTCCTCTTAA ACGACACTGT TCCTCTTCCG GTTGGAAAGG GCACCACTCA TCTCATTCAA AAAGTAACCT AATTCTCCCT
TTGCTTGCGT TTCATAAAAA AAAATTCTTT CATTTCCCAA TTCAATAAAT CCGTGCATTT AATAGTCCCT GAAAGATTGT
GATTGATTCT CGCATGAGTC TCTTACACAT TTCTCAGTTC AAGTTCTTAT TACTCTCTCA TAGTTTATTG GTAATCACAA
AATGTGGTGG GTCCTACTAC TTTTTGAATT AGTCTCTTCT GATGATTTCT GATAAAATTT ATCTCAGCAT TCCTCATCGG
AATTAATGAC CTTAGGAACT TCTTGTGATT TTCATCTTTG TATACGTTGG CAAGAATTTA GTAATCATGC ACACCTTTAA
AATAATTTTA CATCGTTATC CAATCATAAA CTGTTGTTGG TTTGAGTTTT AAGATGACTA TGGTGGAAAG TGACAAACTT
AGTTTCGTTA ATGATTGAAA GATAGTCCAC AATGTAAACA CACCATTGAG GTGATCTGAT ACTGTTAGTG CATAAAATAT
TTTTCTCATT GGCTGTCAAA AAAACAGTTT TTCTCAATTC ATAATGCTAT CTGTTTACTT TTAGAGATAT GTAATTTTTC
AGTGTGTCCC TTTTATGATG TATTTATGAA CGGTAGAAAA GACAAGTGAA ACTGTCCACT GCACTAGTAT TTGCAATCTT
CACTGTTAGG CTCATCGACT TTTTTTTTTT TTTCAATTAG GTGAAATGAA ACTATATTTG GATAAACTTC TCTATAAATA
TTTGTAGTTG AAAAAAGAGG TAAAATGACT TGAACTTCTC TATAATCTAA AATGATCGAA CTTATGTGCC TTAGGCTTTT
GAAAAGTTAA ATGAAAAGAG CTTTTTGTGG AAGTTTATGT GAGAAGCTTA ATTCTTTTAC CTGATTATGT TTCTCTTATA
AATACTTATG GATAATTTTA TCCAAATATG ACCCAAGTGC ATTAAAGAAA CACCAACTGA GCAGAATTCT ATTCGTTTAG
CGTGATTGGG CTTTTACTTA TGTGGTTATT TTTCTGTCTC TGACGTAGTA GGAAAGGTTC TGAAAATTTT ATGTGATTCT
GCTGCATAAC TTTAAAATGA TAAGCACTCA ATGCAGTGTT TTCTTTCATT TGTGCTTCTT TAAACTGTTT GCTCCTGCAG
CTGGTGGTTT CTTAGTATCC TTTATTTGGT ATGTAGTGCA AATTTTGTGG CAGGGATGGC ACTGTAACCA TGATCGAAGG
CAAAGGTAAA CCACTCACCC AGGAAATCAG TGAATCAGGG AAGTACGCCC CATTGATGTT ATTTGACTGC AGGGGCTATG
AACCAGTAGA TTTTGTATTC GGTGATGGAT GGAAAGTTGA ATCGGTGAGT ATCCTTTTTA ATTTCATTCT ATGTTTCCAT
TTTTTTGCTG TCACATTATC TGGTCTCTTT TGATTGTTCA TTGTTGCTTC TGACATGTAA GCATATGAGT TTGTATTGTA
TATATAGTTC ATATACTCAC TTTCCTCTAT TGAAAACAAA TACGTTAGCT TAATGGCATC ATGTGTCCGA TCTCTTCTGA
TTATTCAGTG TTGCTGATAT ATATGCTGGG CATTGTAAAT ATCTCATTAT ACTCACTCTT CTGCATTGAA ACATGTGCTT
CCTTTGTTTT GGTTTGATGC TTACTGTTAA TGATTCAATT TATTTTGTTC ACTGTTATCA AGACTGGAAA CGATGTCTGT
AATGTTTTTC TAAGAATTTA AAACTGGGAT GAATTTGATG TGATTAATTA ATCTCAAAAT CTTCTATTCC AGTCTTAAAA
AATTAAACCT ATAATTACAT ATGGGAAAGT GATCAGGTTC TAAATAGTTT CGATCATCAC AATTTGCAAG ATACAGCCCT
TTTCTACCCT CTTGAATAAA ATTTCATTCG AAATTGTACA GTACTATATT TTCCTGGTGC AGAAACCTGT AATTTAACCC
TATAGCCATA TTTCTAACAC GCCCTATAAT TTTGGTAATA TCATATTTTT CTGCATGTTG GTCATATTTC TGACTGATGC
AACTTGAATT TTGAAGCTTG AGGGAACCAA ATTTGAGAAT GTTGACTTGT CAAGTGGAGA ATATGCTGAC TATGACGAGA
AGGGAGAATG CCCAGTCATG ATATCTGCTC TTCGAGCTAC TTTTGAAGTG ACAAAGTAGA AAACTGGTTT GCTGTGTAAA
CACTTTCTTG ATGTATAAAT TGACTGTTCT CTTCTAGATG AGCTTTTGAG CTCTGGGTTG CATCTTAATC AGGCAAGAAA
TTGTGGAATC TTCTAACATT ACATGTTAAC CTTGTATTTC TTCAAGAGAA AAAAAAAAAC AGCTTCAAGT TCCGTGTGAT
TGATGAAGTT TACTTTTTCA TTGGTATCAC TGGACATGAC ACCACGACAC CACGCTAAAT ATTAAATTTT AAATTTGATT
ATTAATA

>Vigan.03G256900.01
CCAAAACATC AAAATACCGG AAGCAGAAGT GTTATTGTGT ATCAGAGAGA GAGAGAAATG GTGAACTTCA CGTTGATGAT
CACTGCGGAG CTTGAGAATC TCACCAATCT TCAACCCCAA GGTGGCTGCG ACGATCCCGA TTTCTCTTAC CTTTTCAAGT
TGAAATGTGG GAGATGCGGT GAAATCAGCC AGAAAGAAAC ATGCGTCCTC TTAAACGACA CTGTTCCTCT TCCGGTTGGA
AAGGGCACCA CTCATCTCAT TCAAAAATGC AAATTTTGTG GCAGGGATGG CACTGTAACC ATGATCGAAG GCAAAGGTAA
ACCACTCACC CAGGAAATCA GTGAATCAGG GAAGTACGCC CCATTGATGT TATTTGACTG CAGGGGCTAT GAACCAGTAG
ATTTTGTATT CGGTGATGGA TGGAAAGTTG AATCGCTTGA GGGAACCAAA TTTGAGAATG TTGACTTGTC AAGTGGAGAA
TATGCTGACT ATGACGAGAA GGGAGAATGC CCAGTCATGA TATCTGCTCT TCGAGCTACT TTTGAAGTGA CAAAGTAGAA
AACTGGTTTG CTGTGTAAAC ACTTTCTTGA TGTATAAATT GACTGTTCTC TTCTAGATGA GCTTTTGAGC TCTGGGTTGC
ATCTTAATCA GGCAAGAAAT TGTGGAATCT TCTAACATTA CATGTTAACC TTGTATTTCT TCAAGAGAAA AAAAAAAACA
GCTTCAAGTT CCGTGTGATT GATGAAGTTT ACTTTTTCAT TGGTATCACT GGACATGACA CCACGACACC ACGCTAAATA
TTAAATTTTA AATTTGATTA TTAATA

>Vigan.03G256900.01
ATGGTGAACT TCACGTTGAT GATCACTGCG GAGCTTGAGA ATCTCACCAA TCTTCAACCC CAAGGTGGCT GCGACGATCC
CGATTTCTCT TACCTTTTCA AGTTGAAATG TGGGAGATGC GGTGAAATCA GCCAGAAAGA AACATGCGTC CTCTTAAACG
ACACTGTTCC TCTTCCGGTT GGAAAGGGCA CCACTCATCT CATTCAAAAA TGCAAATTTT GTGGCAGGGA TGGCACTGTA
ACCATGATCG AAGGCAAAGG TAAACCACTC ACCCAGGAAA TCAGTGAATC AGGGAAGTAC GCCCCATTGA TGTTATTTGA
CTGCAGGGGC TATGAACCAG TAGATTTTGT ATTCGGTGAT GGATGGAAAG TTGAATCGCT TGAGGGAACC AAATTTGAGA
ATGTTGACTT GTCAAGTGGA GAATATGCTG ACTATGACGA GAAGGGAGAA TGCCCAGTCA TGATATCTGC TCTTCGAGCT
ACTTTTGAAG TGACAAAGTA G

>Vigan.03G256900.01
MVNFTLMITA ELENLTNLQP QGGCDDPDFS YLFKLKCGRC GEISQKETCV LLNDTVPLPV GKGTTHLIQK CKFCGRDGTV
TMIEGKGKPL TQEISESGKY APLMLFDCRG YEPVDFVFGD GWKVESLEGT KFENVDLSSG EYADYDEKGE CPVMISALRA
TFEVTK*