GBrowse Details

Vigan.03G249600.01

Basic Information:
Name: Vigan.03G249600.01
Multiple alignment
Variant Information
Position: Chr03:38631529..38635201 (- strand)
Length: 3673
Functional Information:
Description: Similar to PHD4. [Q06A76, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: histone binding (GO:0042393)
InterPro: Zinc finger, PHD-type (IPR001965)
Zinc finger, FYVE/PHD-type (IPR011011)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, PHD-type, conserved site (IPR019786)
Zinc finger, PHD-finger (IPR019787)
Alfin (IPR021998)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:34.16,32.35,12.71,16.75,22.22,30.37,24.23,11.67
Arabidopsis thaliana homolog: AT5G20510.1
Automatic updates:
Name: NM_001250905 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PHD2 (LOC100170695), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250938 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PHD4 (LOC100170697), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:38631529..38631832 (- strand)
Length: 304
Type: three_prime_UTR
Position: Chr03:38631833..38632102 (- strand)
Length: 270
Type: CDS
Position: Chr03:38632415..38632547 (- strand)
Length: 133
Type: CDS
Position: Chr03:38633194..38633422 (- strand)
Length: 229
Type: CDS
Position: Chr03:38634810..38634842 (- strand)
Length: 33
Type: CDS
Position: Chr03:38634978..38635068 (- strand)
Length: 91
Type: CDS
Position: Chr03:38635069..38635201 (- strand)
Length: 133
Type: five_prime_UTR

>Vigan.03G249600.01 class=Sequence position=Chr03:38631529..38635201 (- strand)
CCTATTTTCA TGTGTGTTGT GTTTTGTTGT ACACACTACA CACAGATACA TAAACATAGA GAGTGAGAAA AGGGTCAAAT
AGTTTACTTG TTTTTCTTTC CCTCCATTCT TTTCAACTCT GCAACCTTCG GACATGGACG CAGGATACAA TCCTCGTACG
GTCGAAGAGG TCTTTAGGGA TTTCAAAGGT CGCAGAGCTG CTCTGATTAA AGCTCTCACC ACTGGTTCTT ACTTCTTATC
CTTTTCCATT CCAATTCTTT ATTTTTTTCT TTGCTTTTAA AGGATAAAAA ACTGAATAAA AATTGGCGTT TTTCACCCTC
CTAATGTTGT TCTTTTCCAC TTCTATGTGG GTATTCCAGA TGTTGAAGAG TTCTACCAGC AGTGTGATCC CGGTAACGTT
TTGTTCCGTA AAAAAACTGT TTTTTTTCTT TTCATTGTTT TTGTTTTGGT CGGCTTTTAT GATGTTTCTT TTCCAGTCTG
GACCATTGAA TTGGGTTTAT TTCTGAAGTG GGAGGGGAAG ATTATTTTGA GTTTGGGTTT TGTTGGTTTC AATTTGGAGA
GAAATTTGAA TTTTGGTGCG TGCGAAACTA TGTTTGGATT AGATTTTGGG AAGTACTTTT GCGAATTGGA ATGCACAATT
GCGAATTCCA GTGCAGCACA TGACCGAAGG GGAAAATGTT GTTTTGAGAG TAAAATTATT TTTGGTTTGT CCCAGCTTCA
ATCCTAACAG CACTGGGGAT GGGATTTTCG AACATAAATT TTGAAAATAT GGGAAAGCGT GTATACCAAT TTGCTTACTC
TTGACAATTT TGTAATGGCT ACTAGTTGAA GTTTTCATTT TTCTTATCTA ATAAACACTG TGCTCTATTT TGTATGGAAT
GGGGTCATTA GAGGATTTCT ATTTCTGTTT CTTTGTAGTT GTTATATAGC TATGCTGTAG CATGGACTGA AGTTTCCTTA
TGCTACCATA AATGGGAAGA ATCTCAATTG CAAAATATTC AGTTGGTAGC TTTCAAATTT AGCGTGCATC ATTATGTTTC
ATTGTACTTG GGCCCATAAA ATTTGTTTGG CTGAGAAGGC TATACTTGCA CCGATTAAAA TATGGTGAAA TGGATTCATT
TTGCATGCTT CCTTTCATAT GAATTATATT TGATGGGACA CAGAATGAAG CTAAATTTTA TTTTCATTTT AGATTTTTTC
AGGACCATTT GTTCTAATCC TTACCCTTTT GGGAGGTATG AATATGACAT GACTTGAAAT GAGTACGTGT GTGCTTGTTA
TTGCTTGATA TATTTTTTGA CAATGATTTT GGGTTAAAGG GGTGTGCTGA TAGACATTAG GTTGGTCTTT AATGGACTGC
AGTCAAGGCA CTGTGCAGAT CTCTTGGTAT ATTTGGGGCT TGGAAGGGGA GGTAATTTAA AATAAAATGA TGAGGAAGTG
TAAGGGTTTT CTTTGGATGT TTACTACAAA ATAATGAAAG ATTCTAGACT TTTGGGTTAT GTGAGACTGT CTTATTTCCC
TCATAAGGAA AAATCTCAAA TGTCAGACAT CTGTTAAATT TAATTTTTCT GCCTATCCAA TGTCATTAAT GCCGGGTATG
AATCTTTTCT TTTGGGGTAT TTGATCTAAT GTGTGATTGA TATAAGCTGT TTCAACAGGC TACCATAATG CCATAACTCA
GTTACTGATT ATAGTGTTGT TCTTATTGCA TTTAAAATTT CTTAGTATTT TTTGAAAATG AGACTTTAAA TGTGAACTTA
TATGAGTTCT GTGGTACAGA GAAGGAAAAT CTTTGCCTTT ATGGATTTCC AAGTGAGCAG TGGGAAGTCA ATCTGCCAGC
TGAGGAGGTG CCTCCAGAGC TTCCAGAGCC AGCATTAGGT ATTAACTTTG CCAGAGATGG GATGCAGGAT AAGGACTGGC
TGTCTTTGGT TGCTGTACAC AGTGATGCTT GGTTACTTGC TGTGGCTTTT TATTTTGGTG CTAGGTTTGG GTTTGACAAG
GCTGATAGGT ACGTACTTTC CTTTCTCTTC TACATATAAA AAAATAAGGA TCATCGGATG TTGTTTTCAC ATTATCCCGA
ATCTCTGATG GTTTTTCACT ATCTGATTCT AACTAAAATC AGATGGAAGA ATACCGGAGA GGGTATGAAT ATCATACTCC
CTCACAACCG TGTGTTTCCA TAAGAGACTT GGGAAGTTCA ATTTTTTCTG TTACCCGTTC CAATAATTAC TAGATTGTAA
CGTATGAATA TGATAGTGTA AAAGTACTAG TTGTGAGGGG TAGAACATGA GTGTTTTAAG TCCCCATTCA GTCTGTTGAA
TTGTTTTCTG TTTCCGCATA ATTTTGTTCC TTTTAGTAGA AAAAACATTT TCCCATGACC TAGGTACTCA TCTAATGCCG
TACAGTTCAA ATTTTAACAC GTATTAATTA GAGGATCTTT TTCTTTTAAG AAGAGCAAAC TTTTCTATAC CTGGCTTGAA
TTCATTCCTT AGCAGTTCTA ATTAAAGATG TTGATGGGTT TTTCTATCTC CCCTAGTTTG TCAACTTTCA GTTTGCATTC
TTTTGTGACT TGTTGATTGT TTTACCTATC TTAGTTGTGA TTAATTGGAG AAGTTGGGAT CTTTCAGTAA TATTTATTTT
TCATCTTCGT GCAGGAAGCG ACTATTTAAC ATGATTAATG ATCTTCCAAC TATATTTGAG GTTGTTACTG GGATGGCCAA
GAAACAAGGA AAGGAAAAGT CATCAGTTTC AAATCATAGC AGTAACAAGT CAAAATCAAA CTCTAAGGTA TGTGTTTGAA
AATCTAGCTG CTTTTACATG CAGTAGCATG CAAAGTATCA TATAAGCTTA TAGAAATGAG GCTAATTCCT AAGTTTGTAC
GTGTCTGATA CTGATTATTA CTTAGAATTA GAAATACTCT TCTATCAAAA TTTCTCTTGG AAAACTTGTG GTATGTTGTC
TTTAAGATGT TATCATTAGA ACTAGGAGTG AAAAAGTATT CTGGGAGCAG ATATGTCTTC TACTATTTGT AATGTGATCT
GGTTTCTGAT TAGTATTTGA CTATGTTCTT TCTCTCATCT CTTGAGTTGA CAAATGCAGC GAGGTTCTGA ATCAAAGAAC
ACAAAAGCAA TGCAATCAAA GGACGAGGAT GATGAGGGTG TGGCTTTGGA AGCTGATGAT GAAGAGGAGC ATGAAGAGAC
TTTCTGTGGG GCATGTGGAG AGAGCTACAC TTCTGATGAG TTCTGGATTT GCTGTGACAT CTGTGAGAAA TGGTTCCATG
GCAAGTGCGT GAAGATTACA CCTGCAAGAG CTGAGCACAT CAAGCAGTAC AAATGTCCAT CCTGCAGCAA CAAGAGAGCT
AGACCTTGAC CATGTGGCTA GGATGGTTGT GACTATAATC TTGGCAATTT TATAACTACT AATTTGTTTA GTAGGTCAAG
TTTATTAGTC TTGCTGTGAA TTTCAGGTAT ATTATTCCAG ATAAAACATT AGGTTTATGA GCTGCTGTTG ATTTACCTAC
CATTAGGATA GTTATTTCAT AAGCAGACTT TATGTTTTTG TTAAGTACTT TCTTAAATTT AATGTAGTTG TAACTGTGTT
GTGTCCATAG CTTGCTCAAG TTTATACTCA TATTCCATGT CATGGGAATC TCTTTTCATT TTTTTCACTG AAC

>Vigan.03G249600.01
CCTATTTTCA TGTGTGTTGT GTTTTGTTGT ACACACTACA CACAGATACA TAAACATAGA GAGTGAGAAA AGGGTCAAAT
AGTTTACTTG TTTTTCTTTC CCTCCATTCT TTTCAACTCT GCAACCTTCG GACATGGACG CAGGATACAA TCCTCGTACG
GTCGAAGAGG TCTTTAGGGA TTTCAAAGGT CGCAGAGCTG CTCTGATTAA AGCTCTCACC ACTGATGTTG AAGAGTTCTA
CCAGCAGTGT GATCCCGAGA AGGAAAATCT TTGCCTTTAT GGATTTCCAA GTGAGCAGTG GGAAGTCAAT CTGCCAGCTG
AGGAGGTGCC TCCAGAGCTT CCAGAGCCAG CATTAGGTAT TAACTTTGCC AGAGATGGGA TGCAGGATAA GGACTGGCTG
TCTTTGGTTG CTGTACACAG TGATGCTTGG TTACTTGCTG TGGCTTTTTA TTTTGGTGCT AGGTTTGGGT TTGACAAGGC
TGATAGGAAG CGACTATTTA ACATGATTAA TGATCTTCCA ACTATATTTG AGGTTGTTAC TGGGATGGCC AAGAAACAAG
GAAAGGAAAA GTCATCAGTT TCAAATCATA GCAGTAACAA GTCAAAATCA AACTCTAAGC GAGGTTCTGA ATCAAAGAAC
ACAAAAGCAA TGCAATCAAA GGACGAGGAT GATGAGGGTG TGGCTTTGGA AGCTGATGAT GAAGAGGAGC ATGAAGAGAC
TTTCTGTGGG GCATGTGGAG AGAGCTACAC TTCTGATGAG TTCTGGATTT GCTGTGACAT CTGTGAGAAA TGGTTCCATG
GCAAGTGCGT GAAGATTACA CCTGCAAGAG CTGAGCACAT CAAGCAGTAC AAATGTCCAT CCTGCAGCAA CAAGAGAGCT
AGACCTTGAC CATGTGGCTA GGATGGTTGT GACTATAATC TTGGCAATTT TATAACTACT AATTTGTTTA GTAGGTCAAG
TTTATTAGTC TTGCTGTGAA TTTCAGGTAT ATTATTCCAG ATAAAACATT AGGTTTATGA GCTGCTGTTG ATTTACCTAC
CATTAGGATA GTTATTTCAT AAGCAGACTT TATGTTTTTG TTAAGTACTT TCTTAAATTT AATGTAGTTG TAACTGTGTT
GTGTCCATAG CTTGCTCAAG TTTATACTCA TATTCCATGT CATGGGAATC TCTTTTCATT TTTTTCACTG AAC

>Vigan.03G249600.01
ATGGACGCAG GATACAATCC TCGTACGGTC GAAGAGGTCT TTAGGGATTT CAAAGGTCGC AGAGCTGCTC TGATTAAAGC
TCTCACCACT GATGTTGAAG AGTTCTACCA GCAGTGTGAT CCCGAGAAGG AAAATCTTTG CCTTTATGGA TTTCCAAGTG
AGCAGTGGGA AGTCAATCTG CCAGCTGAGG AGGTGCCTCC AGAGCTTCCA GAGCCAGCAT TAGGTATTAA CTTTGCCAGA
GATGGGATGC AGGATAAGGA CTGGCTGTCT TTGGTTGCTG TACACAGTGA TGCTTGGTTA CTTGCTGTGG CTTTTTATTT
TGGTGCTAGG TTTGGGTTTG ACAAGGCTGA TAGGAAGCGA CTATTTAACA TGATTAATGA TCTTCCAACT ATATTTGAGG
TTGTTACTGG GATGGCCAAG AAACAAGGAA AGGAAAAGTC ATCAGTTTCA AATCATAGCA GTAACAAGTC AAAATCAAAC
TCTAAGCGAG GTTCTGAATC AAAGAACACA AAAGCAATGC AATCAAAGGA CGAGGATGAT GAGGGTGTGG CTTTGGAAGC
TGATGATGAA GAGGAGCATG AAGAGACTTT CTGTGGGGCA TGTGGAGAGA GCTACACTTC TGATGAGTTC TGGATTTGCT
GTGACATCTG TGAGAAATGG TTCCATGGCA AGTGCGTGAA GATTACACCT GCAAGAGCTG AGCACATCAA GCAGTACAAA
TGTCCATCCT GCAGCAACAA GAGAGCTAGA CCTTGA

>Vigan.03G249600.01
MDAGYNPRTV EEVFRDFKGR RAALIKALTT DVEEFYQQCD PEKENLCLYG FPSEQWEVNL PAEEVPPELP EPALGINFAR
DGMQDKDWLS LVAVHSDAWL LAVAFYFGAR FGFDKADRKR LFNMINDLPT IFEVVTGMAK KQGKEKSSVS NHSSNKSKSN
SKRGSESKNT KAMQSKDEDD EGVALEADDE EEHEETFCGA CGESYTSDEF WICCDICEKW FHGKCVKITP ARAEHIKQYK
CPSCSNKRAR P*